Wall clock time and date at job start Mon Mar 30 2020 01:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46767 * 89.99886 * 9 7 5 11 11 H 1.48493 * 109.47240 * 210.00027 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99973 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 C 1.52991 * 109.47286 * 179.97438 * 15 13 3 17 17 C 1.52998 * 109.47066 * 179.97438 * 16 15 13 18 18 H 1.09008 * 110.27683 * 307.09179 * 17 16 15 19 19 C 1.54942 * 110.31255 * 185.00130 * 17 16 15 20 20 C 1.55310 * 100.94655 * 204.63973 * 19 17 16 21 21 C 1.54377 * 102.24845 * 34.13044 * 20 19 17 22 22 H 1.09000 * 109.83225 * 98.15872 * 21 20 19 23 23 C 1.53008 * 109.83063 * 219.13067 * 21 20 19 24 24 O 1.43241 * 107.59417 * 338.64369 * 21 20 19 25 25 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 26 26 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 28 28 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 29 29 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 30 30 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 31 31 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 32 32 H 0.96995 * 119.99689 * 179.97438 * 8 7 5 33 33 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 34 34 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 35 35 H 1.08995 * 109.47398 * 299.99553 * 16 15 13 36 36 H 1.09001 * 109.47172 * 59.99982 * 16 15 13 37 37 H 1.09006 * 111.12690 * 322.55812 * 19 17 16 38 38 H 1.08999 * 111.12673 * 86.67603 * 19 17 16 39 39 H 1.08991 * 110.84784 * 152.32291 * 20 19 17 40 40 H 1.09000 * 110.84490 * 275.74143 * 20 19 17 41 41 H 1.09003 * 109.46418 * 60.00034 * 23 21 20 42 42 H 1.08999 * 109.46948 * 180.02562 * 23 21 20 43 43 H 1.08995 * 109.47153 * 300.00286 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 3.3491 3.1257 3.6181 9 14 5.9131 2.0955 3.4176 10 1 6.7852 3.1608 2.8610 11 1 5.9877 2.1193 4.9005 12 1 6.3689 0.7726 2.9203 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 6 2.3388 2.2381 -3.6351 17 6 2.0900 1.5147 -4.9601 18 1 2.6184 0.5614 -4.9751 19 6 2.5426 2.3992 -6.1491 20 6 1.6575 1.8320 -7.2923 21 6 0.3578 1.4606 -6.5467 22 1 -0.3790 2.2544 -6.6698 23 6 -0.1977 0.1449 -7.0957 24 8 0.6823 1.3098 -5.1597 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 2.0955 3.1410 1.1384 31 1 1.5817 1.6877 2.0284 32 1 3.6750 3.5155 4.4444 33 1 2.6328 0.4146 -2.5259 34 1 0.9548 1.0085 -2.5342 35 1 1.7084 3.1256 -3.5814 36 1 3.3866 2.5324 -3.5734 37 1 2.3197 3.4501 -5.9642 38 1 3.6017 2.2567 -6.3638 39 1 1.4667 2.5929 -8.0490 40 1 2.1179 0.9505 -7.7384 41 1 0.5377 -0.6471 -6.9540 42 1 -1.1151 -0.1115 -6.5658 43 1 -0.4116 0.2562 -8.1587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439141110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:04 Heat of formation + Delta-G solvation = -105.494622 kcal Electronic energy + Delta-G solvation = -21121.879144 eV Core-core repulsion = 17973.289395 eV Total energy + Delta-G solvation = -3148.589748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83533 -38.86818 -35.24377 -33.79245 -32.70792 -32.37595 -30.63619 -29.95954 -27.54108 -26.03212 -23.53095 -22.89911 -21.88687 -21.63275 -20.42229 -18.10318 -17.09108 -16.59058 -16.27642 -15.69424 -15.31454 -14.84125 -14.43812 -14.22322 -13.74957 -13.54015 -13.29416 -13.25785 -12.91019 -12.63340 -12.26098 -11.98626 -11.95957 -11.83920 -11.75193 -11.39362 -11.16303 -11.07185 -10.95830 -10.89722 -10.76969 -10.74490 -10.49080 -10.40633 -10.07674 -9.57854 -9.55633 -8.75652 -8.39041 -7.56228 -5.99705 -4.04221 3.33651 3.39249 3.41355 3.57536 3.66913 4.03000 4.34188 4.48049 4.57072 4.65268 4.95503 5.05091 5.12506 5.15000 5.33607 5.34466 5.38085 5.40966 5.46892 5.52427 5.61387 5.64750 5.71926 5.76127 5.83164 5.87604 5.94733 5.98323 6.03145 6.17039 6.32119 6.34096 6.47696 6.59667 7.04218 7.16023 7.52221 7.64662 7.97552 8.29806 8.54402 8.96308 9.21525 9.60851 11.08322 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028617 B = 0.003869 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.215336 B = 7236.153011 C = 7792.126406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.599 5.599 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.547 6.547 15 C -0.137 4.137 16 C -0.100 4.100 17 C 0.081 3.919 18 H 0.069 0.931 19 C -0.153 4.153 20 C -0.152 4.152 21 C 0.074 3.926 22 H 0.077 0.923 23 C -0.162 4.162 24 O -0.372 6.372 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.820 -7.243 -20.055 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.291 3.709 14 O -0.425 6.425 15 C -0.177 4.177 16 C -0.138 4.138 17 C 0.024 3.976 18 H 0.087 0.913 19 C -0.190 4.190 20 C -0.190 4.190 21 C 0.017 3.983 22 H 0.095 0.905 23 C -0.219 4.219 24 O -0.292 6.292 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.764 -6.585 -19.688 21.545 hybrid contribution 1.083 -0.219 0.260 1.136 sum -4.681 -6.804 -19.427 21.110 Atomic orbital electron populations 1.22213 0.96870 1.01301 1.02333 1.21389 0.93490 0.84280 1.02494 1.48262 1.63731 1.13290 1.07830 1.19237 0.96111 0.93637 0.78377 1.21459 0.97002 1.31699 1.06154 0.92533 1.24943 0.97805 0.95013 0.96426 1.69939 1.35585 1.33600 1.14355 0.86507 0.84852 0.78590 0.77510 1.20589 1.21180 1.19954 1.20420 0.78204 0.86964 0.85313 1.90648 1.46113 1.18305 1.87416 1.21673 1.03499 0.99411 0.93110 1.21472 1.03036 0.98402 0.90890 1.23062 0.81926 0.97532 0.95105 0.91300 1.23308 1.00522 1.00807 0.94389 1.23181 0.95722 1.01602 0.98460 1.22680 0.96490 0.97225 0.81939 0.90546 1.22140 1.01842 0.97398 1.00517 1.88474 1.24218 1.92365 1.24162 0.92889 0.92306 0.92199 0.91708 0.90208 0.94005 0.95158 0.92785 0.89897 0.89099 0.90531 0.89995 0.90052 0.89932 0.90301 0.90574 0.92257 0.91946 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.11 1.82 5.94 -4.04 -0.02 1.79 16 3 N -0.60 -13.16 2.46 -175.05 -0.43 -13.59 16 4 C 0.25 6.62 5.16 -5.19 -0.03 6.60 16 5 C -0.52 -15.22 9.38 -34.44 -0.32 -15.54 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.50 10.87 7.67 -10.99 -0.08 10.79 16 14 O -0.55 -14.15 15.56 5.55 0.09 -14.07 16 15 C -0.14 -2.16 4.18 -27.89 -0.12 -2.27 16 16 C -0.10 -1.45 4.23 -26.74 -0.11 -1.57 16 17 C 0.08 0.94 3.40 -25.71 -0.09 0.86 16 18 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 19 C -0.15 -1.44 6.57 -24.48 -0.16 -1.60 16 20 C -0.15 -1.21 6.54 -24.78 -0.16 -1.37 16 21 C 0.07 0.71 4.16 -26.00 -0.11 0.60 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 23 C -0.16 -1.29 9.44 37.16 0.35 -0.94 16 24 O -0.37 -4.71 10.47 -35.23 -0.37 -5.07 16 25 H 0.05 0.75 7.26 -51.92 -0.38 0.37 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.92 6.43 -51.93 -0.33 0.59 16 29 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 30 H 0.04 1.27 7.43 -51.93 -0.39 0.89 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.08 1.16 7.40 -51.92 -0.38 0.77 16 34 H 0.09 1.35 7.07 -51.93 -0.37 0.98 16 35 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -33.64 348.25 -8.02 -41.66 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.70 Total: -1.89 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.57 Total: -3.07 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.31 Total: -39.98 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.28 Total: -19.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.64 -8.02 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439141110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.833 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds