Wall clock time and date at job start Mon Mar 30 2020 01:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42893 * 109.47092 * 2 1 4 4 C 1.42908 * 114.00078 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47165 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.70092 * 185.93076 * 5 4 3 7 7 C 1.53188 * 109.58684 * 306.28852 * 5 4 3 8 8 C 1.53045 * 109.30884 * 174.42463 * 7 5 4 9 9 C 1.53038 * 109.53596 * 298.62833 * 8 7 5 10 10 C 1.53193 * 109.30895 * 61.36857 * 9 8 7 11 11 N 1.46921 * 108.77727 * 305.36321 * 10 9 8 12 12 C 1.34780 * 120.62778 * 233.63127 * 11 10 9 13 13 O 1.21283 * 119.99718 * 174.87324 * 12 11 10 14 14 C 1.50692 * 120.00116 * 354.87743 * 12 11 10 15 15 C 1.53007 * 109.47134 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47134 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00661 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99878 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00005 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00094 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46617 * 90.00216 * 20 18 16 22 22 H 1.48493 * 109.47476 * 210.00132 * 20 18 16 23 23 H 1.48505 * 109.46970 * 330.00658 * 20 18 16 24 24 H 1.09003 * 109.47391 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47556 * 300.00268 * 1 2 3 26 26 H 1.09005 * 109.47332 * 60.00120 * 1 2 3 27 27 H 1.09005 * 109.46876 * 239.99414 * 2 1 3 28 28 H 1.08998 * 109.46956 * 119.99891 * 2 1 3 29 29 H 1.09002 * 109.46811 * 59.99725 * 4 3 2 30 30 H 1.08998 * 109.47230 * 300.00569 * 4 3 2 31 31 H 1.08994 * 109.50077 * 54.47073 * 7 5 4 32 32 H 1.09007 * 109.49787 * 294.36825 * 7 5 4 33 33 H 1.09004 * 109.45659 * 178.60943 * 8 7 5 34 34 H 1.08995 * 109.46435 * 58.65273 * 8 7 5 35 35 H 1.09003 * 109.49891 * 181.32000 * 9 8 7 36 36 H 1.08999 * 109.49765 * 301.38221 * 9 8 7 37 37 H 1.09001 * 109.58659 * 65.15839 * 10 9 8 38 38 H 1.09005 * 109.58138 * 185.43301 * 10 9 8 39 39 H 1.09001 * 109.47242 * 299.99720 * 14 12 11 40 40 H 1.08998 * 109.47661 * 59.99886 * 14 12 11 41 41 H 1.09001 * 109.46792 * 299.99952 * 15 14 12 42 42 H 1.08998 * 109.46976 * 59.99422 * 15 14 12 43 43 H 0.97000 * 119.99707 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 1 4.9063 3.0301 -0.1057 7 6 3.1330 3.6541 -1.1642 8 6 3.4195 5.1550 -1.0777 9 6 2.8566 5.7088 0.2332 10 6 3.5458 5.0162 1.4131 11 7 3.3988 3.5625 1.2597 12 6 2.8820 2.8157 2.2556 13 8 2.6792 1.6324 2.0837 14 6 2.5560 3.4511 3.5826 15 6 1.9877 2.3919 4.5293 16 6 1.6611 3.0274 5.8561 17 1 1.8412 4.0812 6.0091 18 6 1.1333 2.2632 6.8752 19 7 0.8487 2.8178 8.0333 20 14 0.8224 0.4403 6.6110 21 1 2.0328 -0.3290 6.9958 22 1 -0.3258 0.0076 7.4473 23 1 0.5132 0.1933 5.1796 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5140 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.8340 0.9763 -0.8892 30 1 3.8333 0.9766 0.8907 31 1 2.0577 3.4851 -1.1073 32 1 3.5136 3.2649 -2.1086 33 1 2.9484 5.6636 -1.9189 34 1 4.4962 5.3216 -1.1097 35 1 3.0403 6.7820 0.2834 36 1 1.7838 5.5210 0.2765 37 1 4.6040 5.2776 1.4228 38 1 3.0819 5.3362 2.3461 39 1 3.4623 3.8754 4.0147 40 1 1.8192 4.2409 3.4361 41 1 1.0815 1.9673 4.0974 42 1 2.7248 1.6025 4.6757 43 1 0.4770 2.2802 8.7501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458094601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:05 Heat of formation + Delta-G solvation = -102.757371 kcal Electronic energy + Delta-G solvation = -22199.099801 eV Core-core repulsion = 19050.628748 eV Total energy + Delta-G solvation = -3148.471052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.51017 -38.54530 -38.15882 -35.58441 -34.01621 -33.53344 -32.78209 -31.41509 -28.44514 -27.27393 -25.32240 -23.77550 -23.60244 -22.40172 -21.45830 -19.85822 -18.98189 -17.90925 -17.60586 -16.70895 -16.57035 -16.25451 -16.17741 -15.61484 -15.12483 -14.97658 -14.88923 -14.60188 -14.42793 -14.15295 -13.84755 -13.54679 -13.32463 -13.16198 -12.91902 -12.81963 -12.31748 -12.23628 -12.02163 -11.95700 -11.93932 -11.77253 -11.70893 -11.54333 -11.42510 -11.27549 -10.78984 -10.41716 -9.88305 -9.32555 -8.32595 -6.35049 1.30646 1.32559 1.48216 1.83640 2.13661 2.33613 2.96144 3.03105 3.69875 3.88585 3.96748 4.10345 4.17170 4.21358 4.30427 4.34566 4.38260 4.43987 4.47755 4.50477 4.56302 4.63764 4.76529 4.83799 4.91025 4.98033 4.99719 5.05008 5.11003 5.16121 5.21457 5.26411 5.27383 5.34289 5.45624 5.55892 5.60641 5.79846 6.23433 6.49947 6.56389 6.71287 7.30131 7.44502 8.83319 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.006179 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.232970 B = 4530.581681 C = 5680.133069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 O -0.385 6.385 4 C 0.066 3.934 5 C 0.145 3.855 6 H 0.104 0.896 7 C -0.121 4.121 8 C -0.113 4.113 9 C -0.132 4.132 10 C 0.101 3.899 11 N -0.610 5.610 12 C 0.510 3.490 13 O -0.547 6.547 14 C -0.113 4.113 15 C 0.014 3.986 16 C -0.529 4.529 17 H 0.048 0.952 18 C 0.015 3.985 19 N -0.944 5.944 20 Si 0.939 3.061 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.085 0.915 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.005 0.995 42 H 0.007 0.993 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 2.257 -22.776 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.010 4.010 3 O -0.305 6.305 4 C -0.010 4.010 5 C 0.043 3.957 6 H 0.121 0.879 7 C -0.159 4.159 8 C -0.150 4.150 9 C -0.170 4.170 10 C -0.021 4.021 11 N -0.345 5.345 12 C 0.299 3.701 13 O -0.425 6.425 14 C -0.153 4.153 15 C -0.024 4.024 16 C -0.567 4.567 17 H 0.066 0.934 18 C -0.183 4.183 19 N -0.584 5.584 20 Si 0.763 3.237 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.188 1.188 24 H 0.104 0.896 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.024 0.976 42 H 0.026 0.974 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.787 1.761 -22.697 23.755 hybrid contribution -0.297 -0.982 0.701 1.243 sum 6.491 0.779 -21.996 22.947 Atomic orbital electron populations 1.21675 0.93876 1.02679 1.01733 1.22260 0.95502 0.84278 0.98925 1.87815 1.21357 1.26184 1.95097 1.22682 0.82667 0.96168 0.99474 1.21506 0.99022 0.91157 0.84017 0.87884 1.21836 1.00660 0.96227 0.97183 1.21505 1.01998 0.94234 0.97301 1.21905 0.99620 1.00914 0.94568 1.21963 1.02150 0.77957 1.00073 1.48141 1.63064 1.08629 1.14650 1.20966 0.76217 0.86858 0.86051 1.90600 1.52606 1.17395 1.81908 1.21478 1.02449 0.99667 0.91724 1.19137 0.95478 0.94707 0.93122 1.21444 1.41620 0.96615 0.96979 0.93414 1.25787 0.94825 1.02932 0.94729 1.70027 1.45715 1.38131 1.04573 0.85824 0.78435 0.80675 0.78736 1.19304 1.20309 1.18762 0.89645 0.94650 0.91478 0.92555 0.95757 0.93034 0.92869 0.93123 0.89584 0.90631 0.90191 0.88533 0.93380 0.89290 0.89864 0.88844 0.89403 0.97619 0.97428 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 10.28 71.98 0.74 -3.16 16 2 C 0.07 2.01 6.29 71.98 0.45 2.46 16 3 O -0.39 -12.77 7.26 -125.36 -0.91 -13.68 16 4 C 0.07 1.88 4.71 71.98 0.34 2.22 16 5 C 0.15 3.40 3.29 44.97 0.15 3.54 16 6 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 7 C -0.12 -2.33 5.25 30.67 0.16 -2.16 16 8 C -0.11 -1.65 5.88 30.62 0.18 -1.47 16 9 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 10 C 0.10 2.09 6.32 86.36 0.55 2.63 16 11 N -0.61 -16.93 2.97 -795.05 -2.36 -19.30 16 12 C 0.51 18.99 7.41 87.65 0.65 19.64 16 13 O -0.55 -23.45 9.76 20.58 0.20 -23.24 16 14 C -0.11 -4.57 4.04 29.85 0.12 -4.45 16 15 C 0.01 0.69 3.33 29.85 0.10 0.79 16 16 C -0.53 -31.29 9.66 25.60 0.25 -31.04 16 17 H 0.05 2.98 7.99 -2.91 -0.02 2.95 16 18 C 0.01 0.90 5.47 84.66 0.46 1.36 16 19 N -0.94 -59.96 13.96 21.45 0.30 -59.66 16 20 Si 0.94 47.71 27.47 68.60 1.88 49.60 16 21 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.26 -13.39 6.54 99.48 0.65 -12.74 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.02 0.84 7.86 -2.39 -0.02 0.82 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.82 5.98 -4.86 -0.03 1.79 16 31 H 0.05 1.28 7.36 -2.39 -0.02 1.26 16 32 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.87 5.97 -2.38 -0.01 1.86 16 39 H 0.09 3.48 8.11 -2.39 -0.02 3.46 16 40 H 0.09 3.39 7.48 -2.39 -0.02 3.37 16 41 H 0.01 0.30 7.16 -2.39 -0.02 0.28 16 42 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 43 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -73.26 331.65 4.33 -68.93 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.89 Total: 9.05 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.33 Total: -11.70 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -2.06 Total: -78.96 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.71 Total: -36.92 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.88 Total: 49.60 kcal Total: -73.26 4.33 -68.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458094601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.824 kcal (2) G-P(sol) polarization free energy of solvation -73.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds