Wall clock time and date at job start Mon Mar 30 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46767 * 89.99886 * 9 7 5 11 11 H 1.48493 * 109.47240 * 210.00027 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99973 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 C 1.52991 * 109.47286 * 179.97438 * 15 13 3 17 17 C 1.52998 * 109.47066 * 179.97438 * 16 15 13 18 18 H 1.09008 * 110.27683 * 307.09179 * 17 16 15 19 19 C 1.54942 * 110.31255 * 185.00130 * 17 16 15 20 20 C 1.55310 * 100.94655 * 204.63973 * 19 17 16 21 21 C 1.54377 * 102.24845 * 34.13044 * 20 19 17 22 22 H 1.09000 * 109.83225 * 98.15872 * 21 20 19 23 23 C 1.53008 * 109.83063 * 219.13067 * 21 20 19 24 24 O 1.43241 * 107.59417 * 338.64369 * 21 20 19 25 25 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 26 26 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 28 28 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 29 29 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 30 30 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 31 31 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 32 32 H 0.96995 * 119.99689 * 179.97438 * 8 7 5 33 33 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 34 34 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 35 35 H 1.08995 * 109.47398 * 299.99553 * 16 15 13 36 36 H 1.09001 * 109.47172 * 59.99982 * 16 15 13 37 37 H 1.09006 * 111.12690 * 322.55812 * 19 17 16 38 38 H 1.08999 * 111.12673 * 86.67603 * 19 17 16 39 39 H 1.08991 * 110.84784 * 152.32291 * 20 19 17 40 40 H 1.09000 * 110.84490 * 275.74143 * 20 19 17 41 41 H 1.09003 * 109.46418 * 60.00034 * 23 21 20 42 42 H 1.08999 * 109.46948 * 180.02562 * 23 21 20 43 43 H 1.08995 * 109.47153 * 300.00286 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 3.3491 3.1257 3.6181 9 14 5.9131 2.0955 3.4176 10 1 6.7852 3.1608 2.8610 11 1 5.9877 2.1193 4.9005 12 1 6.3689 0.7726 2.9203 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 6 2.3388 2.2381 -3.6351 17 6 2.0900 1.5147 -4.9601 18 1 2.6184 0.5614 -4.9751 19 6 2.5426 2.3992 -6.1491 20 6 1.6575 1.8320 -7.2923 21 6 0.3578 1.4606 -6.5467 22 1 -0.3790 2.2544 -6.6698 23 6 -0.1977 0.1449 -7.0957 24 8 0.6823 1.3098 -5.1597 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 2.0955 3.1410 1.1384 31 1 1.5817 1.6877 2.0284 32 1 3.6750 3.5155 4.4444 33 1 2.6328 0.4146 -2.5259 34 1 0.9548 1.0085 -2.5342 35 1 1.7084 3.1256 -3.5814 36 1 3.3866 2.5324 -3.5734 37 1 2.3197 3.4501 -5.9642 38 1 3.6017 2.2567 -6.3638 39 1 1.4667 2.5929 -8.0490 40 1 2.1179 0.9505 -7.7384 41 1 0.5377 -0.6471 -6.9540 42 1 -1.1151 -0.1115 -6.5658 43 1 -0.4116 0.2562 -8.1587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439141110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:03 Heat of formation + Delta-G solvation = -126.596356 kcal Electronic energy + Delta-G solvation = -21122.794184 eV Core-core repulsion = 17973.289395 eV Total energy + Delta-G solvation = -3149.504788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92959 -40.31375 -36.98514 -35.12550 -34.64687 -33.14929 -31.79895 -31.36240 -29.26419 -27.32488 -25.10937 -24.32096 -23.27997 -22.40134 -21.32975 -19.75859 -18.63100 -17.98230 -17.85706 -17.17591 -16.66498 -16.36244 -16.09061 -15.26285 -14.81333 -14.72288 -14.53110 -14.49370 -14.17587 -14.01249 -13.54795 -13.34785 -13.20000 -13.18162 -12.95686 -12.70290 -12.63538 -12.58994 -12.40500 -12.22192 -12.06057 -11.80640 -11.70820 -11.68868 -11.65880 -11.55332 -10.65521 -10.53595 -10.39466 -9.42430 -8.22524 -6.38026 1.35967 1.39439 1.49311 1.87446 2.31756 2.47135 2.86951 3.06477 3.57384 3.69880 3.86539 3.93744 4.11149 4.15602 4.20473 4.33184 4.42667 4.44627 4.52116 4.59496 4.63659 4.73105 4.80231 4.81952 4.93849 4.96505 4.98743 5.02152 5.04894 5.11400 5.15215 5.23247 5.28302 5.34746 5.39417 5.40807 5.58438 5.87524 6.06588 6.23294 6.69880 6.82848 7.28082 7.51516 8.84707 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028617 B = 0.003869 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.215336 B = 7236.153011 C = 7792.126406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.971 3.029 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.260 1.260 13 C 0.492 3.508 14 O -0.602 6.602 15 C -0.120 4.120 16 C -0.097 4.097 17 C 0.085 3.915 18 H 0.085 0.915 19 C -0.154 4.154 20 C -0.143 4.143 21 C 0.063 3.937 22 H 0.074 0.926 23 C -0.157 4.157 24 O -0.396 6.396 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.037 0.963 28 H 0.101 0.899 29 H 0.072 0.928 30 H -0.007 1.007 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.143 -9.601 -22.011 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.336 5.336 4 C 0.140 3.860 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.184 1.184 13 C 0.282 3.718 14 O -0.484 6.484 15 C -0.159 4.159 16 C -0.135 4.135 17 C 0.028 3.972 18 H 0.103 0.897 19 C -0.191 4.191 20 C -0.180 4.180 21 C 0.006 3.994 22 H 0.092 0.908 23 C -0.214 4.214 24 O -0.317 6.317 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.011 0.989 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.117 -8.993 -21.666 24.009 hybrid contribution 0.796 0.544 0.872 1.300 sum -4.321 -8.448 -20.794 22.857 Atomic orbital electron populations 1.22142 0.94832 1.03440 1.01443 1.21730 0.95149 0.81383 1.03884 1.48328 1.63779 1.15192 1.06331 1.18684 0.95364 0.91369 0.80612 1.21728 0.97820 1.32027 1.06579 0.92734 1.25919 1.02635 0.94444 0.96384 1.70066 1.37840 1.34274 1.14822 0.85372 0.78737 0.78911 0.77526 1.20590 1.19924 1.18410 1.21525 0.76788 0.86580 0.86888 1.90613 1.48534 1.20922 1.88318 1.21648 1.04966 0.99729 0.89565 1.21421 1.01915 0.97734 0.92430 1.23006 0.82114 0.98205 0.93893 0.89676 1.23319 1.01757 0.99903 0.94169 1.23170 0.94336 1.02535 0.97982 1.22908 0.97412 0.98179 0.80894 0.90760 1.22108 1.01358 0.96422 1.01529 1.88437 1.24571 1.92454 1.26220 0.92469 0.88565 0.94421 0.88074 0.90993 0.98897 0.96258 0.92405 0.87019 0.87512 0.92967 0.90943 0.91111 0.88448 0.88802 0.89098 0.92156 0.92698 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 10.24 71.98 0.74 -3.62 16 2 C 0.10 3.26 5.94 86.38 0.51 3.77 16 3 N -0.61 -27.07 2.46 -826.14 -2.03 -29.10 16 4 C 0.26 14.78 5.16 85.63 0.44 15.22 16 5 C -0.54 -32.32 9.38 25.60 0.24 -32.08 16 6 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 9 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 13 C 0.49 21.66 7.67 87.66 0.67 22.33 16 14 O -0.60 -32.76 15.56 -3.04 -0.05 -32.81 16 15 C -0.12 -3.61 4.18 29.85 0.12 -3.49 16 16 C -0.10 -2.78 4.23 30.59 0.13 -2.65 16 17 C 0.08 1.82 3.40 31.26 0.11 1.92 16 18 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 19 C -0.15 -2.62 6.57 32.05 0.21 -2.41 16 20 C -0.14 -1.87 6.54 31.86 0.21 -1.66 16 21 C 0.06 1.08 4.16 31.06 0.13 1.21 16 22 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 23 C -0.16 -2.11 9.44 71.98 0.68 -1.43 16 24 O -0.40 -9.32 10.47 -148.98 -1.56 -10.88 16 25 H 0.06 1.51 7.26 -2.38 -0.02 1.49 16 26 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.10 2.55 6.43 -2.39 -0.02 2.53 16 29 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 30 H -0.01 -0.46 7.43 -2.39 -0.02 -0.48 16 31 H 0.02 1.11 8.07 -2.38 -0.02 1.09 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.11 2.76 7.40 -2.38 -0.02 2.75 16 34 H 0.11 2.94 7.07 -2.39 -0.02 2.92 16 35 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 36 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 37 H 0.07 1.34 8.06 -2.38 -0.02 1.33 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.95 7.86 -2.39 -0.02 0.93 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -76.66 348.25 4.28 -72.38 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.95 Total: 12.31 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.65 Total: -2.14 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -1.74 Total: -86.64 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.61 Total: -43.69 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -76.66 4.28 -72.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439141110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.217 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds