Wall clock time and date at job start Mon Mar 30 2020 01:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47210 * 2 1 4 4 C 1.42897 * 114.00112 * 180.02562 * 3 2 1 5 5 C 1.53784 * 113.61302 * 210.00231 * 4 3 2 6 6 C 1.53786 * 87.08081 * 220.02161 * 5 4 3 7 7 C 1.50695 * 113.61269 * 139.98220 * 6 5 4 8 8 O 1.21274 * 120.00413 * 1.79946 * 7 6 5 9 9 N 1.34784 * 119.99635 * 181.52904 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47195 * 300.00079 * 11 10 9 13 13 C 1.52997 * 109.47296 * 60.00021 * 11 10 9 14 14 C 1.50700 * 109.47257 * 180.02562 * 11 10 9 15 15 H 1.07999 * 119.99988 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00042 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00041 * 0.02562 * 16 14 11 18 18 Si 1.86809 * 120.00110 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46984 * 90.00166 * 18 16 14 20 20 H 1.48497 * 109.46888 * 210.00221 * 18 16 14 21 21 H 1.48497 * 109.46587 * 330.00223 * 18 16 14 22 22 C 1.53782 * 87.17120 * 25.39020 * 6 5 4 23 23 H 1.09000 * 109.47401 * 299.99104 * 1 2 3 24 24 H 1.09004 * 109.47604 * 60.00144 * 1 2 3 25 25 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47396 * 240.00448 * 2 1 3 27 27 H 1.08997 * 109.47325 * 120.00082 * 2 1 3 28 28 H 1.09000 * 112.90745 * 341.25315 * 4 3 2 29 29 H 1.08991 * 113.61760 * 105.47157 * 5 4 3 30 30 H 1.08997 * 113.61484 * 334.56732 * 5 4 3 31 31 H 1.08994 * 113.61418 * 270.80062 * 6 5 4 32 32 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.47024 * 300.00310 * 10 9 7 34 34 H 1.09005 * 109.47136 * 59.99926 * 10 9 7 35 35 H 1.08996 * 109.47248 * 59.99581 * 12 11 10 36 36 H 1.08996 * 109.47200 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.46932 * 299.99931 * 12 11 10 38 38 H 1.08997 * 109.47440 * 60.00077 * 13 11 10 39 39 H 1.08998 * 109.47244 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.47269 * 300.00171 * 13 11 10 41 41 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 42 42 H 1.09000 * 113.61491 * 89.16239 * 22 6 5 43 43 H 1.09003 * 113.61159 * 220.06267 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9488 2.7251 0.7040 6 6 4.9895 2.8316 -0.4232 7 6 5.2269 4.2432 -0.8943 8 8 4.6434 5.1653 -0.3651 9 7 6.0919 4.4815 -1.9001 10 6 6.3223 5.8537 -2.3584 11 6 7.3400 5.8457 -3.5008 12 6 8.6574 5.2453 -3.0060 13 6 6.7997 5.0051 -4.6593 14 6 7.5775 7.2574 -3.9718 15 1 7.0552 8.0782 -3.5030 16 6 8.4624 7.5012 -5.0006 17 7 9.0989 6.5017 -5.5712 18 14 8.7563 9.2510 -5.5850 19 1 9.8748 9.8494 -4.8129 20 1 9.1024 9.2389 -7.0291 21 1 7.5254 10.0553 -5.3776 22 6 4.0037 2.0458 -1.3040 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.9289 0.5458 0.3218 29 1 4.3848 2.5316 1.6839 30 1 3.2303 3.5447 0.7137 31 1 5.9143 2.2934 -0.2159 32 1 6.5613 3.7443 -2.3210 33 1 5.3838 6.2813 -2.7113 34 1 6.7069 6.4528 -1.5329 35 1 8.4860 4.2243 -2.6650 36 1 9.3826 5.2400 -3.8197 37 1 9.0424 5.8442 -2.1806 38 1 5.8612 5.4328 -5.0118 39 1 7.5249 4.9991 -5.4730 40 1 6.6282 3.9841 -4.3183 41 1 9.7212 6.6732 -6.2953 42 1 3.3003 2.6793 -1.8443 43 1 4.4841 1.3045 -1.9427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458048325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:35 Heat of formation + Delta-G solvation = -97.743271 kcal Electronic energy + Delta-G solvation = -20928.993264 eV Core-core repulsion = 17780.739640 eV Total energy + Delta-G solvation = -3148.253624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38044 -39.60996 -38.14063 -36.89382 -34.98242 -32.73877 -31.82640 -28.11093 -27.56496 -27.28172 -26.68235 -25.60183 -23.65432 -21.99219 -20.67025 -20.37273 -18.88567 -17.83923 -17.19041 -16.87342 -16.58379 -16.54462 -16.25403 -15.80293 -15.21326 -14.78795 -14.49991 -14.33080 -13.96660 -13.78408 -13.45597 -13.38645 -13.18995 -13.09841 -12.70032 -12.62137 -12.43531 -12.41471 -12.25492 -12.14062 -12.02157 -11.77896 -11.56083 -11.48914 -11.26105 -10.77843 -10.63683 -10.40513 -10.32650 -9.93267 -8.03334 -6.19049 1.41471 1.44287 1.52635 1.68368 2.30197 2.48428 2.90341 3.20113 3.45580 3.58893 3.79140 3.90140 4.13174 4.24455 4.33559 4.45609 4.46429 4.51272 4.55564 4.70988 4.73616 4.81207 4.88580 4.98805 4.99432 5.05599 5.06944 5.09924 5.12419 5.19087 5.24728 5.34725 5.38146 5.60964 5.66395 5.67054 6.15133 6.21288 6.41791 6.43130 6.70796 6.85020 7.35693 7.48682 8.95540 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040515 B = 0.003273 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.933222 B = 8552.088715 C = 8642.116975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 O -0.402 6.402 4 C 0.074 3.926 5 C -0.119 4.119 6 C -0.129 4.129 7 C 0.511 3.489 8 O -0.596 6.596 9 N -0.708 5.708 10 C 0.147 3.853 11 C 0.052 3.948 12 C -0.121 4.121 13 C -0.120 4.120 14 C -0.531 4.531 15 H 0.042 0.958 16 C 0.029 3.971 17 N -0.898 5.898 18 Si 0.944 3.056 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.277 1.277 22 C -0.136 4.136 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.151 0.849 32 H 0.410 0.590 33 H 0.032 0.968 34 H 0.036 0.964 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.017 0.983 38 H 0.015 0.985 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.261 0.739 42 H 0.066 0.934 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 -17.273 9.102 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.321 6.321 4 C 0.016 3.984 5 C -0.157 4.157 6 C -0.150 4.150 7 C 0.299 3.701 8 O -0.478 6.478 9 N -0.359 5.359 10 C 0.023 3.977 11 C 0.052 3.948 12 C -0.179 4.179 13 C -0.178 4.178 14 C -0.569 4.569 15 H 0.060 0.940 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.771 3.229 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.203 1.203 22 C -0.175 4.175 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.143 0.857 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.247 0.753 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.193 -16.492 9.302 21.048 hybrid contribution 0.562 1.130 -0.733 1.459 sum -8.630 -15.362 8.570 19.594 Atomic orbital electron populations 1.21791 0.93629 1.03296 1.02331 1.22739 0.95980 0.82952 1.01216 1.87979 1.21382 1.28206 1.94582 1.23732 0.80958 0.98396 0.95298 1.23090 0.96632 0.97915 0.98090 1.22607 1.01225 0.91589 0.99609 1.21139 0.77929 0.91990 0.79035 1.90640 1.50992 1.47823 1.58329 1.46143 1.43843 1.10017 1.35864 1.21250 0.97994 0.82033 0.96472 1.18340 0.91188 0.94841 0.90468 1.21677 0.99759 0.96874 0.99588 1.21667 0.98996 0.96484 1.00666 1.21286 1.24809 0.92889 1.17966 0.93997 1.25439 0.95427 0.99947 0.96264 1.69900 1.27874 1.31175 1.24757 0.85772 0.78171 0.81424 0.77519 1.20414 1.20669 1.20259 1.23443 0.96959 0.99325 0.97727 0.92562 0.92918 0.88994 0.92273 0.91783 0.85727 0.88748 0.91356 0.83180 0.75269 0.94922 0.94564 0.94141 0.91815 0.96366 0.96565 0.91801 0.94230 0.92971 0.91495 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.69 6.50 71.98 0.47 1.16 16 3 O -0.40 -8.86 10.36 -148.98 -1.54 -10.40 16 4 C 0.07 1.34 4.31 31.18 0.13 1.47 16 5 C -0.12 -2.72 7.23 31.12 0.22 -2.50 16 6 C -0.13 -2.92 4.14 -11.01 -0.05 -2.97 16 7 C 0.51 17.48 7.35 87.65 0.64 18.13 16 8 O -0.60 -26.08 15.91 -3.01 -0.05 -26.13 16 9 N -0.71 -24.56 4.96 -463.07 -2.30 -26.85 16 10 C 0.15 6.40 4.50 86.38 0.39 6.79 16 11 C 0.05 2.43 0.50 -52.93 -0.03 2.41 16 12 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 13 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 14 C -0.53 -28.49 8.01 25.60 0.21 -28.29 16 15 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 16 C 0.03 1.54 5.15 84.65 0.44 1.98 16 17 N -0.90 -47.95 9.35 21.45 0.20 -47.75 16 18 Si 0.94 42.95 29.54 68.60 2.03 44.97 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C -0.14 -2.77 7.48 31.18 0.23 -2.53 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 28 H 0.13 1.39 7.87 -2.39 -0.02 1.37 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.08 7.46 -2.39 -0.02 2.06 16 31 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.41 12.05 6.16 -92.71 -0.57 11.48 16 33 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 36 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 37 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 40 H 0.04 1.45 6.86 -2.38 -0.02 1.44 16 41 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 42 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 43 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.55 342.25 3.31 -62.24 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.41 Total: 19.14 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.57 Total: -15.22 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -2.10 Total: -74.60 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.59 Total: -36.54 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -65.55 3.31 -62.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.502 kcal (2) G-P(sol) polarization free energy of solvation -65.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds