Wall clock time and date at job start Mon Mar 30 2020 01:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47521 * 2 1 4 4 C 1.46497 * 120.00450 * 264.45814 * 3 2 1 5 5 C 1.50699 * 109.47245 * 264.82723 * 4 3 2 6 6 H 1.08001 * 120.00084 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00131 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00186 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99937 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47683 * 89.99408 * 9 7 5 11 11 H 1.48502 * 109.47305 * 209.99609 * 9 7 5 12 12 H 1.48505 * 109.47232 * 329.99296 * 9 7 5 13 13 C 1.34781 * 119.99595 * 84.45448 * 3 2 1 14 14 O 1.21279 * 120.00197 * 6.11577 * 13 3 2 15 15 C 1.50700 * 119.99730 * 186.10957 * 13 3 2 16 16 H 1.09003 * 109.47682 * 312.30619 * 15 13 3 17 17 C 1.53008 * 109.46807 * 72.30270 * 15 13 3 18 18 C 1.53000 * 109.46867 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47367 * 299.99993 * 18 17 15 20 20 C 1.52995 * 109.47019 * 59.99991 * 19 18 17 21 21 H 1.09000 * 109.47124 * 60.00410 * 20 19 18 22 22 O 1.42904 * 109.47086 * 179.97438 * 20 19 18 23 23 C 1.42895 * 114.00458 * 270.00198 * 22 20 19 24 24 C 1.53000 * 109.47587 * 300.00190 * 20 19 18 25 25 H 1.08995 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46834 * 299.99911 * 1 2 3 27 27 H 1.08997 * 109.46997 * 59.99972 * 1 2 3 28 28 H 1.09005 * 109.47131 * 240.00019 * 2 1 3 29 29 H 1.09006 * 109.47558 * 120.00580 * 2 1 3 30 30 H 1.09005 * 109.46766 * 24.82434 * 4 3 2 31 31 H 1.09006 * 109.47601 * 144.82635 * 4 3 2 32 32 H 0.97001 * 120.00278 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47324 * 299.99488 * 17 15 13 34 34 H 1.09003 * 109.47336 * 60.00189 * 17 15 13 35 35 H 1.09000 * 109.47326 * 59.99919 * 18 17 15 36 36 H 1.09004 * 109.47125 * 180.02562 * 18 17 15 37 37 H 1.08999 * 109.47356 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46837 * 300.00226 * 19 18 17 39 39 H 1.09003 * 109.47332 * 180.02562 * 23 22 20 40 40 H 1.09003 * 109.47250 * 300.00331 * 23 22 20 41 41 H 1.09004 * 109.46847 * 59.99622 * 23 22 20 42 42 H 1.09000 * 109.47068 * 300.00254 * 24 20 19 43 43 H 1.08995 * 109.47603 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3782 2.0310 -1.2627 5 6 3.8605 1.8909 -1.4953 6 1 4.4734 1.3703 -0.7744 7 6 4.4343 2.4274 -2.6285 8 7 5.7279 2.3056 -2.8312 9 14 3.3743 3.3285 -3.8750 10 1 3.3144 4.7701 -3.5239 11 1 3.9627 3.1730 -5.2296 12 1 2.0030 2.7586 -3.8627 13 6 2.1367 2.0540 1.1618 14 8 1.9458 1.4838 2.2150 15 6 2.5063 3.5150 1.1521 16 1 3.3594 3.6696 0.4915 17 6 1.3178 4.3383 0.6515 18 6 1.6928 5.8216 0.6422 19 6 2.0585 6.2642 2.0604 20 6 3.2469 5.4408 2.5610 21 1 4.1002 5.5958 1.9008 22 8 3.5889 5.8545 3.8855 23 6 4.5496 6.9111 3.9346 24 6 2.8720 3.9575 2.5703 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8356 1.5587 -2.0818 31 1 2.1162 3.0880 -1.2150 32 1 6.1316 2.6827 -3.6286 33 1 1.0571 4.0229 -0.3587 34 1 0.4646 4.1838 1.3120 35 1 2.5461 5.9766 -0.0181 36 1 0.8460 6.4083 0.2860 37 1 2.3253 7.3210 2.0539 38 1 1.2052 6.1092 2.7207 39 1 4.7558 7.1668 4.9740 40 1 5.4711 6.5871 3.4508 41 1 4.1552 7.7852 3.4163 42 1 2.0187 3.8025 3.2306 43 1 3.7185 3.3709 2.9274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432893101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:17 Heat of formation + Delta-G solvation = -121.310414 kcal Electronic energy + Delta-G solvation = -22195.280342 eV Core-core repulsion = 19046.004770 eV Total energy + Delta-G solvation = -3149.275572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41697 -39.64766 -37.21162 -36.98877 -34.70425 -32.75547 -31.62052 -30.81621 -29.38404 -27.32522 -25.37972 -24.53062 -23.32578 -23.11627 -21.03070 -19.79707 -19.07485 -18.12525 -17.55827 -16.87162 -16.48164 -16.27076 -16.05042 -15.96401 -15.42914 -14.79350 -14.73394 -14.63959 -14.30777 -14.14870 -13.68464 -13.53826 -13.32099 -13.25531 -13.02845 -12.67234 -12.60118 -12.44400 -12.29913 -12.06387 -11.99526 -11.85516 -11.71687 -11.60902 -11.45919 -11.40608 -10.80181 -10.66392 -10.32168 -9.43480 -8.29472 -6.37581 1.41086 1.43061 1.52706 1.72158 2.24460 2.35473 2.81977 3.04284 3.53643 3.72528 3.93027 4.00999 4.14680 4.18144 4.29908 4.36747 4.38776 4.43953 4.50421 4.51969 4.55253 4.59601 4.62631 4.73312 4.80444 4.85282 4.90443 4.96774 5.02797 5.06347 5.15687 5.17083 5.23701 5.27326 5.30793 5.43665 5.47318 5.75199 6.19657 6.27995 6.60325 6.69631 7.23601 7.35308 8.87151 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.007349 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.956608 B = 3808.943724 C = 4827.577112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.105 3.895 3 N -0.597 5.597 4 C 0.212 3.788 5 C -0.543 4.543 6 H 0.022 0.978 7 C 0.019 3.981 8 N -0.944 5.944 9 Si 0.939 3.061 10 H -0.254 1.254 11 H -0.288 1.288 12 H -0.236 1.236 13 C 0.519 3.481 14 O -0.595 6.595 15 C -0.100 4.100 16 H 0.091 0.909 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.131 4.131 20 C 0.091 3.909 21 H 0.060 0.940 22 O -0.407 6.407 23 C 0.024 3.976 24 C -0.086 4.086 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.268 0.732 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 9.391 4.590 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 N -0.326 5.326 4 C 0.090 3.910 5 C -0.582 4.582 6 H 0.040 0.960 7 C -0.180 4.180 8 N -0.584 5.584 9 Si 0.761 3.239 10 H -0.178 1.178 11 H -0.214 1.214 12 H -0.159 1.159 13 C 0.309 3.691 14 O -0.478 6.478 15 C -0.121 4.121 16 H 0.109 0.891 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.168 4.168 20 C 0.034 3.966 21 H 0.078 0.922 22 O -0.327 6.327 23 C -0.072 4.072 24 C -0.124 4.124 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.289 9.028 5.151 14.625 hybrid contribution 0.829 -0.130 -0.756 1.130 sum -9.459 8.898 4.395 13.710 Atomic orbital electron populations 1.22007 0.93912 1.03176 1.01718 1.21457 0.95618 0.82592 1.02129 1.48023 1.63102 1.14040 1.07460 1.19828 0.93918 0.94955 0.82252 1.21533 0.93151 1.36735 1.06771 0.95967 1.25828 0.96031 0.96364 0.99765 1.70068 1.12742 1.46786 1.28754 0.85837 0.80251 0.80191 0.77628 1.17786 1.21361 1.15854 1.20852 0.75517 0.89926 0.82840 1.90563 1.53970 1.71284 1.31952 1.21208 1.01490 0.90954 0.98482 0.89065 1.21614 0.95655 0.95507 1.01801 1.21501 1.02700 0.94293 0.96412 1.21970 0.98029 0.99968 0.96847 1.22121 0.97524 0.93253 0.83735 0.92226 1.87857 1.62147 1.55098 1.27575 1.22979 0.90888 0.89541 1.03784 1.21219 1.01370 0.94717 0.95113 0.89588 0.93789 0.91738 0.90162 0.92536 0.93436 0.92512 0.92268 0.90517 0.91020 0.91758 0.88575 0.89952 0.90943 0.88199 0.94170 0.92539 0.91370 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 10.20 71.98 0.73 -3.51 16 2 C 0.10 3.78 6.10 86.38 0.53 4.31 16 3 N -0.60 -24.50 2.48 -826.14 -2.05 -26.55 16 4 C 0.21 8.98 3.78 85.63 0.32 9.30 16 5 C -0.54 -28.99 9.32 25.60 0.24 -28.75 16 6 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 7 C 0.02 1.01 5.47 84.66 0.46 1.47 16 8 N -0.94 -55.83 13.96 21.45 0.30 -55.53 16 9 Si 0.94 38.53 27.47 68.60 1.88 40.42 16 10 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 11 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.24 -8.56 6.54 99.48 0.65 -7.91 16 13 C 0.52 21.94 6.82 87.66 0.60 22.53 16 14 O -0.60 -27.92 15.62 -3.02 -0.05 -27.97 16 15 C -0.10 -3.64 1.69 -11.54 -0.02 -3.66 16 16 H 0.09 3.74 6.98 -2.39 -0.02 3.72 16 17 C -0.11 -3.08 4.90 30.60 0.15 -2.93 16 18 C -0.11 -2.57 5.92 30.59 0.18 -2.39 16 19 C -0.13 -3.00 5.54 30.59 0.17 -2.83 16 20 C 0.09 2.64 2.61 30.59 0.08 2.72 16 21 H 0.06 1.75 7.78 -2.39 -0.02 1.73 16 22 O -0.41 -11.77 10.35 -148.98 -1.54 -13.31 16 23 C 0.02 0.50 10.82 113.37 1.23 1.73 16 24 C -0.09 -3.02 4.23 30.59 0.13 -2.89 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 2.82 8.03 -2.38 -0.02 2.80 16 29 H 0.06 2.19 7.51 -2.38 -0.02 2.17 16 30 H 0.05 1.90 7.09 -2.38 -0.02 1.89 16 31 H 0.06 2.20 4.01 -2.38 -0.01 2.19 16 32 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.08 2.17 5.86 -2.39 -0.01 2.16 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.57 7.87 -2.39 -0.02 1.55 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 41 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 42 H 0.07 2.45 7.96 -2.39 -0.02 2.43 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -67.40 336.72 4.25 -63.14 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.91 Total: 24.70 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 4.80 Total: -4.90 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.75 Total: -82.08 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.59 Total: -41.28 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.88 Total: 40.42 kcal Total: -67.40 4.25 -63.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432893101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.167 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds