Wall clock time and date at job start Mon Mar 30 2020 01:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47018 * 2 1 4 4 C 1.46498 * 120.00398 * 270.00140 * 3 2 1 5 5 C 1.50702 * 109.46739 * 270.00261 * 4 3 2 6 6 H 1.08000 * 120.00229 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99658 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00411 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99920 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46849 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47070 * 120.00445 * 9 7 5 12 12 H 1.48504 * 109.47045 * 240.00236 * 9 7 5 13 13 C 1.34781 * 119.99922 * 89.99942 * 3 2 1 14 14 O 1.21284 * 120.00074 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00045 * 0.02562 * 13 3 2 16 16 C 1.52996 * 109.47185 * 179.97438 * 15 13 3 17 17 C 1.52994 * 109.47056 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.89782 * 54.48229 * 17 16 15 19 19 C 1.54390 * 109.83034 * 175.41436 * 17 16 15 20 20 C 1.55307 * 102.25162 * 140.86954 * 19 17 16 21 21 C 1.54947 * 100.94272 * 325.86753 * 20 19 17 22 22 H 1.09006 * 110.39223 * 277.48540 * 21 20 19 23 23 C 1.52997 * 110.30874 * 155.36267 * 21 20 19 24 24 O 1.43244 * 109.83180 * 293.54590 * 17 16 15 25 25 H 1.09001 * 109.47100 * 59.99857 * 1 2 3 26 26 H 1.08995 * 109.47395 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47301 * 300.00190 * 1 2 3 28 28 H 1.08997 * 109.46478 * 239.99984 * 2 1 3 29 29 H 1.09001 * 109.47100 * 120.00143 * 2 1 3 30 30 H 1.08999 * 109.47085 * 29.99698 * 4 3 2 31 31 H 1.08990 * 109.47522 * 150.00236 * 4 3 2 32 32 H 0.96997 * 120.00208 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46802 * 59.99517 * 15 13 3 34 34 H 1.08998 * 109.46556 * 299.99838 * 15 13 3 35 35 H 1.08998 * 109.47174 * 59.99710 * 16 15 13 36 36 H 1.09003 * 109.47331 * 300.00299 * 16 15 13 37 37 H 1.09003 * 110.84436 * 259.05888 * 19 17 16 38 38 H 1.09002 * 110.84678 * 22.47293 * 19 17 16 39 39 H 1.09000 * 111.11809 * 207.94650 * 20 19 17 40 40 H 1.09002 * 111.12451 * 83.78622 * 20 19 17 41 41 H 1.09002 * 109.47153 * 302.83012 * 23 21 20 42 42 H 1.09001 * 109.46832 * 182.83203 * 23 21 20 43 43 H 1.09004 * 109.47261 * 62.83184 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2301 -1.0961 7 6 4.1491 2.3897 -2.8779 8 7 3.3492 3.1259 -3.6180 9 14 5.9136 2.0967 -3.4168 10 1 6.6011 1.2415 -2.4163 11 1 5.9215 1.4173 -4.7372 12 1 6.6205 3.3982 -3.5255 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9923 1.3059 2.4724 16 6 2.3242 2.2431 3.6353 17 6 2.0691 1.5218 4.9602 18 1 2.6216 0.5825 4.9837 19 6 2.5097 2.4181 6.1377 20 6 1.3960 2.1540 7.1875 21 6 0.1653 1.9556 6.2672 22 1 -0.2531 2.9202 5.9793 23 6 -0.8945 1.1075 6.9732 24 8 0.6680 1.2654 5.1121 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5817 1.6878 -2.0283 31 1 2.0956 3.1410 -1.1383 32 1 3.6750 3.5158 -4.4442 33 1 2.6228 0.4186 2.5298 34 1 0.9445 1.0114 2.5302 35 1 1.6940 3.1306 3.5779 36 1 3.3721 2.5373 3.5772 37 1 3.4829 2.1079 6.5182 38 1 2.5271 3.4669 5.8415 39 1 1.2620 3.0146 7.8428 40 1 1.6050 1.2526 7.7637 41 1 -0.4596 0.1516 7.2651 42 1 -1.7313 0.9345 6.2964 43 1 -1.2476 1.6322 7.8610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439141111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:05 Heat of formation + Delta-G solvation = -126.754981 kcal Electronic energy + Delta-G solvation = -21150.602387 eV Core-core repulsion = 18001.090721 eV Total energy + Delta-G solvation = -3149.511667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95226 -40.30211 -36.98798 -35.11061 -34.62787 -33.14710 -31.83381 -31.38967 -29.26640 -27.30413 -25.11201 -24.32937 -23.30337 -22.41349 -21.30470 -19.75527 -18.63837 -17.99305 -17.84969 -17.21047 -16.71494 -16.33845 -16.07778 -15.24741 -14.85671 -14.74053 -14.61348 -14.46493 -14.20373 -13.81109 -13.54690 -13.31310 -13.28952 -13.14081 -13.02583 -12.72947 -12.64759 -12.57223 -12.41506 -12.22655 -12.05902 -11.83947 -11.69751 -11.67213 -11.65680 -11.56969 -10.66140 -10.55331 -10.38901 -9.42932 -8.23147 -6.38575 1.35394 1.37902 1.50133 1.86857 2.31362 2.46654 2.88077 3.05809 3.59925 3.66198 3.87074 3.93542 4.09974 4.16569 4.21799 4.29460 4.40358 4.44128 4.53053 4.62354 4.63324 4.73552 4.80352 4.83818 4.93527 4.95338 4.98052 5.01568 5.04371 5.10110 5.16927 5.22623 5.27265 5.34972 5.38884 5.39037 5.58077 5.87091 6.06114 6.21782 6.69539 6.82322 7.27584 7.50962 8.84245 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.003898 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.211177 B = 7181.807038 C = 7742.407924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.971 3.029 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.492 3.508 14 O -0.602 6.602 15 C -0.118 4.118 16 C -0.107 4.107 17 C 0.085 3.915 18 H 0.095 0.905 19 C -0.153 4.153 20 C -0.142 4.142 21 C 0.061 3.939 22 H 0.059 0.941 23 C -0.146 4.146 24 O -0.393 6.393 25 H 0.037 0.963 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.019 0.981 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.947 -8.553 21.926 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.021 4.021 3 N -0.336 5.336 4 C 0.139 3.861 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.193 1.193 12 H -0.207 1.207 13 C 0.282 3.718 14 O -0.485 6.485 15 C -0.158 4.158 16 C -0.146 4.146 17 C 0.028 3.972 18 H 0.112 0.888 19 C -0.191 4.191 20 C -0.180 4.180 21 C 0.004 3.996 22 H 0.077 0.923 23 C -0.203 4.203 24 O -0.313 6.313 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.037 0.963 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.891 -8.019 21.606 23.787 hybrid contribution 0.846 0.647 -0.994 1.457 sum -5.044 -7.372 20.612 22.464 Atomic orbital electron populations 1.22142 0.94811 1.03454 1.01430 1.21728 0.95163 0.81382 1.03877 1.48329 1.63836 1.15131 1.06334 1.18687 0.95380 0.91369 0.80618 1.21750 0.97815 1.31956 1.06560 0.92794 1.25920 1.02655 0.94429 0.96392 1.70069 1.37820 1.34290 1.14804 0.85315 0.78701 0.78037 0.78418 1.18982 1.19324 1.20703 1.21553 0.76788 0.86563 0.86918 1.90609 1.48561 1.20953 1.88330 1.21627 1.04929 0.99711 0.89531 1.21679 1.01711 0.97767 0.93419 1.22777 0.82373 0.98636 0.93462 0.88766 1.23192 1.00794 1.00337 0.94738 1.23296 0.93137 1.03900 0.97626 1.23157 0.95536 0.95478 0.85406 0.92259 1.21863 0.97754 1.00333 1.00318 1.88421 1.23253 1.71715 1.47929 0.94416 0.88554 0.92471 0.90974 0.88116 0.96252 0.98888 0.92400 0.87134 0.87503 0.93249 0.91377 0.88375 0.91089 0.88619 0.89147 0.91697 0.92668 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 10.24 71.98 0.74 -3.64 16 2 C 0.10 3.28 5.93 86.38 0.51 3.80 16 3 N -0.61 -27.21 2.46 -826.16 -2.03 -29.24 16 4 C 0.26 14.80 5.16 85.63 0.44 15.24 16 5 C -0.54 -32.38 9.39 25.60 0.24 -32.14 16 6 H 0.05 3.18 7.81 -2.91 -0.02 3.15 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 9 Si 0.97 45.89 29.54 68.60 2.03 47.91 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 C 0.49 21.78 7.67 87.66 0.67 22.45 16 14 O -0.60 -32.94 15.56 -3.04 -0.05 -32.99 16 15 C -0.12 -3.62 4.16 29.85 0.12 -3.49 16 16 C -0.11 -3.10 4.07 30.59 0.12 -2.98 16 17 C 0.08 1.82 3.52 31.06 0.11 1.93 16 18 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 19 C -0.15 -2.58 6.55 31.86 0.21 -2.37 16 20 C -0.14 -1.92 6.57 32.05 0.21 -1.71 16 21 C 0.06 1.10 4.07 31.26 0.13 1.22 16 22 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 23 C -0.15 -2.01 9.62 71.98 0.69 -1.31 16 24 O -0.39 -9.19 10.32 -148.98 -1.54 -10.72 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 1.51 7.22 -2.39 -0.02 1.50 16 28 H 0.07 2.46 8.07 -2.39 -0.02 2.45 16 29 H 0.10 2.57 6.44 -2.39 -0.02 2.56 16 30 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 31 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 32 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.11 2.79 7.40 -2.39 -0.02 2.78 16 34 H 0.11 2.97 6.93 -2.39 -0.02 2.96 16 35 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.33 7.85 -2.39 -0.02 1.31 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.02 8.06 -2.39 -0.02 1.00 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 0.83 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -76.85 347.95 4.31 -72.54 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.95 Total: 12.31 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 4.66 Total: -2.27 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -1.74 Total: -86.78 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -1.58 Total: -43.71 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.85 4.31 -72.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439141111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.218 kcal (2) G-P(sol) polarization free energy of solvation -76.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds