Wall clock time and date at job start Mon Mar 30 2020 00:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 O 1.42903 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.42898 * 113.99905 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47333 * 179.97438 * 18 17 16 20 20 C 1.54272 * 110.03209 * 292.90629 * 19 18 17 21 21 C 1.54960 * 104.16076 * 217.13104 * 20 19 18 22 22 C 1.54893 * 102.77431 * 37.89127 * 21 20 19 23 23 C 1.53869 * 110.03482 * 175.68783 * 19 18 17 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 29 29 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 30 30 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 31 31 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 32 32 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 33 33 H 1.09008 * 109.46868 * 299.99489 * 18 17 16 34 34 H 1.09000 * 109.47650 * 59.99613 * 18 17 16 35 35 H 1.09002 * 110.01646 * 54.29493 * 19 18 17 36 36 H 1.08998 * 110.48424 * 335.78410 * 20 19 18 37 37 H 1.09002 * 110.48509 * 98.42296 * 20 19 18 38 38 H 1.08994 * 110.72321 * 279.57534 * 21 20 19 39 39 H 1.08999 * 110.92338 * 156.29093 * 21 20 19 40 40 H 1.09004 * 110.48627 * 203.40499 * 22 21 20 41 41 H 1.09001 * 110.60412 * 80.81353 * 22 21 20 42 42 H 1.09001 * 110.03207 * 238.56664 * 23 19 18 43 43 H 1.09000 * 110.03442 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 8 4.0892 0.1526 4.0918 18 6 4.6171 -0.4249 5.2876 19 6 5.4452 0.6211 6.0365 20 6 6.7084 0.9751 5.2248 21 6 7.8071 1.1717 6.2997 22 6 7.4727 0.0706 7.3366 23 6 5.9308 0.0466 7.3788 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 2.4158 -2.7376 0.9718 29 1 1.6238 -2.2851 2.5003 30 1 0.6905 -2.3002 0.9847 31 1 2.4483 -1.0888 3.9070 32 1 3.9016 -1.6021 3.0167 33 1 3.7966 -0.7611 5.9216 34 1 5.2505 -1.2743 5.0321 35 1 4.8483 1.5169 6.2078 36 1 6.9727 0.1574 4.5544 37 1 6.5548 1.8962 4.6624 38 1 7.7335 2.1615 6.7500 39 1 8.7990 1.0145 5.8759 40 1 7.8771 0.3320 8.3145 41 1 7.8604 -0.8943 7.0099 42 1 5.5702 0.6640 8.2016 43 1 5.5760 -0.9773 7.4970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455434047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:41 Heat of formation + Delta-G solvation = -116.544526 kcal Electronic energy + Delta-G solvation = -20929.578613 eV Core-core repulsion = 17780.509705 eV Total energy + Delta-G solvation = -3149.068908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85083 -39.60987 -37.90556 -37.00888 -34.83691 -32.00055 -31.16661 -29.56221 -28.40211 -27.57342 -27.25910 -25.16269 -22.99697 -21.53719 -20.69593 -19.96133 -18.57019 -18.28884 -17.41721 -17.26099 -17.02117 -16.51414 -16.14218 -15.79953 -15.60195 -14.80717 -14.56698 -14.27017 -14.18787 -13.87885 -13.49379 -13.32794 -13.10066 -12.93369 -12.76236 -12.69736 -12.60350 -12.18352 -12.13233 -12.09697 -11.96308 -11.89934 -11.68094 -11.48196 -11.30590 -11.19503 -10.65370 -10.60109 -10.46563 -9.36006 -8.15354 -6.32480 1.40967 1.42764 1.52579 1.73967 2.00711 2.41795 3.01124 3.12547 3.68366 3.71548 3.75678 3.92824 4.11164 4.25815 4.37724 4.42752 4.46974 4.52118 4.58092 4.69124 4.69585 4.76715 4.79589 4.86484 4.87965 4.92397 5.02856 5.06361 5.08242 5.10582 5.25898 5.36269 5.44604 5.47915 5.49298 5.59743 5.65768 6.00588 6.14854 6.21410 6.75608 6.80506 7.30719 7.46521 8.89258 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031344 B = 0.003477 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.096462 B = 8050.645085 C = 8354.198665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.004 0.996 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.283 1.283 10 H -0.259 1.259 11 H -0.280 1.280 12 N -0.599 5.599 13 C 0.079 3.921 14 C 0.489 3.511 15 O -0.597 6.597 16 C 0.060 3.940 17 O -0.399 6.399 18 C 0.062 3.938 19 C -0.095 4.095 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.111 4.111 24 H 0.052 0.948 25 H 0.020 0.980 26 H 0.067 0.933 27 H 0.265 0.735 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.797 -8.907 19.573 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.022 0.978 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.210 1.210 10 H -0.183 1.183 11 H -0.205 1.205 12 N -0.331 5.331 13 C -0.063 4.063 14 C 0.277 3.723 15 O -0.479 6.479 16 C -0.019 4.019 17 O -0.318 6.318 18 C -0.014 4.014 19 C -0.113 4.113 20 C -0.158 4.158 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.873 -8.031 19.287 22.327 hybrid contribution 0.009 0.023 -1.317 1.317 sum 7.881 -8.009 17.971 21.195 Atomic orbital electron populations 1.21878 0.96889 1.00359 0.99978 1.18545 0.91801 0.92092 0.81693 0.97816 1.21592 1.31959 1.13136 0.91099 0.91935 1.25786 0.95046 0.95674 1.02164 1.70034 1.37304 1.23989 1.24466 0.85421 0.77713 0.79278 0.78388 1.20952 1.18291 1.20488 1.48214 1.48988 1.13684 1.22259 1.21903 1.01923 0.79951 1.02521 1.21179 0.78739 0.86889 0.85455 1.90635 1.59442 1.19890 1.77898 1.22261 0.97023 0.92205 0.90423 1.88010 1.68647 1.38657 1.36489 1.22961 0.97214 0.96230 0.84985 1.21807 0.95926 0.98134 0.95456 1.22384 0.95052 1.00672 0.97710 1.22539 0.98090 0.99511 0.96144 1.22364 0.95163 0.98892 0.99392 1.22113 0.96063 1.01859 0.94821 0.92910 0.96132 0.91389 0.92619 0.92268 0.88334 0.90793 0.87280 0.88048 0.91278 0.91743 0.91803 0.92195 0.93871 0.91490 0.91147 0.90296 0.91057 0.90660 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.95 71.98 0.64 -5.85 16 2 C 0.26 13.98 2.64 44.24 0.12 14.10 16 3 H 0.00 0.25 6.90 -2.38 -0.02 0.23 16 4 C -0.54 -29.87 8.37 25.60 0.21 -29.66 16 5 H 0.06 3.33 7.65 -2.91 -0.02 3.31 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -54.04 11.32 21.45 0.24 -53.80 16 8 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 N -0.60 -25.88 2.75 -826.81 -2.28 -28.15 16 13 C 0.08 2.37 9.48 127.77 1.21 3.59 16 14 C 0.49 21.46 7.75 87.66 0.68 22.14 16 15 O -0.60 -33.49 15.83 16.01 0.25 -33.24 16 16 C 0.06 1.77 4.97 71.24 0.35 2.13 16 17 O -0.40 -13.08 9.71 -129.94 -1.26 -14.34 16 18 C 0.06 1.34 4.98 71.98 0.36 1.70 16 19 C -0.09 -1.99 3.19 -10.07 -0.03 -2.02 16 20 C -0.12 -2.78 6.22 31.70 0.20 -2.59 16 21 C -0.13 -2.14 6.91 31.91 0.22 -1.92 16 22 C -0.12 -1.59 6.83 31.67 0.22 -1.38 16 23 C -0.11 -1.57 6.46 31.32 0.20 -1.36 16 24 H 0.05 2.30 6.66 -2.39 -0.02 2.28 16 25 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.10 2.01 6.44 -2.38 -0.02 1.99 16 30 H 0.07 2.25 6.43 -2.39 -0.02 2.24 16 31 H 0.11 2.37 7.40 -2.38 -0.02 2.36 16 32 H 0.10 2.40 8.11 -2.39 -0.02 2.38 16 33 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.06 1.18 8.02 -2.39 -0.02 1.16 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.44 7.77 -2.39 -0.02 1.42 16 37 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 0.91 7.67 -2.39 -0.02 0.89 16 Total: -1.00 -75.52 341.36 4.78 -70.74 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.96 Total: 13.24 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 4.83 Total: 0.03 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.03 Total: -81.95 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -1.01 Total: -47.58 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -75.52 4.78 -70.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455434047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.808 kcal (2) G-P(sol) polarization free energy of solvation -75.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds