Wall clock time and date at job start Mon Mar 30 2020 01:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46868 * 2 1 4 4 C 1.46506 * 120.00055 * 270.00104 * 3 2 1 5 5 C 1.50697 * 109.46876 * 269.99991 * 4 3 2 6 6 H 1.08006 * 120.00477 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99886 * 180.02562 * 5 4 3 8 8 N 1.31504 * 119.99953 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99709 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47080 * 90.00229 * 9 7 5 11 11 H 1.48503 * 109.47008 * 209.99587 * 9 7 5 12 12 H 1.48500 * 109.47585 * 329.99912 * 9 7 5 13 13 C 1.34775 * 119.99925 * 90.00185 * 3 2 1 14 14 O 1.21280 * 119.99930 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99971 * 359.97438 * 13 3 2 16 16 O 1.42902 * 109.47205 * 180.02562 * 15 13 3 17 17 C 1.42898 * 114.00186 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47319 * 180.02562 * 17 16 15 19 19 C 1.54267 * 110.03373 * 292.91285 * 18 17 16 20 20 C 1.54968 * 104.16137 * 217.13581 * 19 18 17 21 21 C 1.54884 * 102.77441 * 37.88396 * 20 19 18 22 22 C 1.53874 * 110.03593 * 175.69205 * 18 17 16 23 23 H 1.09000 * 109.47405 * 299.99866 * 1 2 3 24 24 H 1.09000 * 109.47010 * 59.99875 * 1 2 3 25 25 H 1.09003 * 109.46553 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47405 * 240.00134 * 2 1 3 27 27 H 1.09000 * 109.47010 * 120.00125 * 2 1 3 28 28 H 1.08997 * 109.47087 * 30.00200 * 4 3 2 29 29 H 1.08998 * 109.46674 * 150.00089 * 4 3 2 30 30 H 0.97004 * 120.00013 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47017 * 60.00358 * 15 13 3 32 32 H 1.08999 * 109.47472 * 300.00035 * 15 13 3 33 33 H 1.09002 * 109.47259 * 300.00293 * 17 16 15 34 34 H 1.09001 * 109.47074 * 60.00315 * 17 16 15 35 35 H 1.09004 * 110.01939 * 54.29674 * 18 17 16 36 36 H 1.09001 * 110.48609 * 335.77840 * 19 18 17 37 37 H 1.08999 * 110.49311 * 98.42344 * 19 18 17 38 38 H 1.08997 * 110.72048 * 279.57487 * 20 19 18 39 39 H 1.08993 * 110.92252 * 156.29196 * 20 19 18 40 40 H 1.09009 * 110.48779 * 203.40596 * 21 20 19 41 41 H 1.09001 * 110.59973 * 80.82109 * 21 20 19 42 42 H 1.09003 * 110.03243 * 238.56963 * 22 18 17 43 43 H 1.09004 * 110.03196 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3496 3.1275 -3.6170 9 14 5.9138 2.0977 -3.4163 10 1 5.9777 0.8770 -4.2596 11 1 6.3927 3.2654 -4.1988 12 1 6.7737 1.9178 -2.2190 13 6 2.2429 2.0165 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3003 2.1819 3.5585 17 6 2.0945 1.6029 4.8485 18 6 2.4544 2.6242 5.9293 19 6 3.9706 2.9079 5.9045 20 6 4.3497 3.0744 7.3978 21 6 3.4698 2.0077 8.0955 22 6 2.1358 2.0525 7.3220 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5816 1.6878 -2.0284 29 1 2.0954 3.1411 -1.1383 30 1 3.6757 3.5180 -4.4430 31 1 2.6212 0.4186 2.5302 32 1 0.9432 1.0125 2.5299 33 1 1.0485 1.3152 4.9550 34 1 2.7266 0.7214 4.9562 35 1 1.8991 3.5485 5.7692 36 1 4.5087 2.0675 5.4660 37 1 4.1783 3.8247 5.3529 38 1 4.0971 4.0743 7.7506 39 1 5.4077 2.8662 7.5564 40 1 3.3126 2.2680 9.1423 41 1 3.9256 1.0210 8.0131 42 1 1.4265 2.6997 7.8379 43 1 1.7244 1.0475 7.2278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454953400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:49 Heat of formation + Delta-G solvation = -123.422384 kcal Electronic energy + Delta-G solvation = -20917.538946 eV Core-core repulsion = 17768.171792 eV Total energy + Delta-G solvation = -3149.367154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85544 -39.59799 -37.84718 -36.91652 -34.93089 -31.80770 -31.44563 -29.95349 -29.51341 -27.92708 -25.27589 -24.69924 -23.99710 -21.54004 -20.72452 -19.96223 -18.66421 -18.29669 -17.63347 -17.23588 -16.99109 -16.48966 -16.11020 -15.86158 -15.46778 -14.94576 -14.68553 -14.42454 -14.20120 -14.02050 -13.67084 -13.37795 -13.23431 -13.13287 -12.80297 -12.65126 -12.46168 -12.18465 -12.13119 -11.96760 -11.93282 -11.89600 -11.74113 -11.65372 -11.48274 -11.30527 -10.65383 -10.60769 -10.55940 -9.48281 -8.23787 -6.38831 1.35102 1.38939 1.49070 1.75856 1.98768 2.37917 2.97312 3.05940 3.65043 3.71164 3.74947 3.92460 4.01733 4.19303 4.26359 4.36529 4.42234 4.43756 4.51461 4.57956 4.63918 4.68880 4.76816 4.86003 4.92146 4.92531 4.97976 5.04167 5.08127 5.10515 5.19875 5.25853 5.36217 5.39241 5.47840 5.49271 5.55863 5.82305 6.04741 6.18493 6.68857 6.75994 7.26516 7.45329 8.83570 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.003959 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.020020 B = 7070.591642 C = 7955.832061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.601 5.601 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.492 3.508 14 O -0.590 6.590 15 C 0.060 3.940 16 O -0.399 6.399 17 C 0.062 3.938 18 C -0.095 4.095 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.111 4.111 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.026 0.974 29 H -0.007 1.007 30 H 0.268 0.732 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -10.339 21.229 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.333 5.333 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.280 3.720 14 O -0.470 6.470 15 C -0.019 4.019 16 O -0.318 6.318 17 C -0.014 4.014 18 C -0.113 4.113 19 C -0.159 4.159 20 C -0.163 4.163 21 C -0.158 4.158 22 C -0.148 4.148 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.044 0.956 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.408 -9.475 21.031 23.485 hybrid contribution 0.763 0.326 -1.024 1.318 sum -3.644 -9.149 20.008 22.300 Atomic orbital electron populations 1.22175 0.94398 1.03719 1.01731 1.21834 0.95474 0.80965 1.04287 1.48253 1.63982 1.15321 1.05779 1.18711 0.95458 0.91417 0.80240 1.21725 0.97902 1.32152 1.06612 0.92836 1.25890 1.02563 0.94379 0.96415 1.70052 1.37879 1.34089 1.14806 0.85389 0.78761 0.78314 0.78178 1.18476 1.20613 1.19898 1.21121 0.77709 0.86664 0.86518 1.90650 1.47434 1.20917 1.88010 1.22285 1.03092 0.92617 0.83920 1.88015 1.88854 1.40473 1.14471 1.22967 1.00937 0.96306 0.81196 1.21809 0.96632 0.98400 0.94493 1.22387 0.95421 1.00778 0.97278 1.22538 1.00089 0.99701 0.93950 1.22362 0.94897 0.99107 0.99420 1.22113 0.98258 1.01879 0.92572 0.92151 0.94299 0.88225 0.90581 0.87918 0.95565 0.98901 0.92357 0.88037 0.87438 0.91237 0.91693 0.91827 0.92207 0.93947 0.91505 0.91158 0.90270 0.91032 0.90645 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.24 71.98 0.74 -3.13 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -26.24 2.46 -826.15 -2.03 -28.27 16 4 C 0.26 14.68 5.16 85.63 0.44 15.12 16 5 C -0.55 -32.37 9.39 25.60 0.24 -32.13 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 9 Si 0.97 45.86 29.54 68.60 2.03 47.88 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 13 C 0.49 22.01 7.75 87.66 0.68 22.69 16 14 O -0.59 -33.94 16.08 16.01 0.26 -33.68 16 15 C 0.06 1.81 4.97 71.24 0.35 2.16 16 16 O -0.40 -13.33 9.71 -129.94 -1.26 -14.59 16 17 C 0.06 1.36 4.98 71.98 0.36 1.72 16 18 C -0.09 -2.02 3.19 -10.07 -0.03 -2.06 16 19 C -0.12 -2.86 6.22 31.70 0.20 -2.66 16 20 C -0.13 -2.18 6.91 31.91 0.22 -1.96 16 21 C -0.12 -1.61 6.83 31.67 0.22 -1.40 16 22 C -0.11 -1.58 6.46 31.32 0.20 -1.38 16 23 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 27 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16 28 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 29 H -0.01 -0.47 7.42 -2.39 -0.02 -0.48 16 30 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 31 H 0.10 2.43 7.40 -2.39 -0.02 2.42 16 32 H 0.11 2.43 7.18 -2.39 -0.02 2.41 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.20 8.02 -2.39 -0.02 1.18 16 35 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.06 1.46 7.77 -2.39 -0.02 1.45 16 37 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 0.92 7.67 -2.38 -0.02 0.90 16 Total: -1.00 -80.04 348.68 4.82 -75.22 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.95 Total: 9.37 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 4.59 Total: 1.20 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -1.74 Total: -85.41 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -1.00 Total: -48.27 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -80.04 4.82 -75.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454953400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.200 kcal (2) G-P(sol) polarization free energy of solvation -80.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds