Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34232 * 116.99878 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00049 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99727 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47646 * 60.00176 * 6 4 3 8 8 C 1.53004 * 109.47319 * 299.99634 * 6 4 3 9 9 C 1.52997 * 109.47257 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.46880 * 60.00517 * 9 8 6 11 11 C 1.52997 * 109.47342 * 299.99761 * 10 9 8 12 12 C 1.52997 * 109.47264 * 60.00079 * 11 10 9 13 13 H 1.08995 * 109.47593 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47133 * 60.00034 * 12 11 10 15 15 C 1.46892 * 110.99949 * 85.00336 * 14 12 11 16 16 C 1.53003 * 109.47317 * 180.02562 * 15 14 12 17 17 C 1.50704 * 109.47199 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99914 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99731 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00310 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99715 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47216 * 89.99654 * 21 19 17 23 23 H 1.48497 * 109.46881 * 209.99408 * 21 19 17 24 24 H 1.48499 * 109.47168 * 329.99200 * 21 19 17 25 25 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 26 26 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 27 27 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 30 30 H 1.09001 * 109.47204 * 300.00812 * 8 6 4 31 31 H 1.09008 * 109.46661 * 60.00193 * 8 6 4 32 32 H 1.08997 * 109.47186 * 300.00540 * 9 8 6 33 33 H 1.09003 * 109.47116 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47146 * 179.97438 * 10 9 8 35 35 H 1.09002 * 109.47638 * 59.99886 * 10 9 8 36 36 H 1.08997 * 109.47193 * 300.00264 * 11 10 9 37 37 H 1.08995 * 109.47425 * 179.97438 * 11 10 9 38 38 H 1.00904 * 110.99779 * 208.95656 * 14 12 11 39 39 H 1.09002 * 109.47107 * 299.99946 * 15 14 12 40 40 H 1.09000 * 109.47438 * 60.00057 * 15 14 12 41 41 H 1.09002 * 109.46755 * 299.99877 * 16 15 14 42 42 H 1.09000 * 109.47053 * 59.99536 * 16 15 14 43 43 H 0.96998 * 120.00445 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5853 3.4691 0.8905 8 6 3.4487 3.6851 -1.2486 9 6 4.0329 5.0991 -1.2477 10 6 5.5608 5.0196 -1.2482 11 6 6.0330 4.2719 0.0003 12 6 5.4488 2.8579 -0.0005 13 1 5.7848 2.3254 0.8892 14 7 5.9014 2.1417 -1.2006 15 6 7.2187 1.5293 -0.9826 16 6 7.6560 0.7948 -2.2516 17 6 9.0071 0.1660 -2.0277 18 1 9.5044 0.2793 -1.0758 19 6 9.6088 -0.5531 -3.0386 20 7 9.0035 -0.6907 -4.1980 21 14 11.2839 -1.3319 -2.7614 22 1 11.1085 -2.7059 -2.2259 23 1 12.0206 -1.3929 -4.0493 24 1 12.0543 -0.5160 -1.7887 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7841 3.1534 -2.1391 31 1 2.3601 3.7421 -1.2480 32 1 3.6970 5.6305 -0.3573 33 1 3.6962 5.6320 -2.1371 34 1 5.9771 6.0270 -1.2480 35 1 5.8968 4.4882 -2.1387 36 1 5.6971 4.8033 0.8908 37 1 7.1215 4.2149 -0.0003 38 1 5.2241 1.4505 -1.4862 39 1 7.9455 2.3059 -0.7441 40 1 7.1582 0.8220 -0.1555 41 1 6.9293 0.0182 -2.4905 42 1 7.7165 1.5024 -3.0784 43 1 9.4266 -1.1968 -4.9091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451587684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = -115.734365 kcal Electronic energy + Delta-G solvation = -21548.158665 eV Core-core repulsion = 18399.124888 eV Total energy + Delta-G solvation = -3149.033777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86896 -38.56558 -36.50459 -34.65104 -32.64928 -32.11503 -30.94310 -30.17972 -27.77723 -24.54247 -23.82621 -22.87162 -22.03117 -21.01730 -20.25967 -18.83051 -17.62842 -16.61648 -16.51953 -16.15408 -15.27444 -15.11324 -14.46054 -14.29108 -13.98251 -13.71025 -13.32369 -13.17904 -12.88760 -12.56837 -12.35519 -12.21107 -12.13576 -11.80720 -11.71435 -11.58725 -11.15254 -10.99838 -10.89091 -10.67253 -10.59704 -10.48714 -10.40397 -10.13526 -9.94167 -9.72558 -9.23630 -9.04833 -8.27165 -7.64160 -5.91923 -3.93594 2.23049 2.62041 3.36964 3.42525 3.46306 4.45668 4.51557 4.65313 4.70523 4.77844 4.83624 5.02804 5.12158 5.14745 5.25965 5.39874 5.43071 5.44053 5.51182 5.55839 5.59380 5.67750 5.76176 5.86020 5.96543 6.05935 6.24097 6.28519 6.32090 6.41640 6.45029 6.50894 6.64829 6.75875 7.14360 7.60987 7.75676 7.85908 7.94510 8.11895 8.19760 8.54206 9.13778 9.69393 11.19703 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017044 B = 0.004796 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.412964 B = 5837.270145 C = 6976.497334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.460 3.540 5 O -0.495 6.495 6 C -0.079 4.079 7 H 0.107 0.893 8 C -0.105 4.105 9 C -0.111 4.111 10 C -0.115 4.115 11 C -0.103 4.103 12 C 0.100 3.900 13 H 0.045 0.955 14 N -0.678 5.678 15 C 0.070 3.930 16 C 0.027 3.973 17 C -0.517 4.517 18 H 0.053 0.947 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.339 0.661 39 H 0.055 0.945 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.023 0.977 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.946 9.256 9.013 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.303 3.697 5 O -0.381 6.381 6 C -0.099 4.099 7 H 0.125 0.875 8 C -0.142 4.142 9 C -0.148 4.148 10 C -0.153 4.153 11 C -0.141 4.141 12 C -0.011 4.011 13 H 0.063 0.937 14 N -0.313 5.313 15 C -0.058 4.058 16 C -0.010 4.010 17 C -0.556 4.556 18 H 0.071 0.929 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.160 0.840 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.042 0.958 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.476 9.404 8.541 20.804 hybrid contribution 0.715 -1.561 0.761 1.878 sum -15.761 7.843 9.302 19.910 Atomic orbital electron populations 1.21793 0.92739 1.02889 1.03352 1.23029 0.95213 0.80426 1.02845 1.86492 1.24770 1.32244 1.84136 1.23963 0.80509 0.92950 0.72297 1.90733 1.60051 1.43057 1.44296 1.21367 0.96748 0.89446 1.02319 0.87541 1.21452 0.99926 0.96316 0.96546 1.21464 0.96498 0.95432 1.01429 1.21449 0.94513 0.99322 0.99981 1.21499 1.01034 0.93984 0.97632 1.21339 0.89564 0.96067 0.94151 0.93694 1.60819 1.06076 1.33352 1.31022 1.22109 0.87985 0.95974 0.99718 1.19033 0.95462 0.94685 0.91825 1.21197 1.03329 1.32328 0.98779 0.92852 1.24992 0.97697 0.96490 0.95197 1.69978 1.38369 1.41400 1.03661 0.86606 0.84331 0.79672 0.77445 1.20775 1.21246 1.19909 0.91665 0.91454 0.90322 0.90956 0.91349 0.90109 0.91419 0.92511 0.91782 0.92844 0.89728 0.92584 0.91243 0.84025 0.92676 0.96579 0.96980 0.95848 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 37.16 0.38 -0.76 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.55 10.12 -39.26 -0.40 -4.95 16 4 C 0.46 6.72 6.72 36.00 0.24 6.96 16 5 O -0.50 -9.05 14.03 -18.75 -0.26 -9.31 16 6 C -0.08 -1.00 2.41 -91.77 -0.22 -1.22 16 7 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 8 C -0.10 -1.21 4.97 -26.73 -0.13 -1.34 16 9 C -0.11 -1.15 5.92 -26.73 -0.16 -1.31 16 10 C -0.12 -1.43 5.77 -26.73 -0.15 -1.58 16 11 C -0.10 -1.36 5.53 -26.73 -0.15 -1.51 16 12 C 0.10 1.51 1.85 -67.71 -0.13 1.39 16 13 H 0.05 0.75 7.76 -51.93 -0.40 0.34 16 14 N -0.68 -12.84 4.67 -106.72 -0.50 -13.34 16 15 C 0.07 1.59 5.42 -3.83 -0.02 1.57 16 16 C 0.03 0.75 5.23 -27.88 -0.15 0.61 16 17 C -0.52 -15.35 9.11 -34.44 -0.31 -15.66 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.83 13.29 55.43 0.74 -27.10 16 21 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 30 H 0.08 1.10 7.48 -51.93 -0.39 0.71 16 31 H 0.07 0.68 8.11 -51.92 -0.42 0.26 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.27 7.60 -51.93 -0.39 0.88 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.01 7.45 -51.93 -0.39 0.62 16 38 H 0.34 6.82 5.86 -39.29 -0.23 6.59 16 39 H 0.05 1.22 7.43 -51.93 -0.39 0.83 16 40 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -32.56 341.35 -8.61 -41.17 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.64 Total: 1.39 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.66 Total: -10.37 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.24 Total: -40.43 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.66 Total: -14.26 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.56 -8.61 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451587684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.566 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds