Wall clock time and date at job start Mon Mar 30 2020 01:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46862 * 2 1 4 4 C 1.46501 * 119.99763 * 264.44763 * 3 2 1 5 5 C 1.50695 * 109.47419 * 275.63229 * 4 3 2 6 6 H 1.08001 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00101 * 180.02562 * 5 4 3 8 8 N 1.31522 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00182 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46982 * 119.99847 * 9 7 5 12 12 H 1.48495 * 109.47224 * 240.00084 * 9 7 5 13 13 C 1.34778 * 119.99995 * 84.45225 * 3 2 1 14 14 O 1.21278 * 119.99330 * 3.84829 * 13 3 2 15 15 C 1.50694 * 120.00030 * 183.84687 * 13 3 2 16 16 H 1.09002 * 109.46856 * 48.36003 * 15 13 3 17 17 C 1.53006 * 109.47269 * 288.36241 * 15 13 3 18 18 C 1.52997 * 109.47053 * 300.00309 * 17 15 13 19 19 C 1.53007 * 109.46848 * 299.99632 * 18 17 15 20 20 C 1.52998 * 109.46786 * 60.00410 * 19 18 17 21 21 H 1.09002 * 109.47451 * 60.00197 * 20 19 18 22 22 O 1.42901 * 109.46790 * 179.97438 * 20 19 18 23 23 C 1.42896 * 114.00334 * 269.99993 * 22 20 19 24 24 C 1.52997 * 109.47092 * 299.99440 * 20 19 18 25 25 H 1.09000 * 109.47325 * 304.88957 * 1 2 3 26 26 H 1.08997 * 109.47575 * 64.89266 * 1 2 3 27 27 H 1.09006 * 109.47165 * 184.88918 * 1 2 3 28 28 H 1.09003 * 109.47089 * 240.00312 * 2 1 3 29 29 H 1.08993 * 109.47584 * 120.00136 * 2 1 3 30 30 H 1.09004 * 109.47327 * 35.63832 * 4 3 2 31 31 H 1.09001 * 109.46543 * 155.63013 * 4 3 2 32 32 H 0.96994 * 120.00240 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47198 * 179.97438 * 17 15 13 34 34 H 1.09002 * 109.46792 * 59.99791 * 17 15 13 35 35 H 1.08997 * 109.46940 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.47071 * 59.99634 * 18 17 15 37 37 H 1.08993 * 109.47012 * 300.00384 * 19 18 17 38 38 H 1.08997 * 109.46600 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47764 * 180.02562 * 23 22 20 40 40 H 1.09007 * 109.47088 * 300.00027 * 23 22 20 41 41 H 1.09002 * 109.47280 * 59.99724 * 23 22 20 42 42 H 1.09005 * 109.47172 * 179.97438 * 24 20 19 43 43 H 1.08993 * 109.47628 * 300.00591 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3781 2.0309 -1.2628 5 6 3.7944 1.6686 -1.6285 6 1 4.3692 1.0196 -0.9844 7 6 4.3568 2.1664 -2.7847 8 7 3.6573 2.9579 -3.5683 9 14 6.1127 1.7178 -3.2376 10 1 6.6782 0.8206 -2.1981 11 1 6.1232 1.0226 -4.5498 12 1 6.9322 2.9530 -3.3252 13 6 2.1365 2.0542 1.1617 14 8 1.9055 1.4947 2.2127 15 6 2.5556 3.5017 1.1547 16 1 1.9608 4.0486 0.4231 17 6 4.0369 3.6020 0.7852 18 6 4.8718 2.8343 1.8120 19 6 4.6509 3.4359 3.2014 20 6 3.1696 3.3356 3.5708 21 1 2.8665 2.2886 3.5760 22 8 2.9634 3.8970 4.8687 23 6 3.0933 2.9561 5.9363 24 6 2.3347 4.1034 2.5440 25 1 -0.3634 0.5878 0.8429 26 1 -0.3634 0.4360 -0.9305 27 1 -0.3634 -1.0240 0.0876 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7025 1.6953 -2.0496 31 1 2.2969 3.1122 -1.1511 32 1 4.0528 3.3078 -4.3819 33 1 4.3399 4.6490 0.7797 34 1 4.1943 3.1734 -0.2046 35 1 5.9270 2.9053 1.5485 36 1 4.5686 1.7873 1.8170 37 1 4.9540 4.4828 3.1962 38 1 5.2453 2.8886 3.9329 39 1 2.9220 3.4600 6.8876 40 1 2.3598 2.1598 5.8101 41 1 4.0969 2.5308 5.9257 42 1 1.2793 4.0315 2.8070 43 1 2.6378 5.1503 2.5389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432893105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:20 Heat of formation + Delta-G solvation = -114.405245 kcal Electronic energy + Delta-G solvation = -22655.043864 eV Core-core repulsion = 19506.067722 eV Total energy + Delta-G solvation = -3148.976142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66180 -39.27967 -37.08006 -36.87116 -34.67319 -32.59364 -31.58608 -30.50246 -28.94585 -27.26173 -25.25007 -24.90253 -23.26136 -23.02696 -21.50813 -19.47733 -18.45840 -17.93953 -17.30803 -17.06663 -16.63472 -16.25462 -15.97898 -15.75145 -15.27623 -14.86826 -14.48969 -14.39379 -14.15400 -13.95539 -13.53942 -13.31724 -13.12869 -13.09742 -13.05961 -12.88432 -12.64446 -12.62872 -12.39971 -12.11432 -11.87090 -11.81221 -11.71582 -11.57557 -11.34210 -11.20874 -10.57237 -10.36349 -10.08674 -9.39529 -8.16955 -6.27225 1.41473 1.46585 1.55117 1.80978 2.34015 2.48324 2.86423 3.13233 3.69545 3.82646 3.92373 4.16786 4.24375 4.31243 4.36689 4.40754 4.47560 4.51630 4.56998 4.57887 4.64841 4.68566 4.75581 4.83853 4.86141 4.97950 5.00031 5.04097 5.09258 5.18610 5.20767 5.24958 5.32846 5.35936 5.46448 5.69484 5.72628 5.91874 6.10608 6.36348 6.64749 6.86683 7.35105 7.47049 8.88465 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.006998 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.414195 B = 4000.216266 C = 4911.181393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.054 0.946 7 C 0.028 3.972 8 N -0.916 5.916 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.520 3.480 14 O -0.585 6.585 15 C -0.095 4.095 16 H 0.096 0.904 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.129 4.129 20 C 0.072 3.928 21 H 0.084 0.916 22 O -0.407 6.407 23 C 0.030 3.970 24 C -0.087 4.087 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.035 0.965 41 H 0.043 0.957 42 H 0.059 0.941 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 0.067 9.989 10.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.328 5.328 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.072 0.928 7 C -0.173 4.173 8 N -0.556 5.556 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.203 1.203 13 C 0.310 3.690 14 O -0.468 6.468 15 C -0.116 4.116 16 H 0.114 0.886 17 C -0.171 4.171 18 C -0.144 4.144 19 C -0.167 4.167 20 C 0.015 3.985 21 H 0.102 0.898 22 O -0.326 6.326 23 C -0.067 4.067 24 C -0.125 4.125 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.903 0.052 10.349 10.389 hybrid contribution 0.865 -0.518 -0.732 1.246 sum -0.038 -0.466 9.617 9.629 Atomic orbital electron populations 1.22002 0.94937 1.02801 1.01211 1.21350 0.94920 0.82932 1.02070 1.48289 1.62681 1.13961 1.07895 1.19206 0.94650 0.93482 0.79953 1.21504 0.98656 1.29758 1.06680 0.92820 1.25518 1.01054 0.94778 0.95939 1.70005 1.38348 1.33260 1.13942 0.85681 0.80814 0.78232 0.78060 1.19515 1.20811 1.20331 1.20795 0.75830 0.89572 0.82825 1.90425 1.54003 1.71149 1.31233 1.21210 0.99482 0.92397 0.98508 0.88634 1.21935 0.91328 1.01615 1.02209 1.21354 1.00189 0.98458 0.94391 1.21964 0.96457 1.01749 0.96548 1.22611 0.94441 0.99303 0.82151 0.89805 1.87764 1.92286 1.37294 1.15269 1.22869 1.00065 0.93271 0.90452 1.21310 0.99797 0.99754 0.91651 0.93904 0.92833 0.89701 0.90474 0.91817 0.96607 0.94517 0.92374 0.90567 0.88141 0.91054 0.94475 0.90853 0.91869 0.87875 0.94675 0.93822 0.92228 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 10.20 71.98 0.73 -3.90 16 2 C 0.11 3.99 6.12 86.38 0.53 4.51 16 3 N -0.60 -24.51 2.47 -826.17 -2.04 -26.55 16 4 C 0.25 11.31 4.64 85.63 0.40 11.71 16 5 C -0.53 -25.76 6.75 25.60 0.17 -25.59 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 7 C 0.03 1.39 5.46 84.65 0.46 1.86 16 8 N -0.92 -48.29 13.29 21.45 0.28 -48.01 16 9 Si 0.95 40.22 29.54 68.60 2.03 42.25 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.52 20.89 5.53 87.66 0.48 21.38 16 14 O -0.58 -24.87 12.96 -3.02 -0.04 -24.91 16 15 C -0.09 -3.42 2.17 -11.54 -0.03 -3.44 16 16 H 0.10 3.41 6.93 -2.39 -0.02 3.39 16 17 C -0.13 -4.82 5.18 30.60 0.16 -4.66 16 18 C -0.11 -3.61 5.70 30.60 0.17 -3.44 16 19 C -0.13 -3.94 5.54 30.60 0.17 -3.77 16 20 C 0.07 2.38 2.32 30.59 0.07 2.45 16 21 H 0.08 3.20 4.76 -2.39 -0.01 3.18 16 22 O -0.41 -12.78 10.35 -148.98 -1.54 -14.32 16 23 C 0.03 0.73 10.82 113.37 1.23 1.96 16 24 C -0.09 -2.86 4.84 30.59 0.15 -2.71 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.08 2.78 8.03 -2.39 -0.02 2.76 16 29 H 0.06 2.33 7.54 -2.39 -0.02 2.31 16 30 H 0.02 0.77 8.11 -2.38 -0.02 0.75 16 31 H 0.04 1.73 5.58 -2.39 -0.01 1.71 16 32 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.10 4.28 3.98 -2.39 -0.01 4.27 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.04 1.42 7.22 -2.39 -0.02 1.41 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 1.78 7.87 -2.39 -0.02 1.76 16 39 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.03 0.89 8.09 -2.38 -0.02 0.87 16 41 H 0.04 0.99 7.87 -2.39 -0.02 0.98 16 42 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -55.45 330.56 4.36 -51.08 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.97 Total: 24.11 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 4.70 Total: -3.65 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -1.76 Total: -74.56 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.58 Total: -39.22 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -55.45 4.36 -51.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432893105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.322 kcal (2) G-P(sol) polarization free energy of solvation -55.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds