Wall clock time and date at job start Mon Mar 30 2020 01:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42893 * 109.46973 * 2 1 4 4 C 1.42896 * 113.99901 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47276 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.47378 * 179.42840 * 5 4 3 7 7 C 1.50696 * 110.53701 * 298.52854 * 6 5 4 8 8 O 1.21273 * 120.00351 * 113.00812 * 7 6 5 9 9 N 1.34779 * 119.99652 * 293.00188 * 7 6 5 10 10 C 1.46503 * 119.99972 * 185.01783 * 9 7 6 11 11 C 1.50698 * 109.47388 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99755 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99984 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00207 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00145 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47395 * 89.99692 * 15 13 11 17 17 H 1.48499 * 109.47365 * 209.99941 * 15 13 11 18 18 H 1.48505 * 109.47175 * 330.00087 * 15 13 11 19 19 C 1.54887 * 110.48494 * 61.13715 * 6 5 4 20 20 C 1.54888 * 102.74823 * 156.62088 * 19 6 5 21 21 C 1.54267 * 104.19590 * 322.05685 * 20 19 6 22 22 C 1.53876 * 106.59518 * 23.61171 * 21 20 19 23 23 H 1.08996 * 109.46677 * 59.99804 * 1 2 3 24 24 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46873 * 299.99635 * 1 2 3 26 26 H 1.09004 * 109.46776 * 240.00132 * 2 1 3 27 27 H 1.08996 * 109.46677 * 120.00196 * 2 1 3 28 28 H 1.09004 * 109.47062 * 60.00334 * 4 3 2 29 29 H 1.08998 * 109.47240 * 300.00150 * 4 3 2 30 30 H 1.09009 * 109.47085 * 59.43197 * 5 4 3 31 31 H 1.09002 * 109.47344 * 299.43008 * 5 4 3 32 32 H 0.96999 * 120.00690 * 5.01945 * 9 7 6 33 33 H 1.09006 * 109.47417 * 300.00481 * 10 9 7 34 34 H 1.09002 * 109.47284 * 60.00072 * 10 9 7 35 35 H 0.97002 * 119.99960 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.75743 * 274.94045 * 19 6 5 37 37 H 1.09006 * 110.75435 * 38.30258 * 19 6 5 38 38 H 1.09003 * 110.48307 * 203.37642 * 20 19 6 39 39 H 1.09002 * 110.48387 * 80.73853 * 20 19 6 40 40 H 1.08998 * 110.03294 * 264.32799 * 21 20 19 41 41 H 1.08994 * 110.02773 * 142.89555 * 21 20 19 42 42 H 1.09003 * 110.02965 * 240.71239 * 22 21 20 43 43 H 1.09005 * 110.03183 * 119.28810 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3506 3.0592 0.0162 7 6 5.9184 2.4319 1.2632 8 8 6.5976 1.4304 1.1830 9 7 5.6714 2.9840 2.4677 10 6 6.3119 2.4403 3.6679 11 6 5.8718 3.2299 4.8737 12 1 5.1835 4.0541 4.7576 13 6 6.3478 2.9002 6.1249 14 7 7.1855 1.8963 6.2663 15 14 5.8018 3.8785 7.6196 16 1 4.5793 3.2623 8.1950 17 1 6.8840 3.8741 8.6365 18 1 5.5080 5.2770 7.2156 19 6 5.9590 2.4009 -1.2470 20 6 7.3268 3.1155 -1.3797 21 6 7.0325 4.5743 -0.9734 22 6 5.7760 4.5384 -0.0859 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8340 0.9764 -0.8892 29 1 3.8333 0.9767 0.8908 30 1 3.4138 3.4239 0.8861 31 1 3.4316 3.4199 -0.8939 32 1 5.0697 3.7413 2.5400 33 1 6.0234 1.3965 3.7925 34 1 7.3948 2.5080 3.5643 35 1 7.5207 1.6646 7.1466 36 1 6.0955 1.3300 -1.0968 37 1 5.3363 2.5932 -2.1207 38 1 7.6824 3.0704 -2.4091 39 1 8.0566 2.6708 -0.7031 40 1 6.8455 5.1786 -1.8611 41 1 7.8737 4.9828 -0.4135 42 1 4.9793 5.1254 -0.5429 43 1 6.0074 4.9297 0.9048 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427636978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:06 Heat of formation + Delta-G solvation = -139.666764 kcal Electronic energy + Delta-G solvation = -21495.302353 eV Core-core repulsion = 18345.230789 eV Total energy + Delta-G solvation = -3150.071564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55753 -39.03676 -38.11758 -36.17159 -34.46013 -33.80575 -31.78835 -29.94380 -29.15701 -27.87356 -25.10290 -23.74655 -23.62851 -22.83668 -21.27379 -20.45002 -18.50309 -17.73722 -17.60701 -17.21651 -17.06144 -16.33997 -16.27521 -15.65853 -15.43768 -15.27540 -15.00276 -14.42304 -14.18012 -14.02778 -13.82409 -13.33168 -13.20041 -12.98433 -12.93513 -12.73874 -12.42552 -12.25509 -12.23082 -12.12920 -12.05764 -11.89294 -11.74104 -11.57140 -11.46121 -11.30102 -10.82160 -10.63081 -10.52201 -9.82804 -8.31313 -6.48123 1.41052 1.43531 1.54859 1.76280 2.30403 2.54045 2.63240 3.03463 3.46964 3.63543 3.80576 4.03871 4.08216 4.14538 4.17657 4.32231 4.39100 4.44443 4.45774 4.53247 4.57494 4.67652 4.81956 4.86026 4.95550 5.00253 5.02861 5.05152 5.07784 5.08683 5.17731 5.20820 5.25246 5.27337 5.38318 5.47579 5.52903 5.68143 5.83074 6.17967 6.62730 6.90244 7.21311 7.47759 8.80954 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.005667 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.339700 B = 4939.761258 C = 6441.492356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.401 6.401 4 C 0.063 3.937 5 C -0.092 4.092 6 C -0.074 4.074 7 C 0.509 3.491 8 O -0.598 6.598 9 N -0.707 5.707 10 C 0.270 3.730 11 C -0.555 4.555 12 H 0.082 0.918 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.984 3.016 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.255 1.255 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.112 4.112 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.013 0.987 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.404 0.596 33 H -0.018 1.018 34 H -0.014 1.014 35 H 0.269 0.731 36 H 0.054 0.946 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.031 0.969 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 4.633 -16.972 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.321 6.321 4 C -0.013 4.013 5 C -0.130 4.130 6 C -0.077 4.077 7 C 0.297 3.703 8 O -0.480 6.480 9 N -0.357 5.357 10 C 0.147 3.853 11 C -0.593 4.593 12 H 0.100 0.900 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.807 3.193 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.178 1.178 19 C -0.138 4.138 20 C -0.164 4.164 21 C -0.158 4.158 22 C -0.150 4.150 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.240 0.760 33 H 0.000 1.000 34 H 0.004 0.996 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.129 0.871 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.572 4.006 -16.871 19.807 hybrid contribution 0.384 -0.304 1.477 1.556 sum -9.189 3.702 -15.394 18.306 Atomic orbital electron populations 1.21739 0.91930 1.03482 1.03011 1.22680 0.97020 0.83124 1.00254 1.87797 1.21044 1.27728 1.95489 1.22496 0.80964 0.98314 0.99539 1.21502 0.91369 0.94759 1.05357 1.21638 0.95699 0.98151 0.92245 1.21221 0.79775 0.83524 0.85793 1.90601 1.42319 1.27433 1.87651 1.46198 1.47559 1.35009 1.06888 1.18492 0.91254 0.93019 0.82557 1.21593 1.29022 1.16841 0.91857 0.90022 1.26059 0.94432 0.96152 1.02827 1.70140 1.32354 1.29455 1.25016 0.85169 0.77833 0.79121 0.77185 1.19662 1.20789 1.17831 1.22493 0.96616 0.99221 0.95496 1.22351 0.96800 0.95653 1.01621 1.22147 0.96895 0.96603 1.00162 1.22322 0.99497 0.92150 1.00988 0.91194 0.89197 0.92539 0.92189 0.94635 0.91890 0.96847 0.90850 0.86628 0.76015 0.99961 0.99606 0.92240 0.92768 0.87384 0.89230 0.95002 0.88443 0.92937 0.87093 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 10.28 71.99 0.74 -1.84 16 2 C 0.05 1.06 6.66 71.99 0.48 1.54 16 3 O -0.40 -11.21 10.34 -148.98 -1.54 -12.75 16 4 C 0.06 1.83 5.51 71.98 0.40 2.22 16 5 C -0.09 -2.26 4.53 30.60 0.14 -2.13 16 6 C -0.07 -2.08 0.47 -51.85 -0.02 -2.10 16 7 C 0.51 21.09 5.15 87.66 0.45 21.54 16 8 O -0.60 -30.31 15.49 -3.01 -0.05 -30.36 16 9 N -0.71 -31.33 5.11 -466.78 -2.38 -33.72 16 10 C 0.27 15.28 5.43 85.63 0.47 15.75 16 11 C -0.56 -30.95 9.28 25.60 0.24 -30.71 16 12 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16 13 C 0.00 0.28 5.46 84.65 0.46 0.74 16 14 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 15 Si 0.98 42.97 29.54 68.60 2.03 45.00 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 19 C -0.10 -2.55 4.49 31.88 0.14 -2.41 16 20 C -0.13 -3.17 6.56 31.67 0.21 -2.97 16 21 C -0.12 -2.59 6.80 31.32 0.21 -2.38 16 22 C -0.11 -2.54 5.85 31.32 0.18 -2.36 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 1.64 7.22 -2.38 -0.02 1.62 16 29 H 0.01 0.48 7.30 -2.39 -0.02 0.47 16 30 H 0.07 1.87 8.00 -2.38 -0.02 1.85 16 31 H 0.12 2.08 8.10 -2.39 -0.02 2.06 16 32 H 0.40 15.31 7.72 -92.71 -0.72 14.59 16 33 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 34 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 36 H 0.05 1.67 7.16 -2.39 -0.02 1.65 16 37 H 0.11 1.95 8.06 -2.38 -0.02 1.93 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.03 1.03 8.01 -2.39 -0.02 1.02 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 1.74 7.81 -2.39 -0.02 1.72 16 43 H 0.06 1.52 7.11 -2.38 -0.02 1.51 16 Total: -1.00 -73.33 345.38 2.69 -70.65 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.25 Total: 23.06 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 4.09 Total: -5.10 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -2.10 Total: -90.50 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.59 Total: -43.11 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -73.33 2.69 -70.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427636978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.018 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds