Wall clock time and date at job start Mon Mar 30 2020 01:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.46501 * 120.00400 * 94.45543 * 3 2 1 5 5 C 1.50702 * 109.47008 * 264.08470 * 4 3 2 6 6 H 1.07998 * 120.00069 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99884 * 179.97438 * 5 4 3 8 8 N 1.31525 * 120.00445 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47107 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47137 * 119.99972 * 9 7 5 12 12 H 1.48501 * 109.47354 * 240.00080 * 9 7 5 13 13 C 1.34780 * 120.00017 * 274.45190 * 3 2 1 14 14 O 1.21280 * 119.99567 * 3.92954 * 13 3 2 15 15 C 1.50699 * 119.99771 * 183.92786 * 13 3 2 16 16 H 1.08995 * 109.47449 * 26.54006 * 15 13 3 17 17 C 1.53001 * 109.47248 * 266.53154 * 15 13 3 18 18 C 1.53002 * 109.47178 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.46751 * 60.00524 * 18 17 15 20 20 C 1.53001 * 109.46851 * 299.99676 * 19 18 17 21 21 H 1.09000 * 109.47240 * 300.00292 * 20 19 18 22 22 O 1.42904 * 109.46939 * 180.02562 * 20 19 18 23 23 C 1.42902 * 114.00025 * 90.00023 * 22 20 19 24 24 C 1.53002 * 109.47178 * 60.00586 * 20 19 18 25 25 H 1.09001 * 109.47375 * 60.00010 * 1 2 3 26 26 H 1.09003 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47166 * 300.00202 * 1 2 3 28 28 H 1.08998 * 109.47117 * 239.99640 * 2 1 3 29 29 H 1.09006 * 109.46692 * 120.00053 * 2 1 3 30 30 H 1.08994 * 109.47523 * 144.07577 * 4 3 2 31 31 H 1.09012 * 109.46863 * 24.07742 * 4 3 2 32 32 H 0.96997 * 119.99119 * 359.97438 * 8 7 5 33 33 H 1.09000 * 109.47240 * 300.00448 * 17 15 13 34 34 H 1.09002 * 109.46938 * 60.00731 * 17 15 13 35 35 H 1.09000 * 109.47275 * 300.00272 * 18 17 15 36 36 H 1.08995 * 109.47183 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.46590 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47002 * 60.00011 * 19 18 17 39 39 H 1.08991 * 109.46919 * 179.97438 * 23 22 20 40 40 H 1.08997 * 109.47003 * 300.00029 * 23 22 20 41 41 H 1.09006 * 109.47156 * 59.99896 * 23 22 20 42 42 H 1.09003 * 109.46679 * 180.02562 * 24 20 19 43 43 H 1.09000 * 109.47275 * 59.99727 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3554 2.0390 1.2648 5 6 1.1795 2.8557 1.7353 6 1 0.2720 2.8824 1.1504 7 6 1.2623 3.5688 2.9124 8 7 2.3672 3.5359 3.6250 9 14 -0.1951 4.5817 3.4953 10 1 -1.3091 4.4518 2.5220 11 1 -0.6397 4.0902 4.8243 12 1 0.2048 6.0078 3.6033 13 6 2.1575 2.0467 -1.1637 14 8 1.8117 1.5280 -2.2040 15 6 2.7429 3.4353 -1.1721 16 1 3.4009 3.5575 -0.3118 17 6 1.6137 4.4653 -1.1010 18 6 2.2081 5.8752 -1.1102 19 6 3.0076 6.0831 -2.3980 20 6 4.1368 5.0531 -2.4691 21 1 4.7950 5.1756 -1.6090 22 8 4.8840 5.2477 -3.6716 23 6 5.9810 6.1532 -3.5343 24 6 3.5425 3.6433 -2.4600 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.2155 2.6920 1.1169 31 1 2.5967 1.2845 2.0138 32 1 3.1238 3.0096 3.3225 33 1 0.9558 4.3431 -1.9614 34 1 1.0439 4.3169 -0.1838 35 1 2.8663 5.9976 -0.2500 36 1 1.4037 6.6089 -1.0591 37 1 3.4314 7.0873 -2.4043 38 1 2.3494 5.9607 -3.2581 39 1 6.4970 6.2463 -4.4898 40 1 5.6093 7.1300 -3.2249 41 1 6.6736 5.7734 -2.7831 42 1 4.3471 2.9096 -2.5101 43 1 2.8843 3.5208 -3.3201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432893098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:15 Heat of formation + Delta-G solvation = -110.889467 kcal Electronic energy + Delta-G solvation = -22288.774301 eV Core-core repulsion = 19139.950615 eV Total energy + Delta-G solvation = -3148.823686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.86176 -38.37928 -35.96377 -35.28885 -32.98009 -31.18378 -30.11836 -29.38066 -26.63127 -26.36940 -23.94962 -22.99488 -22.04628 -21.83112 -19.78862 -18.36383 -17.18119 -16.48910 -16.17963 -15.50129 -15.05737 -14.99910 -14.31620 -14.15292 -13.83227 -13.56668 -13.38386 -13.01041 -12.93883 -12.53834 -12.24969 -11.98556 -11.90281 -11.60554 -11.56330 -11.55328 -11.07827 -10.84315 -10.81666 -10.69513 -10.37220 -10.34825 -10.24387 -10.05154 -10.02596 -9.44857 -9.23017 -8.86308 -8.50684 -7.69860 -6.52868 -4.27893 3.33467 3.36173 3.37404 3.50394 3.67173 4.05228 4.39084 4.92686 4.96017 5.18148 5.20930 5.30307 5.32481 5.41982 5.48724 5.55788 5.58395 5.68944 5.73220 5.76687 5.83573 5.86694 5.95745 5.97798 6.19988 6.22030 6.25802 6.35680 6.46348 6.47043 6.53988 6.58372 6.72761 6.81635 6.88945 6.92320 7.30711 7.43446 7.84693 8.13163 8.40751 8.63927 8.98263 9.41880 10.82640 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.007100 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.093188 B = 3942.850503 C = 5050.949471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.607 4.607 6 H 0.059 0.941 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 1.067 2.933 10 H -0.288 1.288 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.525 3.475 14 O -0.572 6.572 15 C -0.093 4.093 16 H 0.094 0.906 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.138 4.138 20 C 0.091 3.909 21 H 0.060 0.940 22 O -0.387 6.387 23 C 0.031 3.969 24 C -0.097 4.097 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.025 0.975 32 H 0.269 0.731 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 3.067 -7.908 9.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.003 4.003 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.645 4.645 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.542 5.542 9 Si 0.896 3.104 10 H -0.213 1.213 11 H -0.213 1.213 12 H -0.211 1.211 13 C 0.313 3.687 14 O -0.453 6.453 15 C -0.115 4.115 16 H 0.112 0.888 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.176 4.176 20 C 0.034 3.966 21 H 0.078 0.922 22 O -0.306 6.306 23 C -0.065 4.065 24 C -0.135 4.135 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.431 3.682 -7.371 8.590 hybrid contribution 0.642 -0.829 -0.755 1.292 sum 3.072 2.854 -8.126 9.144 Atomic orbital electron populations 1.22079 0.96352 1.00719 1.02916 1.21212 0.94623 0.83289 1.01173 1.48099 1.63386 1.13066 1.07815 1.19558 0.96858 0.92872 0.80177 1.22319 1.00621 1.31668 1.09929 0.92317 1.25731 1.01849 0.97119 0.93295 1.70774 1.03892 1.39718 1.39846 0.83552 0.74568 0.76339 0.75988 1.21335 1.21258 1.21134 1.20352 0.78116 0.87189 0.83006 1.90580 1.52391 1.69797 1.32509 1.21124 0.98568 0.93052 0.98713 0.88766 1.21588 0.96859 0.92392 1.04216 1.21449 0.99476 0.97220 0.96828 1.22046 0.97893 0.98373 0.99310 1.22161 0.92318 0.95525 0.86603 0.92170 1.87901 1.43569 1.64889 1.34243 1.22745 0.89029 0.92798 1.01956 1.21408 0.99442 0.94397 0.98260 0.92766 0.93068 0.91451 0.91691 0.91317 0.95501 0.95728 0.92095 0.92407 0.88160 0.91483 0.91569 0.92332 0.91261 0.90019 0.94222 0.94185 0.91823 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.12 2.25 6.10 -4.04 -0.02 2.23 16 3 N -0.59 -12.49 2.48 -175.06 -0.43 -12.92 16 4 C 0.23 5.14 4.31 -5.19 -0.02 5.12 16 5 C -0.61 -15.00 7.52 -34.44 -0.26 -15.26 16 6 H 0.06 1.51 7.34 -52.49 -0.39 1.12 16 7 C 0.03 0.65 5.46 -17.82 -0.10 0.55 16 8 N -0.91 -24.80 13.65 55.43 0.76 -24.04 16 9 Si 1.07 23.42 29.90 -169.99 -5.08 18.33 16 10 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 13 C 0.52 11.11 6.60 -10.98 -0.07 11.04 16 14 O -0.57 -13.20 15.93 5.56 0.09 -13.12 16 15 C -0.09 -1.74 1.96 -91.77 -0.18 -1.92 16 16 H 0.09 1.81 5.85 -51.93 -0.30 1.51 16 17 C -0.11 -2.04 5.18 -26.73 -0.14 -2.17 16 18 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 16 19 C -0.14 -1.93 5.54 -26.73 -0.15 -2.08 16 20 C 0.09 1.36 2.61 -26.73 -0.07 1.29 16 21 H 0.06 0.86 7.79 -51.93 -0.40 0.46 16 22 O -0.39 -5.69 10.35 -35.23 -0.36 -6.05 16 23 C 0.03 0.34 10.82 101.05 1.09 1.44 16 24 C -0.10 -1.65 4.49 -26.73 -0.12 -1.77 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 28 H 0.06 1.19 7.62 -51.93 -0.40 0.79 16 29 H 0.07 1.19 7.79 -51.93 -0.40 0.78 16 30 H 0.03 0.63 5.80 -51.93 -0.30 0.33 16 31 H 0.02 0.58 7.65 -51.92 -0.40 0.19 16 32 H 0.27 7.25 7.22 -40.82 -0.29 6.96 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 2.06 5.66 -51.93 -0.29 1.77 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.72 7.87 -51.93 -0.41 0.32 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.39 7.87 -51.93 -0.41 -0.02 16 41 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.44 7.85 -51.93 -0.41 1.04 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -28.42 338.05 -7.19 -35.61 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.43 Total: 3.06 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 0.18 Total: -5.96 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.32 Total: -36.96 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.28 Total: -19.17 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.08 Total: 18.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.42 -7.19 -35.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432893098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.282 kcal (2) G-P(sol) polarization free energy of solvation -28.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds