Wall clock time and date at job start Mon Mar 30 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37875 * 120.00133 * 294.36950 * 4 2 1 7 7 N 1.31516 * 120.00510 * 156.90156 * 6 4 2 8 8 Si 1.86810 * 119.99756 * 337.17312 * 6 4 2 9 9 H 1.48501 * 109.47061 * 179.72434 * 8 6 4 10 10 H 1.48495 * 109.46894 * 299.72787 * 8 6 4 11 11 H 1.48496 * 109.46696 * 59.72479 * 8 6 4 12 12 N 1.46503 * 109.46749 * 240.00646 * 2 1 3 13 13 C 1.46505 * 120.00016 * 299.99254 * 12 2 1 14 14 C 1.34773 * 120.00310 * 119.99959 * 12 2 1 15 15 O 1.21276 * 119.99959 * 359.97438 * 14 12 2 16 16 C 1.50704 * 120.00250 * 179.97438 * 14 12 2 17 17 O 1.42897 * 109.46940 * 180.02562 * 16 14 12 18 18 C 1.42907 * 113.99824 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47152 * 180.02562 * 18 17 16 20 20 C 1.54269 * 110.02882 * 292.90744 * 19 18 17 21 21 C 1.54963 * 104.15938 * 217.13642 * 20 19 18 22 22 C 1.54894 * 102.77760 * 37.89129 * 21 20 19 23 23 C 1.53876 * 110.03308 * 175.69295 * 19 18 17 24 24 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 25 25 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 26 26 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 27 27 H 0.96989 * 119.99527 * 355.20009 * 7 6 4 28 28 H 1.09007 * 109.46817 * 90.00493 * 13 12 2 29 29 H 1.08992 * 109.47593 * 210.00355 * 13 12 2 30 30 H 1.08998 * 109.47142 * 330.00868 * 13 12 2 31 31 H 1.08998 * 109.47200 * 300.00174 * 16 14 12 32 32 H 1.09003 * 109.46884 * 60.00320 * 16 14 12 33 33 H 1.09000 * 109.46758 * 300.00018 * 18 17 16 34 34 H 1.09001 * 109.46806 * 59.99859 * 18 17 16 35 35 H 1.08995 * 110.01736 * 54.29885 * 19 18 17 36 36 H 1.09003 * 110.49008 * 335.78139 * 20 19 18 37 37 H 1.09003 * 110.48940 * 98.43190 * 20 19 18 38 38 H 1.08997 * 110.72027 * 279.57518 * 21 20 19 39 39 H 1.08998 * 110.92494 * 156.29391 * 21 20 19 40 40 H 1.09000 * 110.48581 * 203.41051 * 22 21 20 41 41 H 1.08996 * 110.60154 * 80.81718 * 22 21 20 42 42 H 1.08995 * 110.02823 * 238.56890 * 23 19 18 43 43 H 1.09007 * 110.02966 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7976 -0.1758 2.4793 7 7 1.8082 -0.9532 3.5401 8 14 1.4571 1.6517 2.6640 9 1 1.2325 1.9710 4.0968 10 1 2.6206 2.4252 2.1609 11 1 0.2477 2.0114 1.8811 12 7 2.0182 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0834 15 8 3.0857 1.1257 -1.8917 16 6 3.2957 -0.7460 -3.3138 17 8 4.0900 0.1521 -4.0913 18 6 4.6180 -0.4253 -5.2871 19 6 5.4473 0.6203 -6.0353 20 6 4.5311 1.7460 -6.5582 21 6 5.1355 2.1175 -7.9359 22 6 5.5736 0.7429 -8.4997 23 6 6.1102 -0.0170 -7.2691 24 1 -0.3634 0.4065 0.9439 25 1 -0.3634 0.6142 -0.8239 26 1 -0.3634 -1.0206 -0.1200 27 1 1.9116 -1.9121 3.4375 28 1 0.7374 -2.1443 -1.9995 29 1 2.4627 -2.5818 -1.9866 30 1 1.5295 -2.5968 -0.4710 31 1 3.9014 -1.6022 -3.0169 32 1 2.4481 -1.0888 -3.9072 33 1 5.2506 -1.2753 -5.0315 34 1 3.7975 -0.7608 -5.9215 35 1 6.2086 1.0351 -5.3748 36 1 3.5098 1.3833 -6.6752 37 1 4.5579 2.6032 -5.8854 38 1 5.9947 2.7770 -7.8149 39 1 4.3850 2.5772 -8.5790 40 1 6.3606 0.8688 -9.2432 41 1 4.7225 0.2166 -8.9318 42 1 7.1932 0.0892 -7.2076 43 1 5.8415 -1.0714 -7.3345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455434048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:43 Heat of formation + Delta-G solvation = -97.646250 kcal Electronic energy + Delta-G solvation = -20990.062170 eV Core-core repulsion = 17841.812753 eV Total energy + Delta-G solvation = -3148.249417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.44275 -38.67012 -36.85446 -35.35048 -32.87711 -30.90770 -30.20248 -28.86130 -27.26479 -26.19593 -24.75609 -24.30251 -21.11679 -20.83912 -19.84304 -18.36386 -17.53443 -17.12898 -16.24995 -16.04023 -15.79046 -15.18633 -14.97166 -14.52088 -13.89792 -13.53448 -13.39760 -13.18253 -12.69092 -12.61073 -12.18965 -11.98547 -11.86315 -11.66310 -11.49061 -11.40552 -11.31145 -11.24498 -11.17817 -10.88227 -10.76585 -10.55911 -10.48255 -10.07029 -9.77028 -9.61215 -9.15337 -8.99314 -8.30210 -7.78239 -6.51142 -4.13397 3.22305 3.26169 3.42074 3.51505 3.66414 4.15110 4.42977 4.44226 4.48786 4.64586 4.98215 5.05784 5.15245 5.21201 5.23037 5.27854 5.28297 5.34530 5.43793 5.46794 5.56298 5.60634 5.63405 5.69150 5.84255 5.88375 5.90788 6.09397 6.16497 6.24564 6.27519 6.34874 6.43935 6.60533 6.95201 7.04521 7.24143 7.46829 7.85537 8.28418 8.33544 8.76929 8.95319 9.51697 10.84188 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034841 B = 0.003590 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.457223 B = 7796.803538 C = 8098.851247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.237 3.763 3 H 0.055 0.945 4 C -0.618 4.618 5 H 0.062 0.938 6 C 0.044 3.956 7 N -0.894 5.894 8 Si 1.031 2.969 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.275 1.275 12 N -0.588 5.588 13 C 0.083 3.917 14 C 0.505 3.495 15 O -0.533 6.533 16 C 0.048 3.952 17 O -0.360 6.360 18 C 0.067 3.933 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.118 4.118 24 H 0.062 0.938 25 H 0.026 0.974 26 H 0.046 0.954 27 H 0.269 0.731 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -1.450 -21.848 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 H 0.072 0.928 4 C -0.656 4.656 5 H 0.080 0.920 6 C -0.163 4.163 7 N -0.526 5.526 8 Si 0.858 3.142 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.201 1.201 12 N -0.321 5.321 13 C -0.061 4.061 14 C 0.291 3.709 15 O -0.410 6.410 16 C -0.032 4.032 17 O -0.278 6.278 18 C -0.010 4.010 19 C -0.110 4.110 20 C -0.152 4.152 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.155 4.155 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.800 0.533 -20.533 20.889 hybrid contribution 0.220 -1.850 -1.163 2.196 sum 4.020 -1.317 -21.696 22.104 Atomic orbital electron populations 1.22423 0.98609 1.00130 1.00172 1.19170 0.90360 0.94747 0.82188 0.92759 1.22100 1.41409 1.11148 0.90943 0.91983 1.25630 0.93155 1.05735 0.91797 1.70872 1.43622 1.06347 1.31797 0.84228 0.77767 0.76047 0.76143 1.20903 1.20422 1.20140 1.47926 1.49448 1.11724 1.23021 1.21643 0.98808 0.82968 1.02706 1.20048 0.79617 0.87314 0.83950 1.90663 1.57225 1.16865 1.76232 1.22289 0.95470 0.92934 0.92555 1.88032 1.68087 1.37038 1.34659 1.22703 0.96388 0.95699 0.86248 1.21753 0.97665 0.95573 0.96011 1.22374 0.98671 0.98288 0.95822 1.22547 1.00436 0.96824 0.96707 1.22357 1.00487 0.96219 0.97137 1.22136 1.00115 0.99547 0.93746 0.91908 0.95538 0.93504 0.92096 0.93649 0.92781 0.89765 0.90886 0.91040 0.93476 0.93377 0.90007 0.91541 0.91083 0.91571 0.91698 0.91814 0.91715 0.91443 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.01 37.16 0.33 -3.08 16 2 C 0.24 5.86 2.23 -69.09 -0.15 5.71 16 3 H 0.05 1.48 5.48 -51.93 -0.28 1.20 16 4 C -0.62 -17.16 8.30 -34.45 -0.29 -17.44 16 5 H 0.06 1.82 7.38 -52.48 -0.39 1.43 16 6 C 0.04 1.25 5.20 -17.82 -0.09 1.16 16 7 N -0.89 -26.86 13.70 55.43 0.76 -26.10 16 8 Si 1.03 25.65 26.44 -169.99 -4.49 21.16 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.35 6.12 56.52 0.35 -6.00 16 12 N -0.59 -12.50 2.75 -175.26 -0.48 -12.98 16 13 C 0.08 1.35 9.10 59.85 0.54 1.90 16 14 C 0.51 10.72 7.75 -10.99 -0.09 10.63 16 15 O -0.53 -13.67 15.83 -14.35 -0.23 -13.90 16 16 C 0.05 0.74 4.97 36.01 0.18 0.92 16 17 O -0.36 -5.92 9.71 -55.14 -0.54 -6.46 16 18 C 0.07 0.78 4.98 37.16 0.19 0.96 16 19 C -0.09 -0.98 3.19 -89.50 -0.29 -1.27 16 20 C -0.11 -1.24 6.21 -25.03 -0.16 -1.39 16 21 C -0.13 -1.09 6.91 -24.70 -0.17 -1.26 16 22 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 23 C -0.12 -0.97 6.46 -25.61 -0.17 -1.13 16 24 H 0.06 1.43 5.44 -51.93 -0.28 1.15 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.95 7.46 -51.93 -0.39 0.57 16 27 H 0.27 7.97 8.73 -40.82 -0.36 7.62 16 28 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 29 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 30 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 31 H 0.07 0.99 7.40 -51.93 -0.38 0.61 16 32 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.49 8.02 -51.93 -0.42 0.08 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.48 7.67 -51.92 -0.40 0.08 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -33.21 338.14 -7.70 -40.91 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.49 Total: -2.31 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.32 Total: -5.41 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.28 Total: -39.09 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.76 Total: -20.35 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -4.49 Total: 21.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.21 -7.70 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455434048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.741 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds