Wall clock time and date at job start Mon Mar 30 2020 01:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47561 * 2 1 4 4 C 1.46497 * 119.99567 * 90.00274 * 3 2 1 5 5 C 1.50700 * 109.47128 * 269.99933 * 4 3 2 6 6 H 1.07999 * 119.99988 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 C 1.34771 * 120.00412 * 270.00155 * 3 2 1 14 14 O 1.21277 * 120.00598 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99635 * 359.97438 * 13 3 2 16 16 C 1.53002 * 109.46826 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.47067 * 180.02562 * 16 15 13 18 18 H 1.09001 * 110.33348 * 307.25529 * 17 16 15 19 19 C 1.54480 * 110.37276 * 184.99948 * 17 16 15 20 20 C 1.54508 * 104.06243 * 217.19257 * 19 17 16 21 21 C 1.54474 * 104.06561 * 0.02562 * 20 19 17 22 22 H 1.08997 * 110.37532 * 265.03798 * 21 20 19 23 23 C 1.52997 * 110.37531 * 142.80983 * 21 20 19 24 24 O 1.44425 * 104.80242 * 23.98035 * 21 20 19 25 25 H 1.09000 * 109.46188 * 300.00165 * 1 2 3 26 26 H 1.08999 * 109.46655 * 59.99164 * 1 2 3 27 27 H 1.08998 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46811 * 240.00201 * 2 1 3 29 29 H 1.08997 * 109.47375 * 120.00648 * 2 1 3 30 30 H 1.09004 * 109.47268 * 150.00073 * 4 3 2 31 31 H 1.08997 * 109.47471 * 30.00480 * 4 3 2 32 32 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47311 * 300.00050 * 15 13 3 34 34 H 1.08997 * 109.47160 * 60.00434 * 15 13 3 35 35 H 1.08995 * 109.47516 * 300.00291 * 16 15 13 36 36 H 1.09001 * 109.47033 * 60.00294 * 16 15 13 37 37 H 1.09002 * 110.51225 * 335.84144 * 19 17 16 38 38 H 1.09001 * 110.50871 * 98.41194 * 19 17 16 39 39 H 1.08995 * 110.50956 * 118.64871 * 20 19 17 40 40 H 1.09004 * 110.50726 * 241.35788 * 20 19 17 41 41 H 1.09002 * 109.46734 * 60.00034 * 23 21 20 42 42 H 1.08994 * 109.47359 * 180.02562 * 23 21 20 43 43 H 1.09001 * 109.47094 * 300.00551 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0716 1.2688 5 6 1.0069 2.7821 1.7039 6 1 0.1159 2.7247 1.0963 7 6 0.9955 3.5055 2.8777 8 7 2.0790 3.5709 3.6203 9 14 -0.5612 4.3855 3.4174 10 1 -1.3771 3.4756 4.2609 11 1 -0.2003 5.5950 4.1997 12 1 -1.3440 4.7856 2.2204 13 6 2.2431 2.0166 -1.1671 14 8 2.6470 3.1601 -1.1671 15 6 1.9924 1.3060 -2.4723 16 6 2.3231 2.2437 -3.6352 17 6 2.0680 1.5225 -4.9602 18 1 2.5936 0.5678 -4.9792 19 6 2.5132 2.4052 -6.1473 20 6 1.4530 2.1311 -7.2373 21 6 0.4923 1.1158 -6.5797 22 1 0.7733 0.0978 -6.8493 23 6 -0.9511 1.3981 -7.0012 24 8 0.6511 1.3241 -5.1593 25 1 -0.3632 0.5139 0.8900 26 1 -0.3632 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.0647 2.7983 1.1385 31 1 2.5508 1.3450 2.0283 32 1 2.0711 4.0801 4.4458 33 1 2.6228 0.4187 -2.5299 34 1 0.9445 1.0116 -2.5302 35 1 1.6924 3.1307 -3.5774 36 1 3.3709 2.5385 -3.5774 37 1 2.5066 3.4578 -5.8641 38 1 3.5040 2.1097 -6.4924 39 1 0.9223 3.0482 -7.4930 40 1 1.9187 1.6985 -8.1228 41 1 -1.0356 1.3166 -8.0849 42 1 -1.6156 0.6745 -6.5291 43 1 -1.2304 2.4046 -6.6897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439141112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:07 Heat of formation + Delta-G solvation = -104.377537 kcal Electronic energy + Delta-G solvation = -21216.975534 eV Core-core repulsion = 18068.434227 eV Total energy + Delta-G solvation = -3148.541308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.77802 -38.86664 -35.25394 -33.78695 -32.65253 -32.31905 -30.67348 -29.85613 -27.58280 -26.03914 -23.51166 -22.66396 -22.08127 -21.23975 -20.78885 -18.12911 -16.69706 -16.47712 -16.28786 -16.01759 -15.18341 -14.87614 -14.67987 -14.20335 -13.91520 -13.31706 -13.18667 -13.09543 -12.84533 -12.51466 -12.31695 -12.09915 -11.93957 -11.70091 -11.63012 -11.30699 -11.16061 -11.10225 -10.94130 -10.79611 -10.72169 -10.71518 -10.51574 -10.36665 -9.99088 -9.77794 -9.51034 -8.76503 -8.37501 -7.57130 -5.98560 -4.02088 3.33500 3.39997 3.44369 3.56296 3.73441 4.03704 4.47119 4.49220 4.54309 4.76502 4.84535 5.05162 5.13427 5.21119 5.31007 5.35259 5.37461 5.44286 5.49516 5.54888 5.66377 5.68350 5.74154 5.85693 5.86903 5.92964 5.94876 5.96963 5.98711 6.24158 6.30445 6.43036 6.47111 6.85957 6.88377 7.14976 7.51392 7.65604 7.98846 8.31301 8.53431 8.98071 9.21045 9.62590 11.09653 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.004011 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.239025 B = 6979.421303 C = 7073.499493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 N -0.600 5.600 4 C 0.245 3.755 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.546 6.546 15 C -0.138 4.138 16 C -0.096 4.096 17 C 0.076 3.924 18 H 0.067 0.933 19 C -0.152 4.152 20 C -0.151 4.151 21 C 0.068 3.932 22 H 0.065 0.935 23 C -0.147 4.147 24 O -0.364 6.364 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -8.822 -19.964 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 N -0.332 5.332 4 C 0.126 3.874 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.424 6.424 15 C -0.178 4.178 16 C -0.134 4.134 17 C 0.018 3.982 18 H 0.085 0.915 19 C -0.190 4.190 20 C -0.189 4.189 21 C 0.010 3.990 22 H 0.083 0.917 23 C -0.204 4.204 24 O -0.284 6.284 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.250 -8.136 -19.595 21.254 hybrid contribution -0.761 0.390 0.295 0.905 sum -2.011 -7.746 -19.300 20.894 Atomic orbital electron populations 1.22224 0.96414 1.00798 1.03381 1.21364 0.94548 0.83783 1.01481 1.48273 1.63851 1.13225 1.07851 1.19263 0.97454 0.92432 0.78258 1.21473 0.97549 1.30806 1.06075 0.92329 1.24940 0.96411 0.96360 0.96501 1.69938 1.27540 1.41850 1.14282 0.86532 0.83285 0.79257 0.78583 1.20695 1.21147 1.19908 1.20388 0.78352 0.86828 0.85282 1.90649 1.46575 1.17801 1.87398 1.21690 1.03691 0.99244 0.93166 1.21398 1.02971 0.98536 0.90474 1.23074 0.82204 0.97549 0.95377 0.91476 1.22986 0.99039 1.01735 0.95212 1.22996 0.97146 1.00189 0.98561 1.22933 0.96100 0.97826 0.82113 0.91688 1.21799 0.94769 1.02973 1.00867 1.89208 1.23809 1.92733 1.22646 0.90711 0.93107 0.92936 0.92003 0.90928 0.94011 0.95212 0.92836 0.90027 0.88951 0.90287 0.90004 0.90270 0.90652 0.90649 0.90878 0.91441 0.91888 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.16 0.38 -2.37 16 2 C 0.11 1.89 5.98 -4.04 -0.02 1.86 16 3 N -0.60 -13.09 2.46 -175.06 -0.43 -13.52 16 4 C 0.25 6.56 5.20 -5.20 -0.03 6.53 16 5 C -0.52 -14.99 8.92 -34.44 -0.31 -15.29 16 6 H 0.06 1.69 7.42 -52.49 -0.39 1.30 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.50 10.84 7.67 -10.98 -0.08 10.75 16 14 O -0.55 -14.09 15.56 5.56 0.09 -14.01 16 15 C -0.14 -2.17 4.19 -27.88 -0.12 -2.28 16 16 C -0.10 -1.40 4.13 -26.73 -0.11 -1.51 16 17 C 0.08 0.89 3.25 -25.95 -0.08 0.80 16 18 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 19 C -0.15 -1.48 6.63 -25.16 -0.17 -1.65 16 20 C -0.15 -1.30 6.63 -25.17 -0.17 -1.46 16 21 C 0.07 0.67 3.92 -25.96 -0.10 0.56 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 C -0.15 -1.26 9.52 37.16 0.35 -0.90 16 24 O -0.36 -4.78 10.82 -35.23 -0.38 -5.16 16 25 H 0.07 1.43 7.26 -51.93 -0.38 1.05 16 26 H 0.05 0.82 7.22 -51.93 -0.38 0.45 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 29 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 31 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.08 1.07 7.40 -51.93 -0.38 0.69 16 34 H 0.09 1.44 7.05 -51.93 -0.37 1.07 16 35 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 36 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -33.58 346.11 -7.95 -41.54 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.61 Total: -1.66 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.55 Total: -3.33 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.31 Total: -39.88 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.29 Total: -19.17 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.58 -7.95 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439141112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.840 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds