Wall clock time and date at job start Mon Mar 30 2020 01:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47521 * 2 1 4 4 C 1.46497 * 120.00450 * 264.45814 * 3 2 1 5 5 C 1.50699 * 109.47245 * 264.82723 * 4 3 2 6 6 H 1.08001 * 120.00084 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00131 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00186 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99937 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47683 * 89.99408 * 9 7 5 11 11 H 1.48502 * 109.47305 * 209.99609 * 9 7 5 12 12 H 1.48505 * 109.47232 * 329.99296 * 9 7 5 13 13 C 1.34781 * 119.99595 * 84.45448 * 3 2 1 14 14 O 1.21279 * 120.00197 * 6.11577 * 13 3 2 15 15 C 1.50700 * 119.99730 * 186.10957 * 13 3 2 16 16 H 1.09003 * 109.47682 * 312.30619 * 15 13 3 17 17 C 1.53008 * 109.46807 * 72.30270 * 15 13 3 18 18 C 1.53000 * 109.46867 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47367 * 299.99993 * 18 17 15 20 20 C 1.52995 * 109.47019 * 59.99991 * 19 18 17 21 21 H 1.09000 * 109.47124 * 60.00410 * 20 19 18 22 22 O 1.42904 * 109.47086 * 179.97438 * 20 19 18 23 23 C 1.42895 * 114.00458 * 270.00198 * 22 20 19 24 24 C 1.53000 * 109.47587 * 300.00190 * 20 19 18 25 25 H 1.08995 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46834 * 299.99911 * 1 2 3 27 27 H 1.08997 * 109.46997 * 59.99972 * 1 2 3 28 28 H 1.09005 * 109.47131 * 240.00019 * 2 1 3 29 29 H 1.09006 * 109.47558 * 120.00580 * 2 1 3 30 30 H 1.09005 * 109.46766 * 24.82434 * 4 3 2 31 31 H 1.09006 * 109.47601 * 144.82635 * 4 3 2 32 32 H 0.97001 * 120.00278 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47324 * 299.99488 * 17 15 13 34 34 H 1.09003 * 109.47336 * 60.00189 * 17 15 13 35 35 H 1.09000 * 109.47326 * 59.99919 * 18 17 15 36 36 H 1.09004 * 109.47125 * 180.02562 * 18 17 15 37 37 H 1.08999 * 109.47356 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46837 * 300.00226 * 19 18 17 39 39 H 1.09003 * 109.47332 * 180.02562 * 23 22 20 40 40 H 1.09003 * 109.47250 * 300.00331 * 23 22 20 41 41 H 1.09004 * 109.46847 * 59.99622 * 23 22 20 42 42 H 1.09000 * 109.47068 * 300.00254 * 24 20 19 43 43 H 1.08995 * 109.47603 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3782 2.0310 -1.2627 5 6 3.8605 1.8909 -1.4953 6 1 4.4734 1.3703 -0.7744 7 6 4.4343 2.4274 -2.6285 8 7 5.7279 2.3056 -2.8312 9 14 3.3743 3.3285 -3.8750 10 1 3.3144 4.7701 -3.5239 11 1 3.9627 3.1730 -5.2296 12 1 2.0030 2.7586 -3.8627 13 6 2.1367 2.0540 1.1618 14 8 1.9458 1.4838 2.2150 15 6 2.5063 3.5150 1.1521 16 1 3.3594 3.6696 0.4915 17 6 1.3178 4.3383 0.6515 18 6 1.6928 5.8216 0.6422 19 6 2.0585 6.2642 2.0604 20 6 3.2469 5.4408 2.5610 21 1 4.1002 5.5958 1.9008 22 8 3.5889 5.8545 3.8855 23 6 4.5496 6.9111 3.9346 24 6 2.8720 3.9575 2.5703 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8356 1.5587 -2.0818 31 1 2.1162 3.0880 -1.2150 32 1 6.1316 2.6827 -3.6286 33 1 1.0571 4.0229 -0.3587 34 1 0.4646 4.1838 1.3120 35 1 2.5461 5.9766 -0.0181 36 1 0.8460 6.4083 0.2860 37 1 2.3253 7.3210 2.0539 38 1 1.2052 6.1092 2.7207 39 1 4.7558 7.1668 4.9740 40 1 5.4711 6.5871 3.4508 41 1 4.1552 7.7852 3.4163 42 1 2.0187 3.8025 3.2306 43 1 3.7185 3.3709 2.9274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432893101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:17 Heat of formation + Delta-G solvation = -103.008295 kcal Electronic energy + Delta-G solvation = -22194.486703 eV Core-core repulsion = 19046.004770 eV Total energy + Delta-G solvation = -3148.481933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92112 -38.36770 -36.00683 -35.28433 -32.75973 -31.32230 -30.31620 -29.53278 -27.57301 -26.36782 -23.98962 -22.71934 -22.11071 -21.75907 -19.79909 -18.21928 -17.07025 -16.65140 -16.13153 -15.55215 -15.11320 -15.00309 -14.63858 -14.37825 -14.06234 -13.56565 -13.39080 -13.12252 -12.89438 -12.46725 -12.43785 -12.09121 -12.05492 -11.72835 -11.62102 -11.55911 -11.11582 -10.96936 -10.89367 -10.76170 -10.42818 -10.41451 -10.30416 -10.21934 -10.18938 -9.62459 -9.41971 -8.90387 -8.73431 -7.72981 -6.24127 -4.25536 3.13455 3.21953 3.23401 3.36849 3.68153 4.02904 4.23286 4.86221 4.90593 5.05586 5.12605 5.24029 5.32469 5.39854 5.45548 5.50977 5.53844 5.62149 5.67610 5.68873 5.74509 5.79062 5.81007 5.92995 6.09683 6.18707 6.19208 6.22535 6.28174 6.37554 6.39722 6.50453 6.54054 6.58891 6.71794 6.75087 7.33815 7.39265 7.42377 8.15481 8.40211 8.81603 8.97401 9.35258 10.88551 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.007349 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.956608 B = 3808.943724 C = 4827.577112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.592 5.592 4 C 0.203 3.797 5 C -0.541 4.541 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.869 3.131 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.528 3.472 14 O -0.569 6.569 15 C -0.105 4.105 16 H 0.114 0.886 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.138 4.138 20 C 0.088 3.912 21 H 0.064 0.936 22 O -0.386 6.386 23 C 0.031 3.969 24 C -0.091 4.091 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.036 0.964 32 H 0.266 0.734 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 7.245 5.659 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.322 5.322 4 C 0.082 3.918 5 C -0.579 4.579 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.528 5.528 9 Si 0.695 3.305 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.317 3.683 14 O -0.449 6.449 15 C -0.126 4.126 16 H 0.132 0.868 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.175 4.175 20 C 0.031 3.969 21 H 0.082 0.918 22 O -0.305 6.305 23 C -0.066 4.066 24 C -0.129 4.129 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.674 6.892 6.204 12.036 hybrid contribution -0.112 0.651 -1.200 1.369 sum -7.786 7.542 5.004 11.940 Atomic orbital electron populations 1.22126 0.96925 1.01357 1.01788 1.21253 0.93162 0.83764 1.02740 1.47909 1.63303 1.13175 1.07818 1.19958 0.96977 0.93485 0.81422 1.21416 0.91144 1.37517 1.07840 0.90420 1.24875 0.94790 0.95554 0.97483 1.69892 1.10216 1.44988 1.27692 0.86964 0.81251 0.80815 0.81479 1.19724 1.20885 1.18842 1.20302 0.76085 0.88765 0.83176 1.90589 1.52685 1.70470 1.31157 1.21234 1.00951 0.92084 0.98332 0.86829 1.21600 0.97021 0.94415 1.01953 1.21488 1.01723 0.95814 0.96314 1.22019 0.99153 0.99254 0.97112 1.22196 0.96542 0.94714 0.83457 0.91810 1.87896 1.61149 1.53727 1.27710 1.22754 0.91621 0.89977 1.02216 1.21299 1.02830 0.92855 0.95903 0.92288 0.92711 0.92860 0.90391 0.91013 0.94920 0.94615 0.92365 0.90590 0.91813 0.91281 0.91556 0.92180 0.91227 0.90021 0.93981 0.94345 0.90697 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.20 37.16 0.38 -2.09 16 2 C 0.11 2.07 6.10 -4.04 -0.02 2.04 16 3 N -0.59 -12.12 2.48 -175.06 -0.43 -12.55 16 4 C 0.20 4.39 3.78 -5.20 -0.02 4.38 16 5 C -0.54 -14.08 9.32 -34.44 -0.32 -14.40 16 6 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 7 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 8 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 9 Si 0.87 19.36 27.47 -169.99 -4.67 14.69 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 13 C 0.53 10.94 6.82 -10.98 -0.07 10.86 16 14 O -0.57 -12.92 15.62 5.56 0.09 -12.84 16 15 C -0.10 -1.89 1.69 -91.77 -0.16 -2.05 16 16 H 0.11 2.26 6.98 -51.93 -0.36 1.90 16 17 C -0.11 -1.72 4.90 -26.73 -0.13 -1.85 16 18 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 19 C -0.14 -1.77 5.54 -26.73 -0.15 -1.92 16 20 C 0.09 1.31 2.61 -26.73 -0.07 1.24 16 21 H 0.06 0.94 7.78 -51.93 -0.40 0.54 16 22 O -0.39 -5.73 10.35 -35.23 -0.36 -6.10 16 23 C 0.03 0.35 10.82 101.05 1.09 1.44 16 24 C -0.09 -1.55 4.23 -26.73 -0.11 -1.67 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 29 H 0.07 1.35 7.51 -51.93 -0.39 0.96 16 30 H 0.03 0.70 7.09 -51.93 -0.37 0.33 16 31 H 0.04 0.74 4.01 -51.93 -0.21 0.53 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.08 1.19 5.86 -51.93 -0.30 0.89 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 41 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 42 H 0.07 1.32 7.96 -51.93 -0.41 0.91 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -29.85 336.72 -6.87 -36.72 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.50 Total: 3.56 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 0.16 Total: -3.76 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.34 Total: -37.36 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.28 Total: -18.93 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.85 -6.87 -36.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432893101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.285 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds