Wall clock time and date at job start Mon Mar 30 2020 01:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46868 * 2 1 4 4 C 1.46506 * 120.00055 * 270.00104 * 3 2 1 5 5 C 1.50697 * 109.46876 * 269.99991 * 4 3 2 6 6 H 1.08006 * 120.00477 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99886 * 180.02562 * 5 4 3 8 8 N 1.31504 * 119.99953 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99709 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47080 * 90.00229 * 9 7 5 11 11 H 1.48503 * 109.47008 * 209.99587 * 9 7 5 12 12 H 1.48500 * 109.47585 * 329.99912 * 9 7 5 13 13 C 1.34775 * 119.99925 * 90.00185 * 3 2 1 14 14 O 1.21280 * 119.99930 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99971 * 359.97438 * 13 3 2 16 16 O 1.42902 * 109.47205 * 180.02562 * 15 13 3 17 17 C 1.42898 * 114.00186 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47319 * 180.02562 * 17 16 15 19 19 C 1.54267 * 110.03373 * 292.91285 * 18 17 16 20 20 C 1.54968 * 104.16137 * 217.13581 * 19 18 17 21 21 C 1.54884 * 102.77441 * 37.88396 * 20 19 18 22 22 C 1.53874 * 110.03593 * 175.69205 * 18 17 16 23 23 H 1.09000 * 109.47405 * 299.99866 * 1 2 3 24 24 H 1.09000 * 109.47010 * 59.99875 * 1 2 3 25 25 H 1.09003 * 109.46553 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47405 * 240.00134 * 2 1 3 27 27 H 1.09000 * 109.47010 * 120.00125 * 2 1 3 28 28 H 1.08997 * 109.47087 * 30.00200 * 4 3 2 29 29 H 1.08998 * 109.46674 * 150.00089 * 4 3 2 30 30 H 0.97004 * 120.00013 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47017 * 60.00358 * 15 13 3 32 32 H 1.08999 * 109.47472 * 300.00035 * 15 13 3 33 33 H 1.09002 * 109.47259 * 300.00293 * 17 16 15 34 34 H 1.09001 * 109.47074 * 60.00315 * 17 16 15 35 35 H 1.09004 * 110.01939 * 54.29674 * 18 17 16 36 36 H 1.09001 * 110.48609 * 335.77840 * 19 18 17 37 37 H 1.08999 * 110.49311 * 98.42344 * 19 18 17 38 38 H 1.08997 * 110.72048 * 279.57487 * 20 19 18 39 39 H 1.08993 * 110.92252 * 156.29196 * 20 19 18 40 40 H 1.09009 * 110.48779 * 203.40596 * 21 20 19 41 41 H 1.09001 * 110.59973 * 80.82109 * 21 20 19 42 42 H 1.09003 * 110.03243 * 238.56963 * 22 18 17 43 43 H 1.09004 * 110.03196 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3496 3.1275 -3.6170 9 14 5.9138 2.0977 -3.4163 10 1 5.9777 0.8770 -4.2596 11 1 6.3927 3.2654 -4.1988 12 1 6.7737 1.9178 -2.2190 13 6 2.2429 2.0165 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3003 2.1819 3.5585 17 6 2.0945 1.6029 4.8485 18 6 2.4544 2.6242 5.9293 19 6 3.9706 2.9079 5.9045 20 6 4.3497 3.0744 7.3978 21 6 3.4698 2.0077 8.0955 22 6 2.1358 2.0525 7.3220 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5816 1.6878 -2.0284 29 1 2.0954 3.1411 -1.1383 30 1 3.6757 3.5180 -4.4430 31 1 2.6212 0.4186 2.5302 32 1 0.9432 1.0125 2.5299 33 1 1.0485 1.3152 4.9550 34 1 2.7266 0.7214 4.9562 35 1 1.8991 3.5485 5.7692 36 1 4.5087 2.0675 5.4660 37 1 4.1783 3.8247 5.3529 38 1 4.0971 4.0743 7.7506 39 1 5.4077 2.8662 7.5564 40 1 3.3126 2.2680 9.1423 41 1 3.9256 1.0210 8.0131 42 1 1.4265 2.6997 7.8379 43 1 1.7244 1.0475 7.2278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454953400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:50 Heat of formation + Delta-G solvation = -102.558653 kcal Electronic energy + Delta-G solvation = -20916.634227 eV Core-core repulsion = 17768.171792 eV Total energy + Delta-G solvation = -3148.462435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.31535 -38.55883 -36.71516 -35.19028 -32.79536 -30.65909 -30.08974 -28.83364 -28.30829 -26.19744 -24.26661 -23.02153 -22.40728 -20.79991 -19.82669 -18.39640 -17.05770 -16.49934 -16.18371 -15.93327 -15.70279 -15.15281 -14.91896 -14.31799 -14.03890 -13.69665 -13.45726 -13.37216 -12.80331 -12.66664 -12.04832 -11.94812 -11.88013 -11.47818 -11.37596 -11.25997 -11.16952 -11.11045 -10.89906 -10.84727 -10.76686 -10.67255 -10.52273 -10.47706 -10.10714 -9.61728 -9.50696 -8.79944 -8.41344 -7.65153 -6.02030 -4.06614 3.31653 3.34694 3.38780 3.43126 3.46499 4.22795 4.46778 4.49476 4.50350 4.70607 5.04962 5.12116 5.19170 5.27380 5.32162 5.33343 5.34310 5.39533 5.46042 5.50026 5.52253 5.62880 5.63423 5.66222 5.74471 5.77638 5.90233 5.97056 6.01086 6.14710 6.22076 6.25190 6.34382 6.46968 7.01182 7.28140 7.47325 7.58030 7.94835 8.25903 8.42631 8.93031 9.13045 9.58397 11.06101 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.003959 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.020020 B = 7070.591642 C = 7955.832061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.520 6.520 15 C 0.045 3.955 16 O -0.359 6.359 17 C 0.067 3.933 18 C -0.091 4.091 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.117 4.117 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 -7.462 19.303 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.396 6.396 15 C -0.035 4.035 16 O -0.277 6.277 17 C -0.010 4.010 18 C -0.110 4.110 19 C -0.152 4.152 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.155 4.155 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.290 -6.532 19.088 20.626 hybrid contribution 0.774 -0.591 -0.431 1.065 sum -3.516 -7.123 18.658 20.278 Atomic orbital electron populations 1.22239 0.96775 1.01422 1.02408 1.21435 0.93541 0.84245 1.02698 1.48218 1.64291 1.13270 1.07391 1.19274 0.96284 0.93690 0.77838 1.21451 0.96959 1.31876 1.06255 0.92455 1.24936 0.97872 0.94897 0.96415 1.69931 1.35724 1.33403 1.14341 0.86495 0.84702 0.77642 0.78574 1.20665 1.21072 1.19878 1.19926 0.79301 0.87153 0.84521 1.90692 1.44299 1.17727 1.86842 1.22367 1.00333 0.93326 0.87445 1.88041 1.88255 1.38821 1.12632 1.22688 0.99101 0.95824 0.83421 1.21748 0.97579 0.98861 0.92780 1.22379 0.94522 1.02535 0.95781 1.22545 0.99326 0.98895 0.95744 1.22357 0.95630 0.99384 0.98833 1.22133 0.97744 1.01025 0.94603 0.93142 0.91883 0.92122 0.89738 0.91951 0.94886 0.93850 0.92727 0.91139 0.91202 0.93610 0.93409 0.90066 0.91468 0.91023 0.91607 0.91691 0.91862 0.91713 0.91507 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.89 2.46 -175.06 -0.43 -13.32 16 4 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 5 C -0.53 -15.17 9.39 -34.44 -0.32 -15.50 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 13 C 0.51 11.16 7.75 -10.99 -0.09 11.07 16 14 O -0.52 -14.17 16.08 -14.35 -0.23 -14.40 16 15 C 0.05 0.73 4.97 36.00 0.18 0.91 16 16 O -0.36 -6.15 9.71 -55.14 -0.54 -6.69 16 17 C 0.07 0.81 4.98 37.16 0.19 1.00 16 18 C -0.09 -1.02 3.19 -89.50 -0.29 -1.31 16 19 C -0.11 -1.34 6.22 -25.03 -0.16 -1.50 16 20 C -0.13 -1.18 6.91 -24.70 -0.17 -1.35 16 21 C -0.12 -1.01 6.83 -25.08 -0.17 -1.18 16 22 C -0.12 -1.00 6.46 -25.61 -0.17 -1.17 16 23 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 27 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 28 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.07 0.98 7.40 -51.93 -0.38 0.60 16 32 H 0.07 0.93 7.18 -51.93 -0.37 0.56 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.52 8.02 -51.93 -0.42 0.11 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.82 7.77 -51.93 -0.40 0.42 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -34.17 348.68 -8.67 -42.84 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.68 Total: -3.62 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.76 Total: -1.01 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.31 Total: -39.50 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.77 Total: -21.09 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.17 -8.67 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454953400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.720 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds