Wall clock time and date at job start Mon Mar 30 2020 01:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.46908 * 2 1 4 4 C 1.42905 * 113.99904 * 184.94825 * 3 2 1 5 5 C 1.52996 * 109.47008 * 184.96957 * 4 3 2 6 6 C 1.50700 * 115.54896 * 294.86142 * 5 4 3 7 7 O 1.21284 * 119.99788 * 124.21683 * 6 5 4 8 8 N 1.34771 * 120.00228 * 304.21341 * 6 5 4 9 9 C 1.46501 * 120.00137 * 175.06732 * 8 6 5 10 10 C 1.53001 * 109.47282 * 185.22745 * 9 8 6 11 11 C 1.52991 * 109.47247 * 295.98166 * 10 9 8 12 12 C 1.53003 * 109.47071 * 55.98200 * 10 9 8 13 13 C 1.50699 * 109.47154 * 175.97832 * 10 9 8 14 14 H 1.08004 * 119.99657 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00444 * 179.97438 * 13 10 9 16 16 N 1.31517 * 119.99309 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00503 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.46890 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47312 * 120.00167 * 17 15 13 20 20 H 1.48498 * 109.46973 * 240.00378 * 17 15 13 21 21 C 1.52994 * 117.50017 * 80.53553 * 5 4 3 22 22 C 1.53002 * 117.49687 * 149.19263 * 5 4 3 23 23 H 1.08995 * 109.46983 * 64.97834 * 1 2 3 24 24 H 1.08991 * 109.46733 * 184.97967 * 1 2 3 25 25 H 1.08998 * 109.46916 * 304.98078 * 1 2 3 26 26 H 1.08999 * 109.47346 * 240.00510 * 2 1 3 27 27 H 1.09002 * 109.47300 * 119.99911 * 2 1 3 28 28 H 1.09000 * 109.46600 * 64.96813 * 4 3 2 29 29 H 1.08998 * 109.47270 * 304.97286 * 4 3 2 30 30 H 0.96997 * 120.00228 * 355.07793 * 8 6 5 31 31 H 1.09005 * 109.47033 * 65.23158 * 9 8 6 32 32 H 1.08998 * 109.47138 * 305.23167 * 9 8 6 33 33 H 1.09001 * 109.47403 * 64.56500 * 11 10 9 34 34 H 1.09000 * 109.47612 * 184.56699 * 11 10 9 35 35 H 1.09009 * 109.47379 * 304.56637 * 11 10 9 36 36 H 1.08997 * 109.46923 * 59.99757 * 12 10 9 37 37 H 1.08992 * 109.46869 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.46650 * 299.99929 * 12 10 9 39 39 H 0.97001 * 119.99728 * 179.97438 * 16 15 13 40 40 H 1.09006 * 117.50125 * 215.00335 * 21 5 4 41 41 H 1.09000 * 117.49817 * 0.02562 * 21 5 4 42 42 H 1.08994 * 117.49957 * 359.97438 * 22 5 4 43 43 H 1.09005 * 117.49385 * 144.97084 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4264 1.4618 -0.1126 5 6 3.8318 2.9309 0.0221 6 6 3.3469 3.8423 -1.0758 7 8 2.6914 4.8255 -0.8024 8 7 3.6417 3.5649 -2.3612 9 6 3.0811 4.3883 -3.4355 10 6 3.4618 3.7877 -4.7902 11 6 4.9811 3.8400 -4.9624 12 6 2.9911 2.3332 -4.8536 13 6 2.8038 4.5770 -5.8924 14 1 2.1771 5.4228 -5.6508 15 6 3.0027 4.2202 -7.2093 16 7 3.7662 3.1906 -7.5034 17 14 2.1876 5.1991 -8.5756 18 1 1.3863 6.3009 -7.9849 19 1 3.2304 5.7686 -9.4664 20 1 1.2988 4.3063 -9.3617 21 6 3.9222 3.5122 1.4344 22 6 5.1993 3.2327 0.6384 23 1 -0.3633 0.4346 -0.9312 24 1 -0.3632 -1.0237 0.0892 25 1 -0.3633 0.5892 0.8420 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7453 1.0844 -1.0842 29 1 3.9016 0.8798 0.6770 30 1 4.2249 2.8200 -2.5753 31 1 3.4785 5.4007 -3.3623 32 1 1.9954 4.4166 -3.3427 33 1 5.4537 3.2036 -4.2142 34 1 5.2462 3.4874 -5.9591 35 1 5.3260 4.8664 -4.8364 36 1 1.9087 2.2960 -4.7309 37 1 3.2619 1.9055 -5.8188 38 1 3.4670 1.7623 -4.0563 39 1 3.9059 2.9393 -8.4298 40 1 3.6308 4.5538 1.5696 41 1 3.6932 2.8478 2.2677 42 1 5.8099 2.3846 0.9482 43 1 5.7484 4.0902 0.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458041371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:56 Heat of formation + Delta-G solvation = -72.016928 kcal Electronic energy + Delta-G solvation = -21593.218166 eV Core-core repulsion = 18446.080119 eV Total energy + Delta-G solvation = -3147.138047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.88211 -37.94970 -36.70720 -35.78570 -33.20928 -31.37796 -30.80178 -27.26300 -25.70934 -25.66615 -25.03318 -22.93479 -22.47054 -22.34398 -19.25104 -18.71364 -17.27826 -16.47400 -16.04571 -15.74434 -15.34067 -15.03476 -14.68630 -14.20618 -13.99508 -13.37448 -13.26489 -12.91767 -12.70131 -12.53317 -12.18989 -12.01005 -11.61830 -11.54946 -11.36491 -11.23456 -11.16775 -10.86319 -10.65976 -10.60629 -10.37246 -10.27816 -10.16511 -9.63827 -9.61537 -9.45325 -9.14872 -8.76297 -8.41235 -8.25116 -6.00715 -4.10670 2.96328 3.28146 3.35414 3.36660 3.41645 3.74986 3.99273 4.41542 4.61204 4.81428 4.89798 4.97654 5.06576 5.14431 5.25929 5.28459 5.34409 5.51442 5.52421 5.62318 5.78901 5.85271 5.86495 6.07916 6.10377 6.28538 6.36932 6.53598 6.81961 6.84937 6.97338 7.04391 7.09987 7.16293 7.38216 7.57110 7.71051 8.03258 8.11548 8.20619 8.41189 8.79265 8.90842 9.55072 11.00500 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020735 B = 0.004848 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.021088 B = 5774.609289 C = 6405.356448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.107 3.893 5 C -0.161 4.161 6 C 0.548 3.452 7 O -0.547 6.547 8 N -0.711 5.711 9 C 0.133 3.867 10 C 0.055 3.945 11 C -0.132 4.132 12 C -0.128 4.128 13 C -0.503 4.503 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.137 4.137 22 C -0.150 4.150 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.396 0.604 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.006 0.994 34 H 0.087 0.913 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.005 0.995 39 H 0.259 0.741 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -7.544 14.501 16.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.298 6.298 4 C 0.030 3.970 5 C -0.165 4.165 6 C 0.333 3.667 7 O -0.425 6.425 8 N -0.361 5.361 9 C 0.010 3.990 10 C 0.055 3.945 11 C -0.189 4.189 12 C -0.186 4.186 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.174 4.174 22 C -0.188 4.188 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.231 0.769 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.106 0.894 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.406 -6.772 14.505 16.070 hybrid contribution 0.001 -0.193 -0.986 1.005 sum 1.407 -6.966 13.518 15.272 Atomic orbital electron populations 1.21733 0.93726 1.01973 1.03447 1.22456 0.95796 0.83823 0.99845 1.87999 1.20780 1.26191 1.94799 1.21819 0.82239 0.92434 1.00530 1.21416 1.03173 0.95476 0.96408 1.19195 0.79779 0.84704 0.83036 1.90647 1.40106 1.28565 1.83226 1.46177 1.50075 1.34250 1.05600 1.21723 0.97435 0.93338 0.86462 1.18361 0.93323 0.93353 0.89489 1.21841 0.97019 0.97857 1.02214 1.21798 0.98125 0.97559 1.01103 1.21039 1.29179 1.13649 0.90286 0.92406 1.24881 0.95061 0.95078 0.98557 1.69813 1.38025 1.26430 1.18268 0.86518 0.79272 0.80148 0.81978 1.19755 1.21073 1.21074 1.22928 0.99378 1.02991 0.92106 1.23073 0.89455 1.03783 1.02475 0.91631 0.91261 0.91839 0.93247 0.93686 0.92372 0.92650 0.76881 0.93018 0.92576 0.97490 0.89434 0.95613 0.95475 0.89659 0.97633 0.93101 0.87523 0.88131 0.87866 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 2 C 0.06 0.64 6.66 37.16 0.25 0.89 16 3 O -0.38 -5.56 10.27 -35.23 -0.36 -5.92 16 4 C 0.11 1.34 5.74 37.16 0.21 1.55 16 5 C -0.16 -2.27 2.18 -155.66 -0.34 -2.61 16 6 C 0.55 10.29 7.09 -10.99 -0.08 10.21 16 7 O -0.55 -12.35 16.49 5.55 0.09 -12.26 16 8 N -0.71 -13.40 4.94 -60.29 -0.30 -13.70 16 9 C 0.13 2.94 4.51 -4.04 -0.02 2.92 16 10 C 0.06 1.31 0.51 -155.66 -0.08 1.23 16 11 C -0.13 -3.00 8.11 37.15 0.30 -2.70 16 12 C -0.13 -2.94 8.04 37.16 0.30 -2.64 16 13 C -0.50 -13.35 8.01 -34.44 -0.28 -13.62 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.07 1.73 5.14 -17.82 -0.09 1.63 16 16 N -0.89 -23.73 9.33 55.43 0.52 -23.21 16 17 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C -0.14 -1.67 9.76 -26.70 -0.26 -1.93 16 22 C -0.15 -1.63 9.93 -26.70 -0.26 -1.89 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 29 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.40 6.77 5.99 -40.82 -0.24 6.53 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.01 0.12 7.13 -51.93 -0.37 -0.25 16 34 H 0.09 2.20 5.96 -51.93 -0.31 1.89 16 35 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 38 H 0.00 0.10 6.73 -51.93 -0.35 -0.25 16 39 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.11 1.45 7.84 -51.93 -0.41 1.04 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -30.10 347.30 -7.24 -37.34 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.44 Total: 4.81 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 0.04 Total: -8.16 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.22 Total: -36.91 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.27 Total: -18.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.10 -7.24 -37.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458041371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.677 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds