Wall clock time and date at job start Mon Mar 30 2020 01:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47103 * 2 1 4 4 C 1.42902 * 113.99719 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46879 * 179.97438 * 4 3 2 6 6 H 1.08991 * 109.58441 * 174.48226 * 5 4 3 7 7 C 1.53191 * 109.58688 * 54.19246 * 5 4 3 8 8 C 1.53038 * 109.31506 * 185.57800 * 7 5 4 9 9 C 1.53043 * 109.53678 * 61.36715 * 8 7 5 10 10 C 1.53200 * 109.31055 * 298.63668 * 9 8 7 11 11 N 1.46927 * 109.58274 * 294.76306 * 5 4 3 12 12 C 1.34779 * 120.63411 * 353.39683 * 11 5 4 13 13 O 1.21278 * 120.00035 * 5.05397 * 12 11 5 14 14 C 1.50694 * 119.99853 * 185.05160 * 12 11 5 15 15 C 1.53006 * 109.47020 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47155 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00056 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00049 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99638 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00215 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47022 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47084 * 119.99980 * 20 18 16 23 23 H 1.48496 * 109.47377 * 240.00211 * 20 18 16 24 24 H 1.08998 * 109.47036 * 59.99762 * 1 2 3 25 25 H 1.08999 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47088 * 300.00412 * 1 2 3 27 27 H 1.09001 * 109.47340 * 240.00044 * 2 1 3 28 28 H 1.09003 * 109.47173 * 119.99516 * 2 1 3 29 29 H 1.08999 * 109.47219 * 299.99226 * 4 3 2 30 30 H 1.09004 * 109.47311 * 59.99819 * 4 3 2 31 31 H 1.09000 * 109.49891 * 305.53560 * 7 5 4 32 32 H 1.09003 * 109.49502 * 65.62530 * 7 5 4 33 33 H 1.08993 * 109.46272 * 181.39117 * 8 7 5 34 34 H 1.09005 * 109.45966 * 301.35081 * 8 7 5 35 35 H 1.08991 * 109.49525 * 58.58870 * 9 8 7 36 36 H 1.08999 * 109.49502 * 178.65561 * 9 8 7 37 37 H 1.09000 * 109.57983 * 174.41917 * 10 9 8 38 38 H 1.08994 * 109.58701 * 294.70522 * 10 9 8 39 39 H 1.08998 * 109.47299 * 299.99981 * 14 12 11 40 40 H 1.09005 * 109.47213 * 59.99913 * 14 12 11 41 41 H 1.09007 * 109.46833 * 299.99975 * 15 14 12 42 42 H 1.08992 * 109.47008 * 59.99744 * 15 14 12 43 43 H 0.97006 * 119.99336 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9384 -0.0012 6 1 4.9072 3.0279 0.0971 7 6 3.1425 3.6527 1.1693 8 6 3.4282 5.1537 1.0826 9 6 2.8548 5.7092 -0.2230 10 6 3.5345 5.0182 -1.4094 11 7 3.3917 3.5634 -1.2582 12 6 2.8697 2.8172 -2.2518 13 8 2.6692 1.6335 -2.0800 14 6 2.5352 3.4537 -3.5761 15 6 1.9611 2.3953 -4.5201 16 6 1.6272 3.0317 -5.8448 17 1 1.8061 4.0857 -5.9978 18 6 1.0933 2.2683 -6.8612 19 7 0.8750 0.9849 -6.6746 20 14 0.6786 3.0573 -8.5028 21 1 1.0160 4.5027 -8.4566 22 1 1.4627 2.4007 -9.5796 23 1 -0.7717 2.8955 -8.7775 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8340 0.9765 0.8892 30 1 3.8333 0.9766 -0.8908 31 1 2.0667 3.4837 1.1210 32 1 3.5305 3.2622 2.1101 33 1 2.9639 5.6612 1.9281 34 1 4.5052 5.3203 1.1061 35 1 1.7818 5.5209 -0.2583 36 1 3.0377 6.7826 -0.2730 37 1 3.0614 5.3374 -2.3381 38 1 4.5920 5.2815 -1.4287 39 1 1.7985 4.2426 -3.4243 40 1 3.4385 3.8794 -4.0131 41 1 2.6976 1.6061 -4.6720 42 1 1.0578 1.9700 -4.0829 43 1 0.4990 0.4479 -7.3897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458094602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:07 Heat of formation + Delta-G solvation = -85.737616 kcal Electronic energy + Delta-G solvation = -22109.255862 eV Core-core repulsion = 18961.522842 eV Total energy + Delta-G solvation = -3147.733020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.17354 -37.13449 -36.95835 -33.52985 -32.62109 -32.34717 -30.63913 -30.19849 -26.79558 -25.45532 -24.24263 -22.43809 -22.30101 -21.23310 -20.21014 -18.33454 -16.94243 -16.41081 -15.97140 -15.30525 -15.17185 -14.82925 -14.56893 -14.40257 -13.95997 -13.89057 -13.23194 -13.15545 -12.97181 -12.52613 -12.12055 -12.06196 -11.95465 -11.76661 -11.21474 -11.10925 -10.99570 -10.98058 -10.89950 -10.69863 -10.62035 -10.53231 -10.31723 -9.88653 -9.50341 -9.07497 -9.02305 -8.42289 -8.28922 -8.04117 -5.93150 -3.96721 3.33600 3.34212 3.41256 3.44137 3.46798 4.16044 4.49757 4.76110 4.81413 4.86984 5.12021 5.27468 5.35468 5.41414 5.42083 5.49360 5.55401 5.62280 5.68469 5.72345 5.77905 5.82404 5.87827 5.97319 6.01917 6.07016 6.15458 6.20980 6.31254 6.33714 6.39558 6.45915 6.49779 6.91309 7.03201 7.75940 7.79080 7.93186 7.95568 8.12049 8.44234 8.96473 9.12856 9.66569 11.17844 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.005481 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.006392 B = 5107.309068 C = 6202.389212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 O -0.366 6.366 4 C 0.070 3.930 5 C 0.151 3.849 6 H 0.075 0.925 7 C -0.128 4.128 8 C -0.117 4.117 9 C -0.135 4.135 10 C 0.111 3.889 11 N -0.619 5.619 12 C 0.513 3.487 13 O -0.509 6.509 14 C -0.128 4.128 15 C 0.040 3.960 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.026 0.974 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.775 6.077 16.820 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.006 4.006 3 O -0.285 6.285 4 C -0.007 4.007 5 C 0.047 3.953 6 H 0.092 0.908 7 C -0.166 4.166 8 C -0.155 4.155 9 C -0.174 4.174 10 C -0.013 4.013 11 N -0.356 5.356 12 C 0.303 3.697 13 O -0.383 6.383 14 C -0.168 4.168 15 C 0.002 3.998 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.465 5.414 16.799 18.476 hybrid contribution -0.057 0.286 -0.858 0.906 sum 5.408 5.699 15.941 17.772 Atomic orbital electron populations 1.21677 0.94565 1.01493 1.02643 1.22185 0.94859 0.84585 0.98988 1.87838 1.20043 1.25531 1.95049 1.22619 0.83701 0.94712 0.99658 1.21195 0.97258 0.92239 0.84577 0.90753 1.21902 1.02693 0.94787 0.97263 1.21502 1.00628 0.95907 0.97474 1.21917 1.01099 0.99469 0.94889 1.21645 1.00227 0.80091 0.99303 1.48214 1.64790 1.07326 1.15308 1.21359 0.75567 0.87185 0.85590 1.90596 1.50625 1.16134 1.80994 1.21871 1.01431 1.01642 0.91837 1.18870 0.96604 0.92543 0.91733 1.21281 1.41940 0.95303 0.97726 0.92696 1.25011 0.95814 0.94815 0.98714 1.70014 1.44451 1.05641 1.32814 0.86566 0.78018 0.79448 0.84112 1.19771 1.21065 1.21047 0.91506 0.91848 0.92906 0.92974 0.95317 0.95661 0.89974 0.90347 0.91673 0.92067 0.92199 0.91329 0.91110 0.89169 0.92076 0.90686 0.90736 0.96045 0.95844 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 37.16 0.38 -1.79 16 2 C 0.07 1.14 6.28 37.16 0.23 1.37 16 3 O -0.37 -6.46 7.25 -59.97 -0.44 -6.89 16 4 C 0.07 1.08 4.71 37.16 0.18 1.26 16 5 C 0.15 2.05 3.29 -67.60 -0.22 1.83 16 6 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 7 C -0.13 -1.49 5.26 -26.61 -0.14 -1.63 16 8 C -0.12 -1.14 5.88 -26.69 -0.16 -1.29 16 9 C -0.14 -1.40 6.08 -26.61 -0.16 -1.57 16 10 C 0.11 1.34 6.32 -3.69 -0.02 1.31 16 11 N -0.62 -9.53 2.98 -165.19 -0.49 -10.02 16 12 C 0.51 10.11 7.41 -10.99 -0.08 10.03 16 13 O -0.51 -11.41 9.74 -19.18 -0.19 -11.59 16 14 C -0.13 -2.68 4.04 -27.88 -0.11 -2.79 16 15 C 0.04 1.09 4.26 -27.88 -0.12 0.97 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 17 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.94 7.85 -51.93 -0.41 0.53 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 1.49 6.01 -52.04 -0.31 1.18 16 31 H 0.08 1.10 7.37 -51.93 -0.38 0.72 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.12 5.97 -51.93 -0.31 0.81 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.48 7.47 -51.93 -0.39 1.09 16 40 H 0.07 1.45 8.12 -51.93 -0.42 1.02 16 41 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -32.87 335.24 -8.66 -41.54 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.68 Total: -2.01 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.64 Total: -6.05 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.24 Total: -36.87 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.62 Total: -18.49 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.87 -8.66 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458094602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.202 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds