Wall clock time and date at job start Mon Mar 30 2020 01:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42893 * 109.47092 * 2 1 4 4 C 1.42908 * 114.00078 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47165 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.70092 * 185.93076 * 5 4 3 7 7 C 1.53188 * 109.58684 * 306.28852 * 5 4 3 8 8 C 1.53045 * 109.30884 * 174.42463 * 7 5 4 9 9 C 1.53038 * 109.53596 * 298.62833 * 8 7 5 10 10 C 1.53193 * 109.30895 * 61.36857 * 9 8 7 11 11 N 1.46921 * 108.77727 * 305.36321 * 10 9 8 12 12 C 1.34780 * 120.62778 * 233.63127 * 11 10 9 13 13 O 1.21283 * 119.99718 * 174.87324 * 12 11 10 14 14 C 1.50692 * 120.00116 * 354.87743 * 12 11 10 15 15 C 1.53007 * 109.47134 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47134 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00661 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99878 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00005 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00094 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46617 * 90.00216 * 20 18 16 22 22 H 1.48493 * 109.47476 * 210.00132 * 20 18 16 23 23 H 1.48505 * 109.46970 * 330.00658 * 20 18 16 24 24 H 1.09003 * 109.47391 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47556 * 300.00268 * 1 2 3 26 26 H 1.09005 * 109.47332 * 60.00120 * 1 2 3 27 27 H 1.09005 * 109.46876 * 239.99414 * 2 1 3 28 28 H 1.08998 * 109.46956 * 119.99891 * 2 1 3 29 29 H 1.09002 * 109.46811 * 59.99725 * 4 3 2 30 30 H 1.08998 * 109.47230 * 300.00569 * 4 3 2 31 31 H 1.08994 * 109.50077 * 54.47073 * 7 5 4 32 32 H 1.09007 * 109.49787 * 294.36825 * 7 5 4 33 33 H 1.09004 * 109.45659 * 178.60943 * 8 7 5 34 34 H 1.08995 * 109.46435 * 58.65273 * 8 7 5 35 35 H 1.09003 * 109.49891 * 181.32000 * 9 8 7 36 36 H 1.08999 * 109.49765 * 301.38221 * 9 8 7 37 37 H 1.09001 * 109.58659 * 65.15839 * 10 9 8 38 38 H 1.09005 * 109.58138 * 185.43301 * 10 9 8 39 39 H 1.09001 * 109.47242 * 299.99720 * 14 12 11 40 40 H 1.08998 * 109.47661 * 59.99886 * 14 12 11 41 41 H 1.09001 * 109.46792 * 299.99952 * 15 14 12 42 42 H 1.08998 * 109.46976 * 59.99422 * 15 14 12 43 43 H 0.97000 * 119.99707 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 1 4.9063 3.0301 -0.1057 7 6 3.1330 3.6541 -1.1642 8 6 3.4195 5.1550 -1.0777 9 6 2.8566 5.7088 0.2332 10 6 3.5458 5.0162 1.4131 11 7 3.3988 3.5625 1.2597 12 6 2.8820 2.8157 2.2556 13 8 2.6792 1.6324 2.0837 14 6 2.5560 3.4511 3.5826 15 6 1.9877 2.3919 4.5293 16 6 1.6611 3.0274 5.8561 17 1 1.8412 4.0812 6.0091 18 6 1.1333 2.2632 6.8752 19 7 0.8487 2.8178 8.0333 20 14 0.8224 0.4403 6.6110 21 1 2.0328 -0.3290 6.9958 22 1 -0.3258 0.0076 7.4473 23 1 0.5132 0.1933 5.1796 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5140 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.8340 0.9763 -0.8892 30 1 3.8333 0.9766 0.8907 31 1 2.0577 3.4851 -1.1073 32 1 3.5136 3.2649 -2.1086 33 1 2.9484 5.6636 -1.9189 34 1 4.4962 5.3216 -1.1097 35 1 3.0403 6.7820 0.2834 36 1 1.7838 5.5210 0.2765 37 1 4.6040 5.2776 1.4228 38 1 3.0819 5.3362 2.3461 39 1 3.4623 3.8754 4.0147 40 1 1.8192 4.2409 3.4361 41 1 1.0815 1.9673 4.0974 42 1 2.7248 1.6025 4.6757 43 1 0.4770 2.2802 8.7501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458094601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:05 Heat of formation + Delta-G solvation = -82.953593 kcal Electronic energy + Delta-G solvation = -22198.241044 eV Core-core repulsion = 19050.628748 eV Total energy + Delta-G solvation = -3147.612296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28938 -37.26568 -37.05892 -33.59051 -32.68898 -32.41707 -30.97482 -30.32322 -26.99756 -25.73742 -24.31339 -22.49981 -22.23575 -21.17232 -20.14953 -18.48742 -17.14115 -16.54829 -16.27534 -15.44607 -15.28232 -14.93994 -14.66407 -14.15766 -14.01822 -13.91471 -13.37556 -13.28756 -13.01192 -12.65350 -12.49586 -12.22895 -12.09353 -11.86019 -11.36156 -11.27631 -11.12255 -11.06913 -10.92008 -10.78357 -10.68311 -10.41305 -10.04291 -9.93039 -9.72963 -9.18427 -9.13565 -8.54908 -8.47835 -8.14998 -6.00338 -3.98311 3.22256 3.33506 3.38819 3.45354 3.56455 4.05143 4.53076 4.69696 4.75513 4.81974 5.05925 5.20498 5.28764 5.30347 5.35450 5.40800 5.44517 5.52233 5.60251 5.62458 5.72387 5.72978 5.81637 5.90765 5.95354 5.97198 6.09298 6.10229 6.17105 6.19743 6.26262 6.36168 6.39949 6.74368 6.88611 7.41591 7.50538 7.64771 7.78645 7.87602 8.54479 8.82387 9.03675 9.63172 11.12696 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.006179 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.232970 B = 4530.581681 C = 5680.133069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 O -0.366 6.366 4 C 0.069 3.931 5 C 0.151 3.849 6 H 0.076 0.924 7 C -0.128 4.128 8 C -0.118 4.118 9 C -0.136 4.136 10 C 0.109 3.891 11 N -0.617 5.617 12 C 0.513 3.487 13 O -0.516 6.516 14 C -0.120 4.120 15 C 0.005 3.995 16 C -0.523 4.523 17 H 0.071 0.929 18 C 0.069 3.931 19 N -0.905 5.905 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.261 1.261 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.030 0.970 28 H 0.050 0.950 29 H 0.026 0.974 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.023 0.977 42 H 0.017 0.983 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 2.009 -20.300 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.007 4.007 3 O -0.285 6.285 4 C -0.007 4.007 5 C 0.047 3.953 6 H 0.094 0.906 7 C -0.166 4.166 8 C -0.155 4.155 9 C -0.174 4.174 10 C -0.014 4.014 11 N -0.354 5.354 12 C 0.304 3.696 13 O -0.391 6.391 14 C -0.160 4.160 15 C -0.033 4.033 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.544 5.544 20 Si 0.704 3.296 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.185 1.185 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.041 0.959 42 H 0.035 0.965 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.627 1.474 -20.194 21.015 hybrid contribution 0.023 -0.987 -0.048 0.988 sum 5.650 0.487 -20.242 21.021 Atomic orbital electron populations 1.21686 0.94563 1.01504 1.02705 1.22181 0.94848 0.84645 0.98984 1.87839 1.20124 1.25440 1.95056 1.22632 0.83606 0.94770 0.99723 1.21217 0.97406 0.92184 0.84475 0.90588 1.21902 1.02638 0.94837 0.97254 1.21507 1.00703 0.95841 0.97493 1.21919 1.01091 0.99577 0.94802 1.21678 1.00345 0.79856 0.99503 1.48166 1.64720 1.07502 1.14993 1.21336 0.75497 0.87097 0.85704 1.90581 1.50978 1.16254 1.81332 1.21677 1.01977 1.01117 0.91254 1.19336 0.96339 0.93800 0.93844 1.21139 1.42178 0.97451 0.95302 0.91039 1.24969 0.94853 0.98479 0.94936 1.69917 1.44539 1.36326 1.03623 0.86798 0.77931 0.85854 0.78979 1.20358 1.21528 1.18507 0.91840 0.91643 0.92710 0.95169 0.93175 0.95569 0.89947 0.90336 0.91637 0.92006 0.92159 0.90996 0.91296 0.91909 0.89003 0.90097 0.90014 0.95863 0.96508 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 37.15 0.38 -1.66 16 2 C 0.07 1.06 6.29 37.15 0.23 1.29 16 3 O -0.37 -6.10 7.26 -59.94 -0.44 -6.54 16 4 C 0.07 1.01 4.71 37.16 0.18 1.19 16 5 C 0.15 1.93 3.29 -67.60 -0.22 1.71 16 6 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.13 -1.42 5.25 -26.61 -0.14 -1.56 16 8 C -0.12 -1.09 5.88 -26.69 -0.16 -1.24 16 9 C -0.14 -1.35 6.08 -26.61 -0.16 -1.51 16 10 C 0.11 1.26 6.32 -3.71 -0.02 1.24 16 11 N -0.62 -9.01 2.97 -165.23 -0.49 -9.50 16 12 C 0.51 9.56 7.41 -10.99 -0.08 9.48 16 13 O -0.52 -10.84 9.76 -19.15 -0.19 -11.03 16 14 C -0.12 -2.41 4.04 -27.88 -0.11 -2.52 16 15 C 0.00 0.12 3.33 -27.88 -0.09 0.03 16 16 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 20 Si 0.88 22.78 27.47 -169.99 -4.67 18.11 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 1.40 5.98 -52.09 -0.31 1.09 16 31 H 0.08 1.05 7.36 -51.93 -0.38 0.67 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.10 5.97 -51.93 -0.31 0.79 16 39 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 40 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 41 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 42 H 0.02 0.43 7.53 -51.93 -0.39 0.04 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -33.02 331.65 -8.29 -41.30 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.64 Total: -2.79 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.63 Total: -7.04 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.28 Total: -37.02 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.62 Total: -17.56 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.02 -8.29 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458094601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.652 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds