Wall clock time and date at job start Mon Mar 30 2020 01:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46880 * 2 1 4 4 C 1.46504 * 119.99796 * 94.75765 * 3 2 1 5 5 C 1.50702 * 109.47176 * 84.43638 * 4 3 2 6 6 H 1.07997 * 120.00099 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00033 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00337 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46837 * 60.00275 * 9 7 5 11 11 H 1.48492 * 109.47214 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47018 * 300.00477 * 9 7 5 13 13 C 1.34773 * 120.00095 * 274.74867 * 3 2 1 14 14 O 1.21282 * 120.00355 * 5.15063 * 13 3 2 15 15 C 1.50707 * 119.99889 * 185.14635 * 13 3 2 16 16 H 1.08997 * 109.47144 * 313.76534 * 15 13 3 17 17 C 1.52992 * 109.47029 * 73.76805 * 15 13 3 18 18 C 1.52997 * 109.47381 * 60.00083 * 17 15 13 19 19 C 1.53000 * 109.46974 * 59.99864 * 18 17 15 20 20 C 1.53000 * 109.47234 * 299.99790 * 19 18 17 21 21 H 1.08996 * 109.47161 * 300.00638 * 20 19 18 22 22 O 1.42900 * 109.47089 * 179.97438 * 20 19 18 23 23 C 1.42896 * 113.99824 * 90.00397 * 22 20 19 24 24 C 1.52998 * 109.46901 * 193.77093 * 15 13 3 25 25 H 1.08994 * 109.47044 * 295.02816 * 1 2 3 26 26 H 1.09003 * 109.46962 * 55.02695 * 1 2 3 27 27 H 1.09000 * 109.47254 * 175.02358 * 1 2 3 28 28 H 1.09001 * 109.46900 * 240.00092 * 2 1 3 29 29 H 1.08996 * 109.46923 * 120.00414 * 2 1 3 30 30 H 1.08998 * 109.46892 * 204.43678 * 4 3 2 31 31 H 1.08999 * 109.46910 * 324.44048 * 4 3 2 32 32 H 0.96997 * 119.99827 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.47015 * 180.02562 * 17 15 13 34 34 H 1.09004 * 109.47504 * 299.99665 * 17 15 13 35 35 H 1.09005 * 109.47160 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.47289 * 299.99778 * 18 17 15 37 37 H 1.08996 * 109.47567 * 60.00179 * 19 18 17 38 38 H 1.09007 * 109.46950 * 180.02562 * 19 18 17 39 39 H 1.08997 * 109.47209 * 179.97438 * 23 22 20 40 40 H 1.09006 * 109.47449 * 300.00126 * 23 22 20 41 41 H 1.09003 * 109.47316 * 59.99864 * 23 22 20 42 42 H 1.08997 * 109.47842 * 60.00011 * 24 15 13 43 43 H 1.09004 * 109.47220 * 180.02562 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3617 2.0367 1.2644 5 6 3.7737 1.6774 1.6493 6 1 4.3572 1.0263 1.0153 7 6 4.3211 2.1808 2.8103 8 7 3.6107 2.9742 3.5821 9 14 6.0716 1.7361 3.2871 10 1 7.0045 2.1899 2.2245 11 1 6.4195 2.4004 4.5688 12 1 6.1821 0.2638 3.4472 13 6 2.1518 2.0488 -1.1631 14 8 1.7805 1.5408 -2.2000 15 6 2.7624 3.4266 -1.1754 16 1 2.3219 4.0263 -0.3790 17 6 4.2725 3.3171 -0.9557 18 6 4.8909 2.4753 -2.0737 19 6 4.6189 3.1417 -3.4238 20 6 3.1087 3.2511 -3.6436 21 1 2.6671 2.2546 -3.6346 22 8 2.8547 3.8741 -4.9043 23 6 2.7506 2.9570 -5.9952 24 6 2.4903 4.0929 -2.5255 25 1 -0.3633 0.4347 0.9311 26 1 -0.3633 0.5891 -0.8421 27 1 -0.3634 -1.0238 -0.0891 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.2808 3.1174 1.1471 31 1 1.6766 1.7036 2.0441 32 1 3.9959 3.3286 4.3987 33 1 4.7141 4.3137 -0.9642 34 1 4.4663 2.8424 0.0062 35 1 5.9668 2.3977 -1.9174 36 1 4.4493 1.4788 -2.0649 37 1 5.0604 4.1382 -3.4328 38 1 5.0590 2.5417 -4.2204 39 1 2.5571 3.5078 -6.9157 40 1 3.6833 2.4014 -6.0931 41 1 1.9317 2.2621 -5.8090 42 1 1.4145 4.1709 -2.6821 43 1 2.9323 5.0893 -2.5346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432893102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:18 Heat of formation + Delta-G solvation = -114.058920 kcal Electronic energy + Delta-G solvation = -22621.384060 eV Core-core repulsion = 19472.422936 eV Total energy + Delta-G solvation = -3148.961124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.64971 -39.28068 -37.10176 -36.82112 -34.65883 -32.60401 -31.55413 -30.53524 -28.92845 -27.26384 -25.25258 -24.90650 -23.26954 -23.02603 -21.52891 -19.44951 -18.46751 -17.95899 -17.31450 -17.04214 -16.64764 -16.26549 -15.95444 -15.73657 -15.24840 -14.87880 -14.46533 -14.39602 -14.14968 -13.96151 -13.53266 -13.33473 -13.13793 -13.08563 -13.04403 -12.89032 -12.65443 -12.56737 -12.43801 -12.10474 -11.88350 -11.83450 -11.72451 -11.58420 -11.34714 -11.23019 -10.56013 -10.34796 -10.04897 -9.40240 -8.15808 -6.26441 1.45653 1.47545 1.53694 1.80530 2.34028 2.48811 2.87260 3.14398 3.69970 3.82580 3.92878 4.16585 4.23806 4.31397 4.36548 4.40955 4.47907 4.51855 4.57120 4.58453 4.64319 4.68540 4.75557 4.83956 4.85715 4.97518 5.00370 5.03777 5.09088 5.18475 5.20503 5.25843 5.33927 5.35992 5.45954 5.66218 5.71585 5.91718 6.10330 6.37277 6.64984 6.86494 7.35618 7.47268 8.89511 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.006841 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.146085 B = 4091.851735 C = 4978.011785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.112 3.888 3 N -0.598 5.598 4 C 0.249 3.751 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.026 3.974 8 N -0.919 5.919 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.520 3.480 14 O -0.583 6.583 15 C -0.095 4.095 16 H 0.092 0.908 17 C -0.129 4.129 18 C -0.108 4.108 19 C -0.129 4.129 20 C 0.070 3.930 21 H 0.088 0.912 22 O -0.408 6.408 23 C 0.030 3.970 24 C -0.088 4.088 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.016 0.984 32 H 0.267 0.733 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.035 0.965 42 H 0.057 0.943 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 -0.697 -10.487 10.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 N -0.328 5.328 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.174 4.174 8 N -0.558 5.558 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.310 3.690 14 O -0.466 6.466 15 C -0.116 4.116 16 H 0.110 0.890 17 C -0.167 4.167 18 C -0.146 4.146 19 C -0.167 4.167 20 C 0.013 3.987 21 H 0.106 0.894 22 O -0.327 6.327 23 C -0.066 4.066 24 C -0.126 4.126 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.367 -0.677 -10.827 10.854 hybrid contribution 0.752 -0.438 0.768 1.160 sum 0.385 -1.115 -10.059 10.128 Atomic orbital electron populations 1.21998 0.95146 1.02734 1.01140 1.21353 0.94894 0.82761 1.02058 1.48288 1.62810 1.14013 1.07647 1.19159 0.94975 0.93084 0.79936 1.21474 0.98865 1.29793 1.06668 0.92352 1.25552 1.01100 0.94743 0.96028 1.70003 1.38487 1.33113 1.14166 0.85771 0.80844 0.78440 0.77676 1.19206 1.21190 1.19985 1.20779 0.77334 0.88249 0.82657 1.90414 1.52880 1.71025 1.32284 1.21201 0.98342 0.93299 0.98729 0.88965 1.21857 0.91635 1.01626 1.01534 1.21394 1.00806 0.98150 0.94223 1.21953 0.96284 1.01400 0.97033 1.22662 0.94925 0.98332 0.82745 0.89443 1.87767 1.92804 1.35281 1.16866 1.22868 1.00035 0.93953 0.89794 1.21324 1.00622 0.99041 0.91651 0.93022 0.93880 0.89753 0.91722 0.90425 0.94992 0.96598 0.92431 0.90585 0.88548 0.90802 0.94197 0.90981 0.91729 0.87952 0.93738 0.94666 0.92385 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 10.21 71.98 0.73 -3.98 16 2 C 0.11 4.04 6.06 86.38 0.52 4.56 16 3 N -0.60 -24.44 2.47 -826.14 -2.04 -26.48 16 4 C 0.25 11.44 4.76 85.63 0.41 11.84 16 5 C -0.53 -25.71 6.59 25.60 0.17 -25.54 16 6 H 0.06 2.86 7.65 -2.91 -0.02 2.84 16 7 C 0.03 1.32 5.46 84.65 0.46 1.78 16 8 N -0.92 -48.76 13.29 21.45 0.28 -48.48 16 9 Si 0.95 39.95 29.54 68.60 2.03 41.98 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 C 0.52 20.84 5.50 87.66 0.48 21.33 16 14 O -0.58 -24.52 12.92 -3.04 -0.04 -24.56 16 15 C -0.09 -3.44 2.23 -11.54 -0.03 -3.47 16 16 H 0.09 3.44 6.48 -2.39 -0.02 3.42 16 17 C -0.13 -4.61 5.35 30.59 0.16 -4.45 16 18 C -0.11 -3.55 5.70 30.59 0.17 -3.37 16 19 C -0.13 -3.85 5.54 30.59 0.17 -3.68 16 20 C 0.07 2.31 2.32 30.60 0.07 2.38 16 21 H 0.09 3.29 4.71 -2.39 -0.01 3.28 16 22 O -0.41 -12.77 10.35 -148.98 -1.54 -14.31 16 23 C 0.03 0.73 10.82 113.37 1.23 1.95 16 24 C -0.09 -2.93 4.86 30.60 0.15 -2.78 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 2.32 7.65 -2.39 -0.02 2.30 16 29 H 0.08 2.77 8.04 -2.39 -0.02 2.75 16 30 H 0.03 1.53 5.92 -2.39 -0.01 1.52 16 31 H 0.02 0.78 8.11 -2.39 -0.02 0.77 16 32 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 33 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.10 4.02 4.37 -2.39 -0.01 4.01 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.04 1.46 7.20 -2.39 -0.02 1.44 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.77 7.87 -2.38 -0.02 1.75 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 0.99 7.87 -2.38 -0.02 0.97 16 41 H 0.03 0.89 8.09 -2.39 -0.02 0.87 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -55.17 330.76 4.37 -50.79 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.97 Total: 24.47 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.71 Total: -3.42 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.75 Total: -74.95 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.58 Total: -38.87 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -55.17 4.37 -50.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432893102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.264 kcal (2) G-P(sol) polarization free energy of solvation -55.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds