Wall clock time and date at job start Mon Mar 30 2020 01:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.46501 * 120.00400 * 94.45543 * 3 2 1 5 5 C 1.50702 * 109.47008 * 264.08470 * 4 3 2 6 6 H 1.07998 * 120.00069 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99884 * 179.97438 * 5 4 3 8 8 N 1.31525 * 120.00445 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47107 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47137 * 119.99972 * 9 7 5 12 12 H 1.48501 * 109.47354 * 240.00080 * 9 7 5 13 13 C 1.34780 * 120.00017 * 274.45190 * 3 2 1 14 14 O 1.21280 * 119.99567 * 3.92954 * 13 3 2 15 15 C 1.50699 * 119.99771 * 183.92786 * 13 3 2 16 16 H 1.08995 * 109.47449 * 26.54006 * 15 13 3 17 17 C 1.53001 * 109.47248 * 266.53154 * 15 13 3 18 18 C 1.53002 * 109.47178 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.46751 * 60.00524 * 18 17 15 20 20 C 1.53001 * 109.46851 * 299.99676 * 19 18 17 21 21 H 1.09000 * 109.47240 * 300.00292 * 20 19 18 22 22 O 1.42904 * 109.46939 * 180.02562 * 20 19 18 23 23 C 1.42902 * 114.00025 * 90.00023 * 22 20 19 24 24 C 1.53002 * 109.47178 * 60.00586 * 20 19 18 25 25 H 1.09001 * 109.47375 * 60.00010 * 1 2 3 26 26 H 1.09003 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47166 * 300.00202 * 1 2 3 28 28 H 1.08998 * 109.47117 * 239.99640 * 2 1 3 29 29 H 1.09006 * 109.46692 * 120.00053 * 2 1 3 30 30 H 1.08994 * 109.47523 * 144.07577 * 4 3 2 31 31 H 1.09012 * 109.46863 * 24.07742 * 4 3 2 32 32 H 0.96997 * 119.99119 * 359.97438 * 8 7 5 33 33 H 1.09000 * 109.47240 * 300.00448 * 17 15 13 34 34 H 1.09002 * 109.46938 * 60.00731 * 17 15 13 35 35 H 1.09000 * 109.47275 * 300.00272 * 18 17 15 36 36 H 1.08995 * 109.47183 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.46590 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47002 * 60.00011 * 19 18 17 39 39 H 1.08991 * 109.46919 * 179.97438 * 23 22 20 40 40 H 1.08997 * 109.47003 * 300.00029 * 23 22 20 41 41 H 1.09006 * 109.47156 * 59.99896 * 23 22 20 42 42 H 1.09003 * 109.46679 * 180.02562 * 24 20 19 43 43 H 1.09000 * 109.47275 * 59.99727 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3554 2.0390 1.2648 5 6 1.1795 2.8557 1.7353 6 1 0.2720 2.8824 1.1504 7 6 1.2623 3.5688 2.9124 8 7 2.3672 3.5359 3.6250 9 14 -0.1951 4.5817 3.4953 10 1 -1.3091 4.4518 2.5220 11 1 -0.6397 4.0902 4.8243 12 1 0.2048 6.0078 3.6033 13 6 2.1575 2.0467 -1.1637 14 8 1.8117 1.5280 -2.2040 15 6 2.7429 3.4353 -1.1721 16 1 3.4009 3.5575 -0.3118 17 6 1.6137 4.4653 -1.1010 18 6 2.2081 5.8752 -1.1102 19 6 3.0076 6.0831 -2.3980 20 6 4.1368 5.0531 -2.4691 21 1 4.7950 5.1756 -1.6090 22 8 4.8840 5.2477 -3.6716 23 6 5.9810 6.1532 -3.5343 24 6 3.5425 3.6433 -2.4600 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.2155 2.6920 1.1169 31 1 2.5967 1.2845 2.0138 32 1 3.1238 3.0096 3.3225 33 1 0.9558 4.3431 -1.9614 34 1 1.0439 4.3169 -0.1838 35 1 2.8663 5.9976 -0.2500 36 1 1.4037 6.6089 -1.0591 37 1 3.4314 7.0873 -2.4043 38 1 2.3494 5.9607 -3.2581 39 1 6.4970 6.2463 -4.4898 40 1 5.6093 7.1300 -3.2249 41 1 6.6736 5.7734 -2.7831 42 1 4.3471 2.9096 -2.5101 43 1 2.8843 3.5208 -3.3201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432893098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:15 Heat of formation + Delta-G solvation = -126.431127 kcal Electronic energy + Delta-G solvation = -22289.448238 eV Core-core repulsion = 19139.950615 eV Total energy + Delta-G solvation = -3149.497623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42322 -39.68132 -37.27001 -37.02753 -34.87169 -32.67478 -31.50335 -30.74432 -28.51303 -27.31384 -25.45838 -24.89694 -23.34355 -23.25308 -21.11006 -20.05737 -18.93979 -18.14046 -17.56196 -16.82689 -16.47970 -16.11152 -15.92316 -15.66421 -15.43021 -14.99544 -14.76265 -14.66721 -14.25248 -14.18397 -13.69769 -13.51666 -13.35250 -13.33353 -13.00749 -12.63934 -12.61150 -12.55842 -12.26812 -12.03717 -11.96129 -11.83670 -11.63525 -11.46816 -11.42627 -11.11795 -10.74147 -10.50092 -10.31571 -9.49279 -8.56702 -6.32703 1.56993 1.62239 1.67244 1.79226 2.19526 2.56991 2.81440 3.19094 3.53935 3.69038 3.93643 3.97718 4.14159 4.15984 4.29411 4.33418 4.36630 4.38509 4.46507 4.47320 4.55054 4.57259 4.62115 4.66316 4.82537 4.83360 4.89545 4.95703 4.97185 5.04325 5.13421 5.14524 5.24501 5.29591 5.39446 5.43180 5.71757 5.88108 6.17737 6.26769 6.53843 6.64236 7.26064 7.43531 8.78461 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.007100 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.093188 B = 3942.850503 C = 5050.949471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.112 3.888 3 N -0.597 5.597 4 C 0.236 3.764 5 C -0.598 4.598 6 H 0.046 0.954 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 1.105 2.895 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.277 1.277 13 C 0.518 3.482 14 O -0.593 6.593 15 C -0.088 4.088 16 H 0.087 0.913 17 C -0.109 4.109 18 C -0.106 4.106 19 C -0.131 4.131 20 C 0.096 3.904 21 H 0.067 0.933 22 O -0.406 6.406 23 C 0.023 3.977 24 C -0.090 4.090 25 H 0.035 0.965 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.024 0.976 31 H 0.017 0.983 32 H 0.261 0.739 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.224 4.102 -8.304 9.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 N -0.327 5.327 4 C 0.115 3.885 5 C -0.636 4.636 6 H 0.065 0.935 7 C -0.214 4.214 8 N -0.568 5.568 9 Si 0.928 3.072 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.202 1.202 13 C 0.308 3.692 14 O -0.476 6.476 15 C -0.109 4.109 16 H 0.105 0.895 17 C -0.147 4.147 18 C -0.144 4.144 19 C -0.169 4.169 20 C 0.038 3.962 21 H 0.085 0.915 22 O -0.326 6.326 23 C -0.073 4.073 24 C -0.128 4.128 25 H 0.054 0.946 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.491 4.706 -7.775 9.424 hybrid contribution 0.654 -1.228 -0.686 1.551 sum 3.145 3.479 -8.461 9.674 Atomic orbital electron populations 1.21975 0.95649 1.02401 1.00978 1.21440 0.95213 0.82267 1.02173 1.48171 1.63341 1.13981 1.07214 1.19319 0.96145 0.92417 0.80611 1.22376 1.00501 1.31296 1.09461 0.93527 1.26792 1.03055 0.97877 0.93629 1.70874 1.04431 1.40876 1.40641 0.83054 0.72582 0.75667 0.75867 1.20315 1.20980 1.20243 1.20826 0.77763 0.88015 0.82626 1.90559 1.53456 1.70507 1.33064 1.21099 0.98707 0.91780 0.99355 0.89493 1.21512 0.96429 0.94189 1.02522 1.21411 0.99997 0.95470 0.97516 1.21981 0.97337 0.99330 0.98223 1.22043 0.92849 0.94091 0.87178 0.91499 1.87868 1.44668 1.66063 1.33962 1.22995 0.88188 0.92668 1.03401 1.21312 0.98758 0.96251 0.96498 0.94598 0.89645 0.93243 0.91143 0.89810 0.95794 0.96501 0.92958 0.92749 0.90871 0.91896 0.89936 0.89906 0.91475 0.88198 0.92895 0.93570 0.92310 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 10.21 71.98 0.73 -4.62 16 2 C 0.11 4.12 6.10 86.38 0.53 4.64 16 3 N -0.60 -25.30 2.48 -826.15 -2.05 -27.35 16 4 C 0.24 10.86 4.31 85.63 0.37 11.23 16 5 C -0.60 -29.70 7.52 25.60 0.19 -29.51 16 6 H 0.05 2.41 7.34 -2.91 -0.02 2.39 16 7 C -0.01 -0.68 5.46 84.65 0.46 -0.22 16 8 N -0.93 -50.95 13.65 21.45 0.29 -50.66 16 9 Si 1.10 46.53 29.90 68.60 2.05 48.58 16 10 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 13 C 0.52 22.18 6.60 87.66 0.58 22.75 16 14 O -0.59 -27.66 15.93 -3.03 -0.05 -27.71 16 15 C -0.09 -3.31 1.96 -11.54 -0.02 -3.33 16 16 H 0.09 3.38 5.85 -2.39 -0.01 3.37 16 17 C -0.11 -3.91 5.18 30.60 0.16 -3.75 16 18 C -0.11 -3.08 5.92 30.60 0.18 -2.90 16 19 C -0.13 -3.37 5.54 30.60 0.17 -3.20 16 20 C 0.10 2.70 2.61 30.60 0.08 2.78 16 21 H 0.07 1.79 7.79 -2.39 -0.02 1.77 16 22 O -0.41 -11.18 10.35 -148.98 -1.54 -12.72 16 23 C 0.02 0.45 10.82 113.37 1.23 1.67 16 24 C -0.09 -3.04 4.49 30.60 0.14 -2.90 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.07 2.53 7.62 -2.39 -0.02 2.51 16 29 H 0.08 2.82 7.79 -2.38 -0.02 2.80 16 30 H 0.02 1.13 5.80 -2.39 -0.01 1.12 16 31 H 0.02 0.81 7.65 -2.38 -0.02 0.79 16 32 H 0.26 14.23 7.22 -92.71 -0.67 13.56 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 3.03 5.66 -2.39 -0.01 3.02 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 1.77 7.87 -2.39 -0.02 1.75 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 0.88 7.87 -2.39 -0.02 0.86 16 41 H 0.05 0.83 8.09 -2.38 -0.02 0.81 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 2.37 7.85 -2.39 -0.02 2.35 16 Total: -1.00 -60.02 338.05 4.56 -55.45 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 1.06 Total: 21.76 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 4.79 Total: -7.35 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -1.76 Total: -78.01 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.59 Total: -40.43 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.05 Total: 48.58 kcal Total: -60.02 4.56 -55.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432893098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.976 kcal (2) G-P(sol) polarization free energy of solvation -60.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds