Wall clock time and date at job start Mon Mar 30 2020 01:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47561 * 2 1 4 4 C 1.46497 * 119.99567 * 90.00274 * 3 2 1 5 5 C 1.50700 * 109.47128 * 269.99933 * 4 3 2 6 6 H 1.07999 * 119.99988 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 C 1.34771 * 120.00412 * 270.00155 * 3 2 1 14 14 O 1.21277 * 120.00598 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99635 * 359.97438 * 13 3 2 16 16 C 1.53002 * 109.46826 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.47067 * 180.02562 * 16 15 13 18 18 H 1.09001 * 110.33348 * 307.25529 * 17 16 15 19 19 C 1.54480 * 110.37276 * 184.99948 * 17 16 15 20 20 C 1.54508 * 104.06243 * 217.19257 * 19 17 16 21 21 C 1.54474 * 104.06561 * 0.02562 * 20 19 17 22 22 H 1.08997 * 110.37532 * 265.03798 * 21 20 19 23 23 C 1.52997 * 110.37531 * 142.80983 * 21 20 19 24 24 O 1.44425 * 104.80242 * 23.98035 * 21 20 19 25 25 H 1.09000 * 109.46188 * 300.00165 * 1 2 3 26 26 H 1.08999 * 109.46655 * 59.99164 * 1 2 3 27 27 H 1.08998 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46811 * 240.00201 * 2 1 3 29 29 H 1.08997 * 109.47375 * 120.00648 * 2 1 3 30 30 H 1.09004 * 109.47268 * 150.00073 * 4 3 2 31 31 H 1.08997 * 109.47471 * 30.00480 * 4 3 2 32 32 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47311 * 300.00050 * 15 13 3 34 34 H 1.08997 * 109.47160 * 60.00434 * 15 13 3 35 35 H 1.08995 * 109.47516 * 300.00291 * 16 15 13 36 36 H 1.09001 * 109.47033 * 60.00294 * 16 15 13 37 37 H 1.09002 * 110.51225 * 335.84144 * 19 17 16 38 38 H 1.09001 * 110.50871 * 98.41194 * 19 17 16 39 39 H 1.08995 * 110.50956 * 118.64871 * 20 19 17 40 40 H 1.09004 * 110.50726 * 241.35788 * 20 19 17 41 41 H 1.09002 * 109.46734 * 60.00034 * 23 21 20 42 42 H 1.08994 * 109.47359 * 180.02562 * 23 21 20 43 43 H 1.09001 * 109.47094 * 300.00551 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0716 1.2688 5 6 1.0069 2.7821 1.7039 6 1 0.1159 2.7247 1.0963 7 6 0.9955 3.5055 2.8777 8 7 2.0790 3.5709 3.6203 9 14 -0.5612 4.3855 3.4174 10 1 -1.3771 3.4756 4.2609 11 1 -0.2003 5.5950 4.1997 12 1 -1.3440 4.7856 2.2204 13 6 2.2431 2.0166 -1.1671 14 8 2.6470 3.1601 -1.1671 15 6 1.9924 1.3060 -2.4723 16 6 2.3231 2.2437 -3.6352 17 6 2.0680 1.5225 -4.9602 18 1 2.5936 0.5678 -4.9792 19 6 2.5132 2.4052 -6.1473 20 6 1.4530 2.1311 -7.2373 21 6 0.4923 1.1158 -6.5797 22 1 0.7733 0.0978 -6.8493 23 6 -0.9511 1.3981 -7.0012 24 8 0.6511 1.3241 -5.1593 25 1 -0.3632 0.5139 0.8900 26 1 -0.3632 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.0647 2.7983 1.1385 31 1 2.5508 1.3450 2.0283 32 1 2.0711 4.0801 4.4458 33 1 2.6228 0.4187 -2.5299 34 1 0.9445 1.0116 -2.5302 35 1 1.6924 3.1307 -3.5774 36 1 3.3709 2.5385 -3.5774 37 1 2.5066 3.4578 -5.8641 38 1 3.5040 2.1097 -6.4924 39 1 0.9223 3.0482 -7.4930 40 1 1.9187 1.6985 -8.1228 41 1 -1.0356 1.3166 -8.0849 42 1 -1.6156 0.6745 -6.5291 43 1 -1.2304 2.4046 -6.6897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439141112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:07 Heat of formation + Delta-G solvation = -125.681216 kcal Electronic energy + Delta-G solvation = -21217.899331 eV Core-core repulsion = 18068.434227 eV Total energy + Delta-G solvation = -3149.465105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91374 -40.27407 -36.99749 -35.09392 -34.62510 -33.11746 -31.78868 -31.33872 -29.34745 -27.34456 -25.02235 -24.21369 -23.35250 -22.15601 -21.66931 -19.75471 -18.70318 -17.89575 -17.47527 -17.02742 -16.95035 -16.24404 -16.00292 -15.80343 -14.71477 -14.68975 -14.61408 -14.39217 -14.05130 -13.96905 -13.61425 -13.36072 -13.28494 -13.05839 -12.95516 -12.78021 -12.59131 -12.53562 -12.40962 -12.25009 -11.99497 -11.76522 -11.73388 -11.64501 -11.56668 -11.46021 -10.62930 -10.61514 -10.53341 -9.42642 -8.21804 -6.35054 1.34156 1.37150 1.47495 1.86748 2.33154 2.47250 2.93339 3.07348 3.59312 3.73844 3.86841 4.00079 4.06619 4.13880 4.19548 4.34947 4.43090 4.49286 4.53942 4.59974 4.63910 4.69648 4.71454 4.84534 4.96260 4.98342 4.99615 5.03260 5.06943 5.15032 5.20128 5.23210 5.24528 5.29263 5.34475 5.51410 5.61286 5.88691 6.07571 6.08847 6.71819 6.83520 7.29821 7.52250 8.85460 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.004011 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.239025 B = 6979.421303 C = 7073.499493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.606 5.606 4 C 0.260 3.740 5 C -0.535 4.535 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.276 1.276 13 C 0.493 3.507 14 O -0.602 6.602 15 C -0.121 4.121 16 C -0.093 4.093 17 C 0.079 3.921 18 H 0.091 0.909 19 C -0.153 4.153 20 C -0.147 4.147 21 C 0.060 3.940 22 H 0.082 0.918 23 C -0.146 4.146 24 O -0.394 6.394 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.076 0.924 30 H -0.005 1.005 31 H 0.022 0.978 32 H 0.266 0.734 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 -10.830 -21.909 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.337 5.337 4 C 0.138 3.862 5 C -0.573 4.573 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.789 3.211 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.201 1.201 13 C 0.283 3.717 14 O -0.484 6.484 15 C -0.160 4.160 16 C -0.131 4.131 17 C 0.022 3.978 18 H 0.109 0.891 19 C -0.191 4.191 20 C -0.184 4.184 21 C 0.003 3.997 22 H 0.100 0.900 23 C -0.203 4.203 24 O -0.314 6.314 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.014 0.986 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.234 -10.195 -21.557 23.951 hybrid contribution -0.435 0.992 0.887 1.400 sum -2.669 -9.204 -20.670 22.783 Atomic orbital electron populations 1.22149 0.95785 1.02780 1.01419 1.21735 0.95037 0.81063 1.03885 1.48331 1.63874 1.15111 1.06337 1.18736 0.95371 0.91544 0.80536 1.21702 0.97880 1.31419 1.06325 0.92974 1.25839 0.99812 0.97028 0.96539 1.70053 1.29599 1.42560 1.14748 0.85469 0.79223 0.78307 0.78151 1.18747 1.20522 1.20058 1.21502 0.76886 0.86467 0.86892 1.90615 1.48954 1.20496 1.88313 1.21663 1.04864 0.99921 0.89555 1.21343 1.02047 0.97586 0.92120 1.23055 0.82249 0.98478 0.93997 0.89133 1.23005 1.00584 1.00546 0.94974 1.23000 0.96531 1.00008 0.98875 1.23189 0.96903 0.99029 0.80582 0.90015 1.21827 0.94202 1.01947 1.02371 1.89175 1.24402 1.92987 1.24873 0.94344 0.93333 0.88923 0.87552 0.90525 0.98643 0.96000 0.92480 0.86187 0.88112 0.93536 0.90362 0.91820 0.88568 0.90951 0.88413 0.89072 0.92244 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 10.24 71.98 0.74 -4.26 16 2 C 0.10 3.33 5.98 86.38 0.52 3.84 16 3 N -0.61 -26.73 2.46 -826.16 -2.03 -28.76 16 4 C 0.26 14.51 5.20 85.63 0.45 14.96 16 5 C -0.53 -31.80 8.92 25.60 0.23 -31.57 16 6 H 0.05 3.10 7.42 -2.91 -0.02 3.07 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 9 Si 0.96 46.39 29.54 68.60 2.03 48.41 16 10 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 C 0.49 21.50 7.67 87.66 0.67 22.17 16 14 O -0.60 -32.62 15.56 -3.02 -0.05 -32.67 16 15 C -0.12 -3.60 4.19 29.85 0.13 -3.47 16 16 C -0.09 -2.67 4.13 30.60 0.13 -2.55 16 17 C 0.08 1.70 3.25 31.10 0.10 1.80 16 18 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 19 C -0.15 -2.70 6.63 31.61 0.21 -2.49 16 20 C -0.15 -2.13 6.63 31.61 0.21 -1.92 16 21 C 0.06 1.02 3.92 31.09 0.12 1.14 16 22 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 23 C -0.15 -2.22 9.52 71.98 0.68 -1.54 16 24 O -0.39 -9.62 10.82 -148.98 -1.61 -11.23 16 25 H 0.04 1.45 7.26 -2.39 -0.02 1.43 16 26 H 0.05 1.49 7.22 -2.39 -0.02 1.47 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.11 2.45 6.44 -2.39 -0.02 2.44 16 29 H 0.08 2.37 7.89 -2.39 -0.02 2.36 16 30 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 31 H 0.02 1.24 7.89 -2.39 -0.02 1.22 16 32 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.12 2.68 7.40 -2.39 -0.02 2.66 16 34 H 0.10 2.91 7.05 -2.39 -0.02 2.89 16 35 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 36 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 37 H 0.06 1.30 7.87 -2.39 -0.02 1.28 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.09 7.87 -2.39 -0.02 1.07 16 40 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -77.18 346.11 4.22 -72.96 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.96 Total: 11.65 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.64 Total: -3.04 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -1.74 Total: -86.08 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.66 Total: -43.90 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.18 4.22 -72.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439141112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.721 kcal (2) G-P(sol) polarization free energy of solvation -77.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds