Wall clock time and date at job start Mon Mar 30 2020 01:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47187 * 2 1 4 4 C 1.46499 * 119.99860 * 270.00644 * 3 2 1 5 5 C 1.50710 * 109.46826 * 269.99468 * 4 3 2 6 6 H 1.07995 * 119.99847 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99694 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00227 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99565 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47299 * 60.00070 * 9 7 5 11 11 H 1.48499 * 109.46909 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47242 * 299.99786 * 9 7 5 13 13 C 1.34776 * 120.00134 * 89.99894 * 3 2 1 14 14 O 1.21279 * 120.00402 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99675 * 0.02562 * 13 3 2 16 16 C 1.53001 * 109.46870 * 179.97438 * 15 13 3 17 17 C 1.52998 * 109.47152 * 179.97438 * 16 15 13 18 18 H 1.09004 * 110.32912 * 52.74958 * 17 16 15 19 19 C 1.54472 * 110.37541 * 175.00108 * 17 16 15 20 20 C 1.54505 * 104.06681 * 142.92132 * 19 17 16 21 21 C 1.54487 * 104.06179 * 0.02562 * 20 19 17 22 22 H 1.08997 * 110.37332 * 94.85398 * 21 20 19 23 23 C 1.52999 * 110.37340 * 217.18979 * 21 20 19 24 24 O 1.44421 * 104.79872 * 336.02098 * 21 20 19 25 25 H 1.09000 * 109.47026 * 299.99823 * 1 2 3 26 26 H 1.08995 * 109.47698 * 59.99529 * 1 2 3 27 27 H 1.09008 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46598 * 239.99981 * 2 1 3 29 29 H 1.09003 * 109.47394 * 120.00384 * 2 1 3 30 30 H 1.08998 * 109.47796 * 29.99629 * 4 3 2 31 31 H 1.09005 * 109.47433 * 150.00215 * 4 3 2 32 32 H 0.97000 * 119.99443 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47359 * 59.99778 * 15 13 3 34 34 H 1.08995 * 109.46953 * 299.99761 * 15 13 3 35 35 H 1.09000 * 109.46911 * 59.99994 * 16 15 13 36 36 H 1.08999 * 109.47230 * 300.00285 * 16 15 13 37 37 H 1.09003 * 110.51251 * 24.27609 * 19 17 16 38 38 H 1.09005 * 110.63087 * 261.62566 * 19 17 16 39 39 H 1.09003 * 110.51737 * 241.36166 * 20 19 17 40 40 H 1.09000 * 110.51297 * 118.64595 * 20 19 17 41 41 H 1.09010 * 109.46831 * 59.99653 * 23 21 20 42 42 H 1.08996 * 109.46987 * 179.97438 * 23 21 20 43 43 H 1.08996 * 109.46862 * 300.00235 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2623 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3905 -2.8775 8 7 3.3494 3.1274 -3.6171 9 14 5.9133 2.0965 -3.4172 10 1 6.1401 0.6398 -3.5956 11 1 6.1607 2.7966 -4.7032 12 1 6.8412 2.6188 -2.3821 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3242 2.2431 3.6352 17 6 2.0691 1.5219 4.9602 18 1 2.5941 0.5669 4.9787 19 6 2.5153 2.4040 6.1472 20 6 1.4571 2.1283 7.2387 21 6 0.4969 1.1116 6.5821 22 1 0.7810 0.0939 6.8497 23 6 -0.9464 1.3917 7.0058 24 8 0.6535 1.3204 5.1617 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5816 1.6878 -2.0284 31 1 2.0954 3.1411 -1.1384 32 1 3.6757 3.5185 -4.4427 33 1 2.6228 0.4186 2.5298 34 1 0.9445 1.0114 2.5302 35 1 1.6939 3.1306 3.5778 36 1 3.3721 2.5373 3.5771 37 1 2.5074 3.4568 5.8649 38 1 3.5063 2.1098 6.4931 39 1 0.9258 3.0446 7.4959 40 1 1.9244 1.6955 8.1232 41 1 -1.2275 2.3980 6.6947 42 1 -1.6104 0.6672 6.5345 43 1 -1.0292 1.3100 8.0895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439141113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:09 Heat of formation + Delta-G solvation = -126.304747 kcal Electronic energy + Delta-G solvation = -21104.690337 eV Core-core repulsion = 17955.198194 eV Total energy + Delta-G solvation = -3149.492143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.92015 -40.28025 -36.98959 -35.12769 -34.64940 -33.11986 -31.82510 -31.38971 -29.27662 -27.31873 -25.07508 -24.30897 -23.29997 -22.15205 -21.67787 -19.77504 -18.62896 -17.87748 -17.52040 -17.07654 -16.95528 -16.24477 -16.04931 -15.81204 -14.74721 -14.70310 -14.63217 -14.47046 -14.11652 -13.86946 -13.56115 -13.38044 -13.24150 -13.05546 -13.02184 -12.73673 -12.58817 -12.52595 -12.38880 -12.23676 -12.05820 -11.81595 -11.73182 -11.73110 -11.59472 -11.46363 -10.64748 -10.61840 -10.54336 -9.42730 -8.22432 -6.38044 1.35950 1.40789 1.48190 1.87010 2.31464 2.46916 2.92283 3.06512 3.58580 3.73475 3.86321 3.99978 4.06138 4.11938 4.17712 4.34198 4.42536 4.44017 4.53612 4.58467 4.64807 4.69429 4.71230 4.84526 4.94651 4.98308 4.98834 5.00927 5.04788 5.14521 5.18584 5.22687 5.24242 5.29145 5.34318 5.39399 5.58152 5.87338 6.06222 6.06823 6.69664 6.82492 7.28016 7.51152 8.84621 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.003853 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.369968 B = 7265.857173 C = 7822.798110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.971 3.029 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.492 3.508 14 O -0.602 6.602 15 C -0.120 4.120 16 C -0.092 4.092 17 C 0.080 3.920 18 H 0.087 0.913 19 C -0.154 4.154 20 C -0.146 4.146 21 C 0.060 3.940 22 H 0.080 0.920 23 C -0.145 4.145 24 O -0.392 6.392 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.019 0.981 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 -9.696 21.895 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.336 5.336 4 C 0.140 3.860 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.794 3.206 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.282 3.718 14 O -0.484 6.484 15 C -0.160 4.160 16 C -0.131 4.131 17 C 0.023 3.977 18 H 0.105 0.895 19 C -0.192 4.192 20 C -0.184 4.184 21 C 0.003 3.997 22 H 0.098 0.902 23 C -0.202 4.202 24 O -0.312 6.312 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.037 0.963 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.548 -9.027 21.542 24.007 hybrid contribution 0.872 0.522 -0.877 1.342 sum -4.676 -8.506 20.665 22.831 Atomic orbital electron populations 1.22146 0.94846 1.03455 1.01439 1.21733 0.95134 0.81366 1.03920 1.48324 1.63830 1.15142 1.06317 1.18681 0.95356 0.91361 0.80605 1.21703 0.97838 1.32107 1.06639 0.92714 1.25919 1.02651 0.94409 0.96378 1.70060 1.37942 1.34146 1.14849 0.85426 0.78702 0.79090 0.77338 1.18308 1.20328 1.20206 1.21514 0.76826 0.86556 0.86890 1.90615 1.48532 1.20943 1.88310 1.21658 1.05007 0.99756 0.89543 1.21332 1.01955 0.97710 0.92055 1.23007 0.82342 0.98353 0.94012 0.89526 1.23004 1.00554 1.00608 0.95007 1.23004 0.96535 1.00077 0.98786 1.23197 0.97018 0.98939 0.80552 0.90180 1.21820 0.94021 1.02059 1.02344 1.89143 1.24277 1.92927 1.24864 0.92469 0.94441 0.88540 0.90974 0.88022 0.96265 0.98915 0.92396 0.86875 0.87464 0.92988 0.90836 0.91673 0.88840 0.90752 0.88559 0.92935 0.92147 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 10.24 71.98 0.74 -3.61 16 2 C 0.10 3.24 5.93 86.38 0.51 3.75 16 3 N -0.61 -27.01 2.46 -826.13 -2.03 -29.04 16 4 C 0.26 14.79 5.16 85.64 0.44 15.23 16 5 C -0.54 -32.40 9.39 25.60 0.24 -32.16 16 6 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 9 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.49 21.64 7.67 87.66 0.67 22.31 16 14 O -0.60 -32.82 15.56 -3.02 -0.05 -32.87 16 15 C -0.12 -3.61 4.19 29.85 0.13 -3.48 16 16 C -0.09 -2.67 4.13 30.59 0.13 -2.54 16 17 C 0.08 1.72 3.24 31.09 0.10 1.83 16 18 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 19 C -0.15 -2.74 6.63 31.61 0.21 -2.53 16 20 C -0.15 -2.09 6.63 31.61 0.21 -1.88 16 21 C 0.06 0.99 3.92 31.10 0.12 1.11 16 22 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 23 C -0.15 -2.06 9.52 71.98 0.69 -1.37 16 24 O -0.39 -9.24 10.83 -148.98 -1.61 -10.85 16 25 H 0.06 1.50 7.22 -2.39 -0.02 1.48 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.07 2.44 8.07 -2.38 -0.02 2.42 16 29 H 0.10 2.53 6.44 -2.39 -0.02 2.51 16 30 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 31 H -0.01 -0.48 7.42 -2.38 -0.02 -0.49 16 32 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 33 H 0.11 2.76 7.40 -2.39 -0.02 2.74 16 34 H 0.11 2.92 7.06 -2.39 -0.02 2.91 16 35 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 36 H 0.07 2.24 8.10 -2.39 -0.02 2.22 16 37 H 0.06 1.33 7.87 -2.39 -0.02 1.31 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.07 1.07 7.87 -2.39 -0.02 1.05 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -76.95 348.13 4.22 -72.73 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.95 Total: 12.44 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 4.64 Total: -2.58 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -1.74 Total: -86.62 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.66 Total: -43.72 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -76.95 4.22 -72.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439141113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.574 kcal (2) G-P(sol) polarization free energy of solvation -76.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds