Wall clock time and date at job start Mon Mar 30 2020 01:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47210 * 2 1 4 4 C 1.42897 * 114.00112 * 180.02562 * 3 2 1 5 5 C 1.53784 * 113.61302 * 210.00231 * 4 3 2 6 6 C 1.53786 * 87.08081 * 220.02161 * 5 4 3 7 7 C 1.50695 * 113.61269 * 139.98220 * 6 5 4 8 8 O 1.21274 * 120.00413 * 1.79946 * 7 6 5 9 9 N 1.34784 * 119.99635 * 181.52904 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47195 * 300.00079 * 11 10 9 13 13 C 1.52997 * 109.47296 * 60.00021 * 11 10 9 14 14 C 1.50700 * 109.47257 * 180.02562 * 11 10 9 15 15 H 1.07999 * 119.99988 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00042 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00041 * 0.02562 * 16 14 11 18 18 Si 1.86809 * 120.00110 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46984 * 90.00166 * 18 16 14 20 20 H 1.48497 * 109.46888 * 210.00221 * 18 16 14 21 21 H 1.48497 * 109.46587 * 330.00223 * 18 16 14 22 22 C 1.53782 * 87.17120 * 25.39020 * 6 5 4 23 23 H 1.09000 * 109.47401 * 299.99104 * 1 2 3 24 24 H 1.09004 * 109.47604 * 60.00144 * 1 2 3 25 25 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47396 * 240.00448 * 2 1 3 27 27 H 1.08997 * 109.47325 * 120.00082 * 2 1 3 28 28 H 1.09000 * 112.90745 * 341.25315 * 4 3 2 29 29 H 1.08991 * 113.61760 * 105.47157 * 5 4 3 30 30 H 1.08997 * 113.61484 * 334.56732 * 5 4 3 31 31 H 1.08994 * 113.61418 * 270.80062 * 6 5 4 32 32 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.47024 * 300.00310 * 10 9 7 34 34 H 1.09005 * 109.47136 * 59.99926 * 10 9 7 35 35 H 1.08996 * 109.47248 * 59.99581 * 12 11 10 36 36 H 1.08996 * 109.47200 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.46932 * 299.99931 * 12 11 10 38 38 H 1.08997 * 109.47440 * 60.00077 * 13 11 10 39 39 H 1.08998 * 109.47244 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.47269 * 300.00171 * 13 11 10 41 41 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 42 42 H 1.09000 * 113.61491 * 89.16239 * 22 6 5 43 43 H 1.09003 * 113.61159 * 220.06267 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9488 2.7251 0.7040 6 6 4.9895 2.8316 -0.4232 7 6 5.2269 4.2432 -0.8943 8 8 4.6434 5.1653 -0.3651 9 7 6.0919 4.4815 -1.9001 10 6 6.3223 5.8537 -2.3584 11 6 7.3400 5.8457 -3.5008 12 6 8.6574 5.2453 -3.0060 13 6 6.7997 5.0051 -4.6593 14 6 7.5775 7.2574 -3.9718 15 1 7.0552 8.0782 -3.5030 16 6 8.4624 7.5012 -5.0006 17 7 9.0989 6.5017 -5.5712 18 14 8.7563 9.2510 -5.5850 19 1 9.8748 9.8494 -4.8129 20 1 9.1024 9.2389 -7.0291 21 1 7.5254 10.0553 -5.3776 22 6 4.0037 2.0458 -1.3040 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.9289 0.5458 0.3218 29 1 4.3848 2.5316 1.6839 30 1 3.2303 3.5447 0.7137 31 1 5.9143 2.2934 -0.2159 32 1 6.5613 3.7443 -2.3210 33 1 5.3838 6.2813 -2.7113 34 1 6.7069 6.4528 -1.5329 35 1 8.4860 4.2243 -2.6650 36 1 9.3826 5.2400 -3.8197 37 1 9.0424 5.8442 -2.1806 38 1 5.8612 5.4328 -5.0118 39 1 7.5249 4.9991 -5.4730 40 1 6.6282 3.9841 -4.3183 41 1 9.7212 6.6732 -6.2953 42 1 3.3003 2.6793 -1.8443 43 1 4.4841 1.3045 -1.9427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:35 Heat of formation + Delta-G solvation = -79.691954 kcal Electronic energy + Delta-G solvation = -20928.210501 eV Core-core repulsion = 17780.739640 eV Total energy + Delta-G solvation = -3147.470861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.20506 -38.43871 -36.58184 -35.78638 -33.23005 -31.24021 -30.80193 -26.70562 -25.77477 -25.71966 -25.36555 -24.15964 -23.01151 -20.75766 -19.36748 -18.73142 -17.72807 -16.27890 -15.91640 -15.73308 -15.65459 -14.95694 -14.72903 -14.37074 -14.00127 -13.24202 -13.10439 -12.94987 -12.76996 -12.58758 -12.45399 -12.18611 -11.68731 -11.63691 -11.38287 -11.18926 -11.16239 -10.93290 -10.86452 -10.71384 -10.68044 -10.37806 -10.19686 -9.62864 -9.60551 -9.46768 -9.15797 -8.77744 -8.43731 -8.28436 -6.01852 -4.11797 3.05628 3.28615 3.35511 3.39225 3.44784 3.91422 4.39067 4.40942 4.51067 4.67919 4.71391 4.84360 4.97982 5.11660 5.17445 5.24946 5.38663 5.43647 5.62511 5.65898 5.72475 5.85506 5.91480 6.00078 6.20771 6.27946 6.34750 6.51981 6.79988 6.82862 6.94821 7.02545 7.06698 7.13640 7.36347 7.56069 7.69866 8.01406 8.08907 8.17888 8.39345 8.75532 8.89326 9.54047 10.99571 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040515 B = 0.003273 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.933222 B = 8552.088715 C = 8642.116975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.062 3.938 5 C -0.111 4.111 6 C -0.138 4.138 7 C 0.516 3.484 8 O -0.551 6.551 9 N -0.715 5.715 10 C 0.131 3.869 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.130 4.130 14 C -0.506 4.506 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.138 4.138 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.398 0.602 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.006 0.994 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.085 0.915 40 H 0.006 0.994 41 H 0.260 0.740 42 H 0.095 0.905 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 -14.732 8.649 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.005 3.995 5 C -0.149 4.149 6 C -0.160 4.160 7 C 0.301 3.699 8 O -0.430 6.430 9 N -0.365 5.365 10 C 0.008 3.992 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.188 4.188 14 C -0.544 4.544 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.176 4.176 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.233 0.767 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.104 0.896 40 H 0.025 0.975 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.533 -13.918 8.856 19.053 hybrid contribution 0.721 0.336 -0.615 1.006 sum -8.812 -13.582 8.241 18.166 Atomic orbital electron populations 1.21751 0.93906 1.02078 1.03235 1.22504 0.95601 0.84226 0.99865 1.88000 1.20625 1.25976 1.94531 1.23715 0.81084 0.98008 0.96741 1.23084 0.97137 0.97831 0.96856 1.22491 0.99302 0.94919 0.99265 1.20197 0.79403 0.90160 0.80155 1.90657 1.49555 1.45706 1.57039 1.46310 1.43364 1.11320 1.35502 1.21710 0.99667 0.80088 0.97693 1.18347 0.90297 0.96056 0.89758 1.21834 1.01082 0.95134 1.00824 1.21824 1.00414 0.94833 1.01743 1.20999 1.24483 0.91524 1.17416 0.92455 1.24880 0.95522 0.96989 0.96131 1.69804 1.27870 1.30116 1.24735 0.86573 0.78586 0.84929 0.77803 1.20715 1.21264 1.19896 1.23449 0.97713 0.99363 0.97042 0.91864 0.91785 0.91274 0.93416 0.93512 0.89380 0.90691 0.87730 0.87001 0.76750 0.92821 0.92787 0.97500 0.89596 0.95461 0.95463 0.89619 0.97493 0.93023 0.88675 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.15 0.38 -0.76 16 2 C 0.05 0.47 6.50 37.15 0.24 0.71 16 3 O -0.37 -4.42 10.36 -35.23 -0.36 -4.78 16 4 C 0.06 0.66 4.31 -25.83 -0.11 0.55 16 5 C -0.11 -1.36 7.23 -25.91 -0.19 -1.55 16 6 C -0.14 -1.74 4.14 -90.96 -0.38 -2.12 16 7 C 0.52 9.01 7.35 -10.98 -0.08 8.93 16 8 O -0.55 -11.78 15.91 5.56 0.09 -11.69 16 9 N -0.71 -12.82 4.96 -60.30 -0.30 -13.12 16 10 C 0.13 2.83 4.50 -4.05 -0.02 2.81 16 11 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 12 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 13 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 14 C -0.51 -13.35 8.01 -34.44 -0.28 -13.62 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.68 9.35 55.43 0.52 -23.17 16 18 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 C -0.14 -1.58 7.48 -25.83 -0.19 -1.77 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.55 7.46 -51.93 -0.39 1.17 16 31 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.40 6.40 6.16 -40.82 -0.25 6.15 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 36 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 40 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 41 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 42 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -29.42 342.25 -7.54 -36.96 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.43 Total: 4.09 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -0.19 Total: -9.25 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.22 Total: -36.29 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.28 Total: -16.47 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.42 -7.54 -36.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.734 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds