Wall clock time and date at job start Mon Mar 30 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 O 1.42903 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.42898 * 113.99905 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47333 * 179.97438 * 18 17 16 20 20 C 1.54272 * 110.03209 * 292.90629 * 19 18 17 21 21 C 1.54960 * 104.16076 * 217.13104 * 20 19 18 22 22 C 1.54893 * 102.77431 * 37.89127 * 21 20 19 23 23 C 1.53869 * 110.03482 * 175.68783 * 19 18 17 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 29 29 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 30 30 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 31 31 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 32 32 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 33 33 H 1.09008 * 109.46868 * 299.99489 * 18 17 16 34 34 H 1.09000 * 109.47650 * 59.99613 * 18 17 16 35 35 H 1.09002 * 110.01646 * 54.29493 * 19 18 17 36 36 H 1.08998 * 110.48424 * 335.78410 * 20 19 18 37 37 H 1.09002 * 110.48509 * 98.42296 * 20 19 18 38 38 H 1.08994 * 110.72321 * 279.57534 * 21 20 19 39 39 H 1.08999 * 110.92338 * 156.29093 * 21 20 19 40 40 H 1.09004 * 110.48627 * 203.40499 * 22 21 20 41 41 H 1.09001 * 110.60412 * 80.81353 * 22 21 20 42 42 H 1.09001 * 110.03207 * 238.56664 * 23 19 18 43 43 H 1.09000 * 110.03442 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 8 4.0892 0.1526 4.0918 18 6 4.6171 -0.4249 5.2876 19 6 5.4452 0.6211 6.0365 20 6 6.7084 0.9751 5.2248 21 6 7.8071 1.1717 6.2997 22 6 7.4727 0.0706 7.3366 23 6 5.9308 0.0466 7.3788 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 2.4158 -2.7376 0.9718 29 1 1.6238 -2.2851 2.5003 30 1 0.6905 -2.3002 0.9847 31 1 2.4483 -1.0888 3.9070 32 1 3.9016 -1.6021 3.0167 33 1 3.7966 -0.7611 5.9216 34 1 5.2505 -1.2743 5.0321 35 1 4.8483 1.5169 6.2078 36 1 6.9727 0.1574 4.5544 37 1 6.5548 1.8962 4.6624 38 1 7.7335 2.1615 6.7500 39 1 8.7990 1.0145 5.8759 40 1 7.8771 0.3320 8.3145 41 1 7.8604 -0.8943 7.0099 42 1 5.5702 0.6640 8.2016 43 1 5.5760 -0.9773 7.4970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455434047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:42 Heat of formation + Delta-G solvation = -97.119434 kcal Electronic energy + Delta-G solvation = -20928.736278 eV Core-core repulsion = 17780.509705 eV Total energy + Delta-G solvation = -3148.226573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31613 -38.57780 -36.76346 -35.19024 -32.86885 -30.72073 -29.66724 -28.80406 -27.06357 -26.05626 -25.18251 -24.25428 -21.17242 -20.79857 -19.80337 -18.33226 -17.06951 -16.54971 -16.20418 -15.72100 -15.68321 -15.13001 -15.02219 -14.36661 -14.18826 -13.51943 -13.42129 -13.02540 -12.62336 -12.45954 -12.00451 -11.84649 -11.55829 -11.43446 -11.39893 -11.27453 -11.12538 -11.03667 -10.85161 -10.81134 -10.72932 -10.66679 -10.50616 -10.22538 -10.15302 -9.53941 -9.16650 -8.84720 -8.40680 -7.58154 -6.05845 -4.13870 3.28175 3.30783 3.35063 3.39333 3.40685 4.23998 4.41801 4.48265 4.49215 4.70913 5.07261 5.12045 5.23782 5.27779 5.28984 5.33180 5.34678 5.44538 5.49588 5.51282 5.61777 5.64976 5.70758 5.73612 5.89067 5.95915 6.04334 6.13703 6.23342 6.27457 6.33036 6.76798 6.82574 7.05853 7.18873 7.47398 7.55095 7.72743 8.03652 8.20770 8.52921 8.85440 9.08215 9.52601 10.99546 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031344 B = 0.003477 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.096462 B = 8050.645085 C = 8354.198665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.594 5.594 13 C 0.085 3.915 14 C 0.504 3.496 15 O -0.532 6.532 16 C 0.046 3.954 17 O -0.360 6.360 18 C 0.067 3.933 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.118 4.118 24 H 0.030 0.970 25 H 0.012 0.988 26 H 0.094 0.906 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 -5.825 17.881 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.328 5.328 13 C -0.059 4.059 14 C 0.289 3.711 15 O -0.409 6.409 16 C -0.034 4.034 17 O -0.278 6.278 18 C -0.010 4.010 19 C -0.110 4.110 20 C -0.152 4.152 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.155 4.155 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.389 -4.892 17.564 19.672 hybrid contribution 0.148 -0.986 -0.818 1.290 sum 7.537 -5.878 16.746 19.282 Atomic orbital electron populations 1.22099 0.98183 0.99355 1.00925 1.18947 0.90853 0.94573 0.79730 0.91842 1.21323 1.31806 1.13007 0.90294 0.92278 1.24902 0.94946 0.95006 0.98976 1.69882 1.36332 1.22650 1.23754 0.86482 0.78665 0.79822 0.82328 1.20591 1.19939 1.21128 1.48200 1.49252 1.11689 1.23617 1.21578 1.01886 0.83282 0.99129 1.20004 0.79726 0.87340 0.83992 1.90672 1.57170 1.16813 1.76215 1.22326 0.95283 0.92974 0.92779 1.88036 1.68104 1.37004 1.34648 1.22692 0.96229 0.95773 0.86350 1.21748 0.96592 0.98558 0.94068 1.22377 0.93362 1.02334 0.97126 1.22546 0.98758 0.98702 0.96507 1.22359 0.95474 0.99220 0.99156 1.22133 0.95820 1.01035 0.96530 0.95084 0.96921 0.88731 0.92676 0.93197 0.93174 0.90636 0.91152 0.91019 0.93583 0.93386 0.90070 0.91468 0.91045 0.91604 0.91690 0.91856 0.91706 0.91502 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.95 37.16 0.33 -3.22 16 2 C 0.26 6.74 2.64 -69.09 -0.18 6.56 16 3 H 0.06 1.93 6.90 -51.92 -0.36 1.57 16 4 C -0.53 -14.40 8.37 -34.44 -0.29 -14.69 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.59 -12.95 2.75 -175.27 -0.48 -13.43 16 13 C 0.09 1.41 9.48 59.85 0.57 1.98 16 14 C 0.50 11.01 7.75 -10.98 -0.09 10.92 16 15 O -0.53 -14.16 15.83 -14.35 -0.23 -14.39 16 16 C 0.05 0.74 4.97 36.01 0.18 0.92 16 17 O -0.36 -6.07 9.71 -55.14 -0.54 -6.61 16 18 C 0.07 0.80 4.98 37.16 0.19 0.98 16 19 C -0.09 -1.00 3.19 -89.50 -0.29 -1.29 16 20 C -0.11 -1.31 6.22 -25.03 -0.16 -1.47 16 21 C -0.13 -1.15 6.91 -24.70 -0.17 -1.32 16 22 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 23 C -0.12 -0.99 6.46 -25.61 -0.17 -1.15 16 24 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 30 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 31 H 0.07 0.93 7.40 -51.93 -0.38 0.54 16 32 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 33 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.05 0.52 8.02 -51.93 -0.42 0.10 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.80 7.77 -51.93 -0.40 0.40 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -32.44 341.36 -8.30 -40.74 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.48 Total: -1.61 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.33 Total: -1.25 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.14 Total: -38.20 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.76 Total: -20.99 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.44 -8.30 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455434047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.380 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds