Wall clock time and date at job start Mon Mar 30 2020 01:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.47039 * 2 1 4 4 C 1.42895 * 113.99556 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47411 * 29.99900 * 4 3 2 6 6 C 1.52999 * 109.47485 * 269.99454 * 4 3 2 7 7 C 1.52997 * 109.47592 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47165 * 60.00300 * 7 6 4 9 9 C 1.53002 * 109.46972 * 300.00293 * 8 7 6 10 10 C 1.52997 * 109.47415 * 59.99860 * 9 8 7 11 11 H 1.09000 * 109.47140 * 59.99976 * 10 9 8 12 12 N 1.46500 * 109.47204 * 180.02562 * 10 9 8 13 13 C 1.34775 * 120.00366 * 274.99782 * 12 10 9 14 14 O 1.21282 * 119.99750 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00244 * 180.02562 * 13 12 10 16 16 C 1.53004 * 109.46887 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46887 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00174 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00118 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99583 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99919 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47001 * 90.00404 * 21 19 17 23 23 H 1.48500 * 109.46742 * 209.99818 * 21 19 17 24 24 H 1.48496 * 109.47210 * 329.99776 * 21 19 17 25 25 H 1.08997 * 109.47035 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47131 * 300.00897 * 1 2 3 27 27 H 1.09001 * 109.46628 * 60.00221 * 1 2 3 28 28 H 1.08991 * 109.47513 * 239.99033 * 2 1 3 29 29 H 1.09008 * 109.46760 * 119.99389 * 2 1 3 30 30 H 1.09000 * 109.47160 * 300.00600 * 6 4 3 31 31 H 1.09002 * 109.46719 * 60.00320 * 6 4 3 32 32 H 1.09000 * 109.47140 * 300.00346 * 7 6 4 33 33 H 1.09001 * 109.47375 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.47534 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47134 * 59.99508 * 8 7 6 36 36 H 1.09000 * 109.46986 * 299.99742 * 9 8 7 37 37 H 1.09001 * 109.47601 * 180.02562 * 9 8 7 38 38 H 0.97001 * 119.99882 * 94.99976 * 12 10 9 39 39 H 1.08996 * 109.46708 * 300.00131 * 15 13 12 40 40 H 1.09001 * 109.46991 * 60.00072 * 15 13 12 41 41 H 1.08999 * 109.46835 * 299.99964 * 16 15 13 42 42 H 1.09000 * 109.46654 * 60.00342 * 16 15 13 43 43 H 0.96996 * 119.99836 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5129 6 6 3.9388 1.5007 1.4432 7 6 5.4639 1.6220 1.4439 8 6 5.8735 2.9077 0.7228 9 6 5.3657 2.8672 -0.7199 10 6 3.8405 2.7458 -0.7206 11 1 3.4075 3.6042 -0.2070 12 7 3.3544 2.7064 -2.1020 13 6 3.1341 3.8549 -2.7719 14 8 3.3388 4.9211 -2.2313 15 6 2.6334 3.8144 -4.1928 16 6 2.4690 5.2426 -4.7165 17 6 1.9678 5.2020 -6.1371 18 1 1.7851 4.2526 -6.6184 19 6 1.7433 6.3770 -6.8228 20 7 1.9662 7.5331 -6.2368 21 14 1.1227 6.3266 -8.5839 22 1 -0.3623 6.3324 -8.5858 23 1 1.6231 7.5158 -9.3192 24 1 1.6138 5.0919 -9.2468 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.5061 2.3593 1.9567 31 1 3.6466 0.5849 1.9571 32 1 5.8969 0.7636 0.9303 33 1 5.8257 1.6505 2.4717 34 1 6.9600 2.9940 0.7228 35 1 5.4405 3.7661 1.2363 36 1 5.7987 2.0088 -1.2335 37 1 5.6578 3.7829 -1.2339 38 1 3.1910 1.8537 -2.5345 39 1 3.3505 3.2796 -4.8155 40 1 1.6717 3.3023 -4.2246 41 1 1.7521 5.7776 -4.0937 42 1 3.4310 5.7541 -4.6847 43 1 1.8080 8.3597 -6.7190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456927803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:56 Heat of formation + Delta-G solvation = -143.917274 kcal Electronic energy + Delta-G solvation = -21126.179796 eV Core-core repulsion = 17975.923916 eV Total energy + Delta-G solvation = -3150.255879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21599 -39.73893 -37.60009 -35.58539 -35.14560 -33.03231 -32.38449 -30.88254 -29.74292 -27.53714 -24.35221 -23.94043 -23.19205 -22.67014 -21.35744 -20.71123 -18.82998 -18.02777 -17.37521 -17.32832 -16.50892 -16.46102 -16.39619 -15.73293 -15.16521 -14.81654 -14.59766 -14.44251 -14.30108 -14.22090 -13.86893 -13.65698 -13.23326 -13.12369 -12.82178 -12.67990 -12.47685 -12.42416 -12.24893 -11.93245 -11.91276 -11.72817 -11.63322 -11.60688 -11.31268 -11.29896 -10.78015 -10.57197 -10.36111 -9.98381 -8.17842 -6.32333 1.41826 1.45131 1.56054 1.74293 2.24025 2.44986 2.64040 3.14939 3.61285 3.86351 3.97740 4.06179 4.11514 4.16191 4.18866 4.25812 4.37586 4.42120 4.46070 4.52320 4.53832 4.55684 4.76612 4.83007 4.90962 4.99757 5.05402 5.08514 5.12844 5.13546 5.22207 5.28805 5.31676 5.44218 5.48287 5.58954 5.62654 5.85219 6.17576 6.34524 6.63107 6.86003 7.37109 7.39196 8.95060 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022569 B = 0.003915 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.335025 B = 7150.992507 C = 8080.199731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.405 6.405 4 C 0.092 3.908 5 H 0.089 0.911 6 C -0.135 4.135 7 C -0.110 4.110 8 C -0.118 4.118 9 C -0.123 4.123 10 C 0.147 3.853 11 H 0.052 0.948 12 N -0.710 5.710 13 C 0.512 3.488 14 O -0.590 6.590 15 C -0.118 4.118 16 C 0.043 3.957 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.976 3.024 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.254 1.254 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.412 0.588 39 H 0.105 0.895 40 H 0.100 0.900 41 H -0.021 1.021 42 H -0.018 1.018 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -21.949 15.212 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.325 6.325 4 C 0.034 3.966 5 H 0.107 0.893 6 C -0.173 4.173 7 C -0.147 4.147 8 C -0.156 4.156 9 C -0.162 4.162 10 C 0.042 3.958 11 H 0.071 0.929 12 N -0.361 5.361 13 C 0.301 3.699 14 O -0.470 6.470 15 C -0.158 4.158 16 C 0.005 3.995 17 C -0.582 4.582 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.178 1.178 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.249 0.751 39 H 0.123 0.877 40 H 0.118 0.882 41 H -0.003 1.003 42 H 0.001 0.999 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.830 -20.875 15.577 26.491 hybrid contribution -0.380 0.463 -0.922 1.100 sum 4.451 -20.412 14.655 25.519 Atomic orbital electron populations 1.21776 0.93830 1.03201 1.02183 1.22710 0.95728 0.82817 1.01250 1.88007 1.21065 1.28208 1.95197 1.22359 0.81348 0.96406 0.96521 0.89279 1.21999 0.96882 1.03176 0.95246 1.21503 0.93964 0.97543 1.01699 1.21542 1.01555 0.98753 0.93767 1.21872 0.93361 1.02216 0.98741 1.21080 0.94590 0.98337 0.81823 0.92944 1.45837 1.67735 1.08441 1.14127 1.21311 0.75842 0.83508 0.89274 1.90642 1.53557 1.32015 1.70826 1.21624 1.02899 1.00482 0.90788 1.18676 0.94648 0.91333 0.94798 1.21715 1.44388 0.93415 0.98635 0.90586 1.26164 0.95663 0.94966 1.03677 1.70189 1.49928 0.98272 1.39459 0.85293 0.78527 0.78168 0.78082 1.19721 1.21096 1.17790 0.88924 0.92755 0.93221 0.92067 0.91834 0.92530 0.89498 0.89998 0.89869 0.90040 0.93059 0.89556 0.94048 0.75129 0.87697 0.88169 1.00260 0.99922 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.05 0.79 6.47 71.98 0.47 1.25 16 3 O -0.40 -9.30 9.85 -148.98 -1.47 -10.77 16 4 C 0.09 1.77 2.13 30.60 0.07 1.83 16 5 H 0.09 1.26 7.79 -2.39 -0.02 1.24 16 6 C -0.13 -2.11 5.54 30.59 0.17 -1.94 16 7 C -0.11 -1.40 5.92 30.59 0.18 -1.22 16 8 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 9 C -0.12 -2.90 5.49 30.59 0.17 -2.73 16 10 C 0.15 3.97 2.15 44.99 0.10 4.06 16 11 H 0.05 1.85 7.58 -2.39 -0.02 1.84 16 12 N -0.71 -21.12 4.94 -442.53 -2.19 -23.30 16 13 C 0.51 21.27 7.79 87.66 0.68 21.96 16 14 O -0.59 -30.86 15.65 -3.04 -0.05 -30.91 16 15 C -0.12 -5.01 5.64 29.85 0.17 -4.84 16 16 C 0.04 2.50 4.26 29.85 0.13 2.63 16 17 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 18 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 20 N -0.94 -60.86 13.29 21.45 0.28 -60.57 16 21 Si 0.98 45.05 29.54 68.60 2.03 47.08 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.25 -10.84 7.11 99.48 0.71 -10.14 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.78 8.08 -2.39 -0.02 0.76 16 29 H 0.06 0.75 7.87 -2.38 -0.02 0.73 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.04 7.87 -2.39 -0.02 1.02 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.41 9.29 8.60 -92.71 -0.80 8.50 16 39 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 40 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 41 H -0.02 -1.39 8.10 -2.39 -0.02 -1.40 16 42 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 43 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -80.06 348.49 2.52 -77.55 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.16 Total: 15.06 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 3.74 Total: -14.13 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -1.90 Total: -83.88 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.51 Total: -41.67 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -80.06 2.52 -77.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456927803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.372 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds