Wall clock time and date at job start Mon Mar 30 2020 01:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47187 * 2 1 4 4 C 1.46499 * 119.99860 * 270.00644 * 3 2 1 5 5 C 1.50710 * 109.46826 * 269.99468 * 4 3 2 6 6 H 1.07995 * 119.99847 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99694 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00227 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99565 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47299 * 60.00070 * 9 7 5 11 11 H 1.48499 * 109.46909 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47242 * 299.99786 * 9 7 5 13 13 C 1.34776 * 120.00134 * 89.99894 * 3 2 1 14 14 O 1.21279 * 120.00402 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99675 * 0.02562 * 13 3 2 16 16 C 1.53001 * 109.46870 * 179.97438 * 15 13 3 17 17 C 1.52998 * 109.47152 * 179.97438 * 16 15 13 18 18 H 1.09004 * 110.32912 * 52.74958 * 17 16 15 19 19 C 1.54472 * 110.37541 * 175.00108 * 17 16 15 20 20 C 1.54505 * 104.06681 * 142.92132 * 19 17 16 21 21 C 1.54487 * 104.06179 * 0.02562 * 20 19 17 22 22 H 1.08997 * 110.37332 * 94.85398 * 21 20 19 23 23 C 1.52999 * 110.37340 * 217.18979 * 21 20 19 24 24 O 1.44421 * 104.79872 * 336.02098 * 21 20 19 25 25 H 1.09000 * 109.47026 * 299.99823 * 1 2 3 26 26 H 1.08995 * 109.47698 * 59.99529 * 1 2 3 27 27 H 1.09008 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46598 * 239.99981 * 2 1 3 29 29 H 1.09003 * 109.47394 * 120.00384 * 2 1 3 30 30 H 1.08998 * 109.47796 * 29.99629 * 4 3 2 31 31 H 1.09005 * 109.47433 * 150.00215 * 4 3 2 32 32 H 0.97000 * 119.99443 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47359 * 59.99778 * 15 13 3 34 34 H 1.08995 * 109.46953 * 299.99761 * 15 13 3 35 35 H 1.09000 * 109.46911 * 59.99994 * 16 15 13 36 36 H 1.08999 * 109.47230 * 300.00285 * 16 15 13 37 37 H 1.09003 * 110.51251 * 24.27609 * 19 17 16 38 38 H 1.09005 * 110.63087 * 261.62566 * 19 17 16 39 39 H 1.09003 * 110.51737 * 241.36166 * 20 19 17 40 40 H 1.09000 * 110.51297 * 118.64595 * 20 19 17 41 41 H 1.09010 * 109.46831 * 59.99653 * 23 21 20 42 42 H 1.08996 * 109.46987 * 179.97438 * 23 21 20 43 43 H 1.08996 * 109.46862 * 300.00235 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2623 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3905 -2.8775 8 7 3.3494 3.1274 -3.6171 9 14 5.9133 2.0965 -3.4172 10 1 6.1401 0.6398 -3.5956 11 1 6.1607 2.7966 -4.7032 12 1 6.8412 2.6188 -2.3821 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3242 2.2431 3.6352 17 6 2.0691 1.5219 4.9602 18 1 2.5941 0.5669 4.9787 19 6 2.5153 2.4040 6.1472 20 6 1.4571 2.1283 7.2387 21 6 0.4969 1.1116 6.5821 22 1 0.7810 0.0939 6.8497 23 6 -0.9464 1.3917 7.0058 24 8 0.6535 1.3204 5.1617 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5816 1.6878 -2.0284 31 1 2.0954 3.1411 -1.1384 32 1 3.6757 3.5185 -4.4427 33 1 2.6228 0.4186 2.5298 34 1 0.9445 1.0114 2.5302 35 1 1.6939 3.1306 3.5778 36 1 3.3721 2.5373 3.5771 37 1 2.5074 3.4568 5.8649 38 1 3.5063 2.1098 6.4931 39 1 0.9258 3.0446 7.4959 40 1 1.9244 1.6955 8.1232 41 1 -1.2275 2.3980 6.6947 42 1 -1.6104 0.6672 6.5345 43 1 -1.0292 1.3100 8.0895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439141113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:09 Heat of formation + Delta-G solvation = -105.085605 kcal Electronic energy + Delta-G solvation = -21103.770206 eV Core-core repulsion = 17955.198194 eV Total energy + Delta-G solvation = -3148.572012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.79058 -38.86687 -35.25106 -33.79742 -32.71128 -32.33279 -30.68523 -29.96646 -27.54683 -26.00378 -23.48272 -22.90690 -22.02173 -21.23090 -20.79486 -18.12421 -16.68913 -16.47984 -16.19951 -16.04521 -15.29924 -14.89600 -14.67629 -14.24066 -13.92284 -13.34310 -13.27767 -13.19040 -12.88879 -12.54303 -12.34803 -12.02232 -11.97054 -11.73706 -11.69307 -11.36568 -11.16475 -11.09829 -10.91169 -10.79905 -10.78954 -10.73198 -10.50002 -10.40377 -10.07915 -9.78933 -9.59415 -8.76534 -8.38930 -7.56828 -5.99682 -4.04296 3.34284 3.38470 3.41099 3.56873 3.71990 4.01889 4.46033 4.48070 4.53132 4.75953 4.83821 5.04175 5.13089 5.19366 5.30318 5.33924 5.36781 5.41231 5.46262 5.52867 5.65985 5.67293 5.71450 5.76863 5.84273 5.86138 5.94240 5.96698 5.98661 6.16273 6.29953 6.31984 6.46110 6.59006 6.86779 7.15575 7.51836 7.64103 7.97431 8.29669 8.53774 8.95924 9.20841 9.60690 11.08328 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.003853 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.369968 B = 7265.857173 C = 7822.798110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.599 5.599 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.546 6.546 15 C -0.138 4.138 16 C -0.096 4.096 17 C 0.076 3.924 18 H 0.067 0.933 19 C -0.152 4.152 20 C -0.151 4.151 21 C 0.068 3.932 22 H 0.065 0.935 23 C -0.146 4.146 24 O -0.366 6.366 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 -7.166 19.953 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.424 6.424 15 C -0.178 4.178 16 C -0.133 4.133 17 C 0.018 3.982 18 H 0.085 0.915 19 C -0.190 4.190 20 C -0.189 4.189 21 C 0.010 3.990 22 H 0.083 0.917 23 C -0.204 4.204 24 O -0.285 6.285 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.154 -6.446 19.579 21.512 hybrid contribution 1.139 -0.284 -0.279 1.207 sum -5.014 -6.731 19.300 21.046 Atomic orbital electron populations 1.22217 0.96875 1.01307 1.02340 1.21388 0.93482 0.84286 1.02498 1.48259 1.63787 1.13227 1.07831 1.19235 0.96100 0.93639 0.78355 1.21422 0.97008 1.31772 1.06209 0.92578 1.24941 0.97810 0.94985 0.96423 1.69929 1.35696 1.33451 1.14403 0.86566 0.84881 0.78205 0.77789 1.20285 1.21205 1.20209 1.20402 0.78245 0.86947 0.85295 1.90649 1.46086 1.18296 1.87399 1.21687 1.03490 0.99437 0.93172 1.21395 1.03111 0.98395 0.90444 1.23062 0.82133 0.97613 0.95374 0.91459 1.22985 0.99103 1.01721 0.95176 1.23001 0.97169 1.00142 0.98590 1.22941 0.96085 0.97863 0.82084 0.91669 1.21796 0.94762 1.02909 1.00890 1.89174 1.23971 1.92702 1.22675 0.92895 0.92184 0.92302 0.90186 0.91722 0.95169 0.93994 0.92721 0.89877 0.89104 0.90404 0.89867 0.90277 0.90609 0.90661 0.90871 0.91726 0.91909 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.11 1.81 5.93 -4.04 -0.02 1.79 16 3 N -0.60 -13.14 2.46 -175.05 -0.43 -13.57 16 4 C 0.25 6.63 5.16 -5.19 -0.03 6.60 16 5 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.50 10.87 7.67 -10.98 -0.08 10.78 16 14 O -0.55 -14.15 15.56 5.56 0.09 -14.06 16 15 C -0.14 -2.17 4.19 -27.88 -0.12 -2.28 16 16 C -0.10 -1.40 4.13 -26.73 -0.11 -1.51 16 17 C 0.08 0.89 3.24 -25.96 -0.08 0.81 16 18 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.15 -1.49 6.63 -25.17 -0.17 -1.66 16 20 C -0.15 -1.28 6.63 -25.16 -0.17 -1.44 16 21 C 0.07 0.65 3.92 -25.95 -0.10 0.55 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 23 C -0.15 -1.19 9.52 37.16 0.35 -0.83 16 24 O -0.37 -4.66 10.83 -35.23 -0.38 -5.04 16 25 H 0.05 0.75 7.22 -51.93 -0.38 0.37 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 29 H 0.06 0.92 6.44 -51.93 -0.33 0.58 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.08 1.15 7.40 -51.93 -0.38 0.77 16 34 H 0.09 1.34 7.06 -51.93 -0.37 0.98 16 35 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -33.65 348.13 -8.02 -41.68 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.69 Total: -1.87 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.57 Total: -3.16 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.31 Total: -39.96 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.30 Total: -19.10 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.65 -8.02 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439141113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.409 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds