Wall clock time and date at job start Mon Mar 30 2020 01:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46880 * 2 1 4 4 C 1.46504 * 119.99796 * 94.75765 * 3 2 1 5 5 C 1.50702 * 109.47176 * 84.43638 * 4 3 2 6 6 H 1.07997 * 120.00099 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00033 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00337 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46837 * 60.00275 * 9 7 5 11 11 H 1.48492 * 109.47214 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47018 * 300.00477 * 9 7 5 13 13 C 1.34773 * 120.00095 * 274.74867 * 3 2 1 14 14 O 1.21282 * 120.00355 * 5.15063 * 13 3 2 15 15 C 1.50707 * 119.99889 * 185.14635 * 13 3 2 16 16 H 1.08997 * 109.47144 * 313.76534 * 15 13 3 17 17 C 1.52992 * 109.47029 * 73.76805 * 15 13 3 18 18 C 1.52997 * 109.47381 * 60.00083 * 17 15 13 19 19 C 1.53000 * 109.46974 * 59.99864 * 18 17 15 20 20 C 1.53000 * 109.47234 * 299.99790 * 19 18 17 21 21 H 1.08996 * 109.47161 * 300.00638 * 20 19 18 22 22 O 1.42900 * 109.47089 * 179.97438 * 20 19 18 23 23 C 1.42896 * 113.99824 * 90.00397 * 22 20 19 24 24 C 1.52998 * 109.46901 * 193.77093 * 15 13 3 25 25 H 1.08994 * 109.47044 * 295.02816 * 1 2 3 26 26 H 1.09003 * 109.46962 * 55.02695 * 1 2 3 27 27 H 1.09000 * 109.47254 * 175.02358 * 1 2 3 28 28 H 1.09001 * 109.46900 * 240.00092 * 2 1 3 29 29 H 1.08996 * 109.46923 * 120.00414 * 2 1 3 30 30 H 1.08998 * 109.46892 * 204.43678 * 4 3 2 31 31 H 1.08999 * 109.46910 * 324.44048 * 4 3 2 32 32 H 0.96997 * 119.99827 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.47015 * 180.02562 * 17 15 13 34 34 H 1.09004 * 109.47504 * 299.99665 * 17 15 13 35 35 H 1.09005 * 109.47160 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.47289 * 299.99778 * 18 17 15 37 37 H 1.08996 * 109.47567 * 60.00179 * 19 18 17 38 38 H 1.09007 * 109.46950 * 180.02562 * 19 18 17 39 39 H 1.08997 * 109.47209 * 179.97438 * 23 22 20 40 40 H 1.09006 * 109.47449 * 300.00126 * 23 22 20 41 41 H 1.09003 * 109.47316 * 59.99864 * 23 22 20 42 42 H 1.08997 * 109.47842 * 60.00011 * 24 15 13 43 43 H 1.09004 * 109.47220 * 180.02562 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3617 2.0367 1.2644 5 6 3.7737 1.6774 1.6493 6 1 4.3572 1.0263 1.0153 7 6 4.3211 2.1808 2.8103 8 7 3.6107 2.9742 3.5821 9 14 6.0716 1.7361 3.2871 10 1 7.0045 2.1899 2.2245 11 1 6.4195 2.4004 4.5688 12 1 6.1821 0.2638 3.4472 13 6 2.1518 2.0488 -1.1631 14 8 1.7805 1.5408 -2.2000 15 6 2.7624 3.4266 -1.1754 16 1 2.3219 4.0263 -0.3790 17 6 4.2725 3.3171 -0.9557 18 6 4.8909 2.4753 -2.0737 19 6 4.6189 3.1417 -3.4238 20 6 3.1087 3.2511 -3.6436 21 1 2.6671 2.2546 -3.6346 22 8 2.8547 3.8741 -4.9043 23 6 2.7506 2.9570 -5.9952 24 6 2.4903 4.0929 -2.5255 25 1 -0.3633 0.4347 0.9311 26 1 -0.3633 0.5891 -0.8421 27 1 -0.3634 -1.0238 -0.0891 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.2808 3.1174 1.1471 31 1 1.6766 1.7036 2.0441 32 1 3.9959 3.3286 4.3987 33 1 4.7141 4.3137 -0.9642 34 1 4.4663 2.8424 0.0062 35 1 5.9668 2.3977 -1.9174 36 1 4.4493 1.4788 -2.0649 37 1 5.0604 4.1382 -3.4328 38 1 5.0590 2.5417 -4.2204 39 1 2.5571 3.5078 -6.9157 40 1 3.6833 2.4014 -6.0931 41 1 1.9317 2.2621 -5.8090 42 1 1.4145 4.1709 -2.6821 43 1 2.9323 5.0893 -2.5346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432893102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:19 Heat of formation + Delta-G solvation = -100.308376 kcal Electronic energy + Delta-G solvation = -22620.787792 eV Core-core repulsion = 19472.422936 eV Total energy + Delta-G solvation = -3148.364856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12948 -37.90403 -35.71286 -35.17429 -32.81881 -31.13227 -30.14021 -29.14427 -27.10928 -26.14415 -23.81457 -23.05555 -21.87997 -21.62617 -20.10214 -17.82198 -16.67210 -16.44945 -15.82975 -15.46319 -15.31135 -14.77868 -14.43023 -14.25421 -13.88476 -13.45680 -13.07093 -12.87106 -12.62258 -12.39664 -12.03439 -11.87278 -11.72947 -11.57935 -11.55371 -11.47990 -11.16986 -10.98521 -10.79607 -10.48779 -10.47476 -10.42505 -10.10896 -9.97205 -9.88981 -9.68400 -9.06096 -8.66133 -8.47638 -7.72096 -6.23808 -4.29469 3.20296 3.26275 3.27599 3.41021 3.94601 4.09931 4.28532 5.07444 5.16575 5.18761 5.35647 5.49124 5.53443 5.58725 5.64005 5.75520 5.78346 5.80888 5.82197 5.88278 5.93608 6.00864 6.07481 6.11719 6.26479 6.34544 6.39842 6.43289 6.53039 6.59199 6.66224 6.71506 6.81982 6.84641 7.14394 7.22903 7.54175 7.60847 7.70878 8.00275 8.36547 8.74043 9.03225 9.35875 10.82348 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.006841 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.146085 B = 4091.851735 C = 4978.011785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.118 3.882 3 N -0.593 5.593 4 C 0.234 3.766 5 C -0.535 4.535 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.523 3.477 14 O -0.573 6.573 15 C -0.097 4.097 16 H 0.098 0.902 17 C -0.133 4.133 18 C -0.113 4.113 19 C -0.136 4.136 20 C 0.066 3.934 21 H 0.110 0.890 22 O -0.395 6.395 23 C 0.036 3.964 24 C -0.092 4.092 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.267 0.733 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -0.659 -9.415 9.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.323 5.323 4 C 0.114 3.886 5 C -0.573 4.573 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.720 3.280 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.312 3.688 14 O -0.456 6.456 15 C -0.118 4.118 16 H 0.116 0.884 17 C -0.170 4.170 18 C -0.151 4.151 19 C -0.174 4.174 20 C 0.010 3.990 21 H 0.127 0.873 22 O -0.314 6.314 23 C -0.061 4.061 24 C -0.130 4.130 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.221 -0.622 -9.735 9.831 hybrid contribution 1.066 -0.414 0.501 1.248 sum -0.156 -1.036 -9.234 9.294 Atomic orbital electron populations 1.22100 0.97001 1.01135 1.01896 1.21202 0.93356 0.83881 1.02152 1.48269 1.62521 1.13185 1.08282 1.19498 0.95996 0.93590 0.79477 1.21369 0.98412 1.30528 1.06994 0.91828 1.24937 0.98015 0.94735 0.95958 1.69910 1.37027 1.31867 1.13690 0.86634 0.84526 0.78831 0.78020 1.19880 1.21136 1.20136 1.20492 0.77599 0.87700 0.83034 1.90408 1.52459 1.70552 1.32134 1.21205 0.98317 0.94285 0.97961 0.88409 1.21951 0.91635 1.00879 1.02500 1.21453 1.00299 0.99459 0.93895 1.22021 0.97045 1.00769 0.97546 1.22833 0.94338 0.99602 0.82239 0.87302 1.87797 1.92684 1.34295 1.16605 1.22657 0.99672 0.93856 0.89911 1.21354 1.00790 0.98443 0.92387 0.92788 0.92612 0.92645 0.91690 0.90367 0.94053 0.94849 0.92372 0.92090 0.85874 0.92160 0.92145 0.92045 0.92957 0.90542 0.94687 0.94148 0.91781 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.21 37.16 0.38 -2.22 16 2 C 0.12 2.13 6.06 -4.04 -0.02 2.10 16 3 N -0.59 -12.03 2.47 -175.05 -0.43 -12.46 16 4 C 0.23 5.29 4.76 -5.19 -0.02 5.27 16 5 C -0.53 -12.93 6.59 -34.44 -0.23 -13.16 16 6 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -23.42 13.29 55.43 0.74 -22.68 16 9 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.52 10.45 5.50 -10.98 -0.06 10.39 16 14 O -0.57 -12.06 12.92 5.56 0.07 -11.99 16 15 C -0.10 -1.77 2.23 -91.77 -0.20 -1.98 16 16 H 0.10 1.81 6.48 -51.93 -0.34 1.47 16 17 C -0.13 -2.42 5.35 -26.74 -0.14 -2.56 16 18 C -0.11 -1.94 5.70 -26.73 -0.15 -2.09 16 19 C -0.14 -2.17 5.54 -26.73 -0.15 -2.32 16 20 C 0.07 1.14 2.32 -26.73 -0.06 1.08 16 21 H 0.11 2.08 4.71 -51.93 -0.24 1.84 16 22 O -0.39 -6.55 10.35 -35.23 -0.36 -6.92 16 23 C 0.04 0.48 10.82 101.05 1.09 1.57 16 24 C -0.09 -1.57 4.86 -26.73 -0.13 -1.70 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.18 7.65 -51.93 -0.40 0.78 16 29 H 0.08 1.40 8.04 -51.93 -0.42 0.99 16 30 H 0.04 0.97 5.92 -51.93 -0.31 0.66 16 31 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.12 2.59 4.37 -51.93 -0.23 2.36 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.13 7.20 -51.93 -0.37 0.75 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.78 7.87 -51.93 -0.41 0.37 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.43 7.87 -51.93 -0.41 0.02 16 41 H 0.04 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -26.47 330.76 -7.13 -33.60 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.30 Total: 4.85 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 0.20 Total: -4.03 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.30 Total: -35.14 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.29 Total: -18.91 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.47 -7.13 -33.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432893102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.712 kcal (2) G-P(sol) polarization free energy of solvation -26.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds