Wall clock time and date at job start Mon Mar 30 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46507 * 2 1 4 4 C 1.46500 * 120.00341 * 281.30538 * 3 2 1 5 5 C 1.50695 * 109.47102 * 90.00528 * 4 3 2 6 6 H 1.07999 * 120.00201 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00050 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00325 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99962 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47174 * 90.00308 * 9 7 5 11 11 H 1.48506 * 109.46873 * 210.00489 * 9 7 5 12 12 H 1.48505 * 109.46820 * 330.00215 * 9 7 5 13 13 C 1.34777 * 119.99921 * 101.30988 * 3 2 1 14 14 O 1.21279 * 120.00238 * 186.80927 * 13 3 2 15 15 C 1.50697 * 119.99963 * 6.81011 * 13 3 2 16 16 C 1.53005 * 110.43749 * 70.34467 * 15 13 3 17 17 O 1.42904 * 109.47177 * 304.68034 * 16 15 13 18 18 C 1.42895 * 113.99954 * 179.97438 * 17 16 15 19 19 C 1.54889 * 110.48599 * 307.66474 * 15 13 3 20 20 C 1.54889 * 102.74855 * 279.26286 * 19 15 13 21 21 C 1.54269 * 104.19600 * 322.05840 * 20 19 15 22 22 C 1.53872 * 106.59816 * 23.60756 * 21 20 19 23 23 H 1.09000 * 109.47140 * 305.14331 * 1 2 3 24 24 H 1.09002 * 109.47506 * 65.15267 * 1 2 3 25 25 H 1.09006 * 109.46779 * 185.14548 * 1 2 3 26 26 H 1.08995 * 109.47111 * 119.99886 * 2 1 3 27 27 H 1.08997 * 109.47009 * 240.00608 * 2 1 3 28 28 H 1.09001 * 109.47098 * 210.00943 * 4 3 2 29 29 H 1.09001 * 109.46733 * 330.00537 * 4 3 2 30 30 H 0.97000 * 120.00871 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.46830 * 64.68019 * 16 15 13 32 32 H 1.09001 * 109.47243 * 184.67254 * 16 15 13 33 33 H 1.09004 * 109.46965 * 59.99539 * 18 17 16 34 34 H 1.08998 * 109.46979 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47321 * 300.00286 * 18 17 16 36 36 H 1.08999 * 110.75609 * 37.57734 * 19 15 13 37 37 H 1.08998 * 110.75565 * 160.94864 * 19 15 13 38 38 H 1.09002 * 110.48891 * 203.37630 * 20 19 15 39 39 H 1.09002 * 110.48626 * 80.73403 * 20 19 15 40 40 H 1.09002 * 110.03418 * 264.32542 * 21 20 19 41 41 H 1.08996 * 110.03162 * 142.89263 * 21 20 19 42 42 H 1.08997 * 110.03392 * 240.71460 * 22 21 20 43 43 H 1.08997 * 110.03186 * 119.28576 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.0278 2.1548 -1.2441 5 6 0.7176 2.8844 -1.3920 6 1 -0.0461 2.7818 -0.6353 7 6 0.4934 3.6822 -2.4940 8 7 -0.6502 4.3185 -2.6235 9 14 1.8140 3.8591 -3.8033 10 1 1.6308 2.8083 -4.8364 11 1 1.7080 5.1987 -4.4354 12 1 3.1532 3.7111 -3.1787 13 6 2.4586 1.9403 1.1445 14 8 2.7462 3.1182 1.1727 15 6 2.5937 1.1018 2.3894 16 6 3.7555 0.1165 2.2464 17 8 3.5704 -0.6705 1.0681 18 6 4.6065 -1.6277 0.8398 19 6 1.2726 0.3478 2.6811 20 6 0.4069 1.4299 3.3730 21 6 1.4069 2.2094 4.2518 22 6 2.7972 2.0008 3.6265 23 1 -0.3633 0.5915 0.8403 24 1 -0.3634 0.4318 -0.9325 25 1 -0.3633 -1.0236 0.0922 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 2.8445 2.8763 -1.2170 29 1 2.1661 1.4811 -2.0897 30 1 -0.8079 4.8800 -3.3985 31 1 4.6926 0.6683 2.1713 32 1 3.7874 -0.5366 3.1185 33 1 4.6565 -2.3171 1.6826 34 1 4.3927 -2.1838 -0.0729 35 1 5.5611 -1.1119 0.7353 36 1 0.8057 0.0139 1.7545 37 1 1.4479 -0.4935 3.3516 38 1 -0.3624 0.9659 3.9902 39 1 -0.0439 2.0894 2.6314 40 1 1.3929 1.8191 5.2695 41 1 1.1540 3.2696 4.2545 42 1 3.4579 1.5093 4.3406 43 1 3.2191 2.9598 3.3257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457473861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:46 Heat of formation + Delta-G solvation = -51.897979 kcal Electronic energy + Delta-G solvation = -23079.795025 eV Core-core repulsion = 19933.529402 eV Total energy + Delta-G solvation = -3146.265623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52521 -37.55306 -36.54095 -35.40996 -32.56263 -30.74197 -30.40085 -28.25457 -27.60557 -26.65270 -24.31268 -23.02190 -22.41595 -20.72335 -20.14325 -17.81146 -16.90806 -16.60963 -16.31904 -15.87836 -15.61220 -15.10507 -14.69086 -14.14121 -13.74461 -13.53120 -13.09065 -12.97648 -12.81957 -12.46584 -12.34207 -12.04578 -11.62037 -11.49985 -11.25908 -11.08023 -11.07095 -10.76246 -10.72389 -10.65471 -10.44194 -10.32683 -10.16963 -10.01078 -9.88042 -9.51316 -9.33854 -8.68351 -8.49318 -7.47211 -5.99008 -3.95304 3.32531 3.40467 3.44450 3.45752 3.72311 4.01097 4.48130 4.73925 4.81631 4.87012 5.18631 5.20875 5.30422 5.34341 5.39478 5.41976 5.56622 5.61039 5.64446 5.69429 5.76814 5.88887 5.95740 6.02277 6.10840 6.16195 6.17496 6.23573 6.42472 6.45882 6.51649 6.57292 6.65585 6.83232 7.05652 7.10617 7.15298 7.59028 7.74287 8.50189 8.59901 9.05795 9.19141 9.62854 11.14434 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.007392 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.829868 B = 3786.731314 C = 4285.355698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.095 3.905 3 N -0.578 5.578 4 C 0.217 3.783 5 C -0.516 4.516 6 H 0.077 0.923 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.872 3.128 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.526 3.474 14 O -0.544 6.544 15 C -0.083 4.083 16 C 0.073 3.927 17 O -0.367 6.367 18 C 0.021 3.979 19 C -0.155 4.155 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.106 4.106 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.121 0.879 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 -13.558 11.357 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 N -0.308 5.308 4 C 0.096 3.904 5 C -0.555 4.555 6 H 0.095 0.905 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.700 3.300 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.312 3.688 14 O -0.422 6.422 15 C -0.087 4.087 16 C -0.003 4.003 17 O -0.287 6.287 18 C -0.075 4.075 19 C -0.191 4.191 20 C -0.164 4.164 21 C -0.156 4.156 22 C -0.144 4.144 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.137 0.863 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.346 -12.781 11.092 18.449 hybrid contribution 0.808 0.117 -0.694 1.071 sum 8.155 -12.664 10.399 18.303 Atomic orbital electron populations 1.22440 0.96901 1.00374 1.04138 1.22209 0.93088 0.83558 1.03891 1.47671 1.60808 1.13230 1.09053 1.19604 0.98518 0.91252 0.81028 1.21369 0.99785 1.26955 1.07353 0.90522 1.24861 0.95253 0.95175 0.97922 1.69895 1.23531 1.30897 1.29662 0.86901 0.83239 0.77691 0.82219 1.20274 1.21134 1.18997 1.19803 0.77709 0.87270 0.83984 1.90631 1.51347 1.15957 1.84216 1.21658 0.96090 0.95407 0.95499 1.22491 0.97308 0.92464 0.88065 1.88304 1.44731 1.51363 1.44255 1.22793 0.91418 0.92176 1.01160 1.23648 0.94255 0.97495 1.03707 1.22372 0.97556 0.97596 0.98900 1.22064 0.94514 1.00756 0.98311 1.22057 0.97763 1.00484 0.94081 0.92109 0.90450 0.93120 0.86259 0.92300 0.94771 0.96000 0.92783 0.92901 0.92439 0.94332 0.89669 0.94287 0.86252 0.91315 0.91781 0.91024 0.92231 0.91656 0.91806 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 8.51 37.16 0.32 -2.79 16 2 C 0.10 1.64 3.93 -4.04 -0.02 1.63 16 3 N -0.58 -12.48 2.37 -175.07 -0.41 -12.89 16 4 C 0.22 5.52 4.18 -5.20 -0.02 5.50 16 5 C -0.52 -15.04 8.88 -34.44 -0.31 -15.35 16 6 H 0.08 2.43 7.87 -52.49 -0.41 2.02 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 9 Si 0.87 22.16 27.47 -169.99 -4.67 17.50 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 13 C 0.53 11.22 6.19 -10.99 -0.07 11.15 16 14 O -0.54 -13.92 15.10 5.56 0.08 -13.84 16 15 C -0.08 -1.30 0.54 -154.00 -0.08 -1.38 16 16 C 0.07 0.95 4.73 37.16 0.18 1.12 16 17 O -0.37 -4.87 5.79 -35.23 -0.20 -5.08 16 18 C 0.02 0.20 11.01 101.05 1.11 1.31 16 19 C -0.15 -2.15 4.69 -24.74 -0.12 -2.26 16 20 C -0.13 -1.83 6.36 -25.07 -0.16 -1.99 16 21 C -0.12 -1.62 6.80 -25.61 -0.17 -1.79 16 22 C -0.11 -1.53 5.82 -25.61 -0.15 -1.68 16 23 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 24 H 0.08 1.58 7.42 -51.93 -0.39 1.19 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.12 1.80 2.34 -54.19 -0.13 1.67 16 27 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 28 H 0.03 0.94 6.58 -51.93 -0.34 0.60 16 29 H 0.02 0.53 7.44 -51.93 -0.39 0.15 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.12 1.77 1.70 -51.93 -0.09 1.68 16 37 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 43 H 0.09 1.48 6.77 -51.93 -0.35 1.13 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -34.07 322.48 -6.21 -40.27 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.05 Total: 1.20 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 0.41 Total: -4.56 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.36 Total: -40.35 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.12 Total: -18.91 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.07 -6.21 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457473861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.624 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds