Wall clock time and date at job start Mon Mar 30 2020 01:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47103 * 2 1 4 4 C 1.42902 * 113.99719 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46879 * 179.97438 * 4 3 2 6 6 H 1.08991 * 109.58441 * 174.48226 * 5 4 3 7 7 C 1.53191 * 109.58688 * 54.19246 * 5 4 3 8 8 C 1.53038 * 109.31506 * 185.57800 * 7 5 4 9 9 C 1.53043 * 109.53678 * 61.36715 * 8 7 5 10 10 C 1.53200 * 109.31055 * 298.63668 * 9 8 7 11 11 N 1.46927 * 109.58274 * 294.76306 * 5 4 3 12 12 C 1.34779 * 120.63411 * 353.39683 * 11 5 4 13 13 O 1.21278 * 120.00035 * 5.05397 * 12 11 5 14 14 C 1.50694 * 119.99853 * 185.05160 * 12 11 5 15 15 C 1.53006 * 109.47020 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47155 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00056 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00049 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99638 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00215 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47022 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47084 * 119.99980 * 20 18 16 23 23 H 1.48496 * 109.47377 * 240.00211 * 20 18 16 24 24 H 1.08998 * 109.47036 * 59.99762 * 1 2 3 25 25 H 1.08999 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47088 * 300.00412 * 1 2 3 27 27 H 1.09001 * 109.47340 * 240.00044 * 2 1 3 28 28 H 1.09003 * 109.47173 * 119.99516 * 2 1 3 29 29 H 1.08999 * 109.47219 * 299.99226 * 4 3 2 30 30 H 1.09004 * 109.47311 * 59.99819 * 4 3 2 31 31 H 1.09000 * 109.49891 * 305.53560 * 7 5 4 32 32 H 1.09003 * 109.49502 * 65.62530 * 7 5 4 33 33 H 1.08993 * 109.46272 * 181.39117 * 8 7 5 34 34 H 1.09005 * 109.45966 * 301.35081 * 8 7 5 35 35 H 1.08991 * 109.49525 * 58.58870 * 9 8 7 36 36 H 1.08999 * 109.49502 * 178.65561 * 9 8 7 37 37 H 1.09000 * 109.57983 * 174.41917 * 10 9 8 38 38 H 1.08994 * 109.58701 * 294.70522 * 10 9 8 39 39 H 1.08998 * 109.47299 * 299.99981 * 14 12 11 40 40 H 1.09005 * 109.47213 * 59.99913 * 14 12 11 41 41 H 1.09007 * 109.46833 * 299.99975 * 15 14 12 42 42 H 1.08992 * 109.47008 * 59.99744 * 15 14 12 43 43 H 0.97006 * 119.99336 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9384 -0.0012 6 1 4.9072 3.0279 0.0971 7 6 3.1425 3.6527 1.1693 8 6 3.4282 5.1537 1.0826 9 6 2.8548 5.7092 -0.2230 10 6 3.5345 5.0182 -1.4094 11 7 3.3917 3.5634 -1.2582 12 6 2.8697 2.8172 -2.2518 13 8 2.6692 1.6335 -2.0800 14 6 2.5352 3.4537 -3.5761 15 6 1.9611 2.3953 -4.5201 16 6 1.6272 3.0317 -5.8448 17 1 1.8061 4.0857 -5.9978 18 6 1.0933 2.2683 -6.8612 19 7 0.8750 0.9849 -6.6746 20 14 0.6786 3.0573 -8.5028 21 1 1.0160 4.5027 -8.4566 22 1 1.4627 2.4007 -9.5796 23 1 -0.7717 2.8955 -8.7775 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8340 0.9765 0.8892 30 1 3.8333 0.9766 -0.8908 31 1 2.0667 3.4837 1.1210 32 1 3.5305 3.2622 2.1101 33 1 2.9639 5.6612 1.9281 34 1 4.5052 5.3203 1.1061 35 1 1.7818 5.5209 -0.2583 36 1 3.0377 6.7826 -0.2730 37 1 3.0614 5.3374 -2.3381 38 1 4.5920 5.2815 -1.4287 39 1 1.7985 4.2426 -3.4243 40 1 3.4385 3.8794 -4.0131 41 1 2.6976 1.6061 -4.6720 42 1 1.0578 1.9700 -4.0829 43 1 0.4990 0.4479 -7.3897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458094602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:07 Heat of formation + Delta-G solvation = -105.500432 kcal Electronic energy + Delta-G solvation = -22110.112842 eV Core-core repulsion = 18961.522842 eV Total energy + Delta-G solvation = -3148.590000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47776 -38.52124 -38.14204 -35.59154 -33.96729 -33.49797 -32.49237 -31.40353 -28.21590 -27.19985 -25.32768 -24.04842 -23.63335 -22.48165 -21.47542 -19.73054 -18.69537 -17.80320 -17.58434 -16.69108 -16.53265 -16.39617 -16.18075 -15.61886 -15.07528 -14.97201 -14.67294 -14.48413 -14.34118 -13.99120 -13.79583 -13.50193 -13.16159 -13.14792 -12.85682 -12.80525 -12.44102 -12.30852 -12.16899 -12.01200 -11.90006 -11.74128 -11.58642 -11.46322 -11.36165 -11.20573 -10.57688 -10.40176 -9.86524 -9.30775 -8.18215 -6.32016 1.40821 1.42393 1.55670 1.88090 2.15811 2.43035 2.96337 3.14703 3.72292 3.89194 3.98678 4.13714 4.16370 4.23124 4.30925 4.35620 4.39684 4.49882 4.51837 4.53845 4.56307 4.64944 4.77014 4.84640 4.91512 4.99478 5.05071 5.05364 5.11426 5.19339 5.21374 5.27309 5.28148 5.49117 5.56483 5.65355 5.80997 5.87086 6.19017 6.50075 6.58804 6.86976 7.37770 7.50454 8.94586 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.005481 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.006392 B = 5107.309068 C = 6202.389212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 O -0.384 6.384 4 C 0.067 3.933 5 C 0.146 3.854 6 H 0.103 0.897 7 C -0.121 4.121 8 C -0.113 4.113 9 C -0.131 4.131 10 C 0.101 3.899 11 N -0.611 5.611 12 C 0.505 3.495 13 O -0.548 6.548 14 C -0.115 4.115 15 C 0.051 3.949 16 C -0.542 4.542 17 H 0.072 0.928 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.973 3.027 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.280 1.280 24 H 0.031 0.969 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.019 0.981 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.094 0.906 41 H -0.019 1.019 42 H -0.022 1.022 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.873 8.860 17.942 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.009 4.009 3 O -0.304 6.304 4 C -0.010 4.010 5 C 0.043 3.957 6 H 0.121 0.879 7 C -0.159 4.159 8 C -0.150 4.150 9 C -0.170 4.170 10 C -0.021 4.021 11 N -0.346 5.346 12 C 0.295 3.705 13 O -0.426 6.426 14 C -0.155 4.155 15 C 0.013 3.987 16 C -0.580 4.580 17 H 0.090 0.910 18 C -0.203 4.203 19 N -0.577 5.577 20 Si 0.796 3.204 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.206 1.206 24 H 0.050 0.950 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.113 0.887 41 H -0.001 1.001 42 H -0.003 1.003 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.588 8.253 17.957 20.832 hybrid contribution -0.364 -0.615 -1.141 1.346 sum 6.225 7.638 16.816 19.490 Atomic orbital electron populations 1.21657 0.93825 1.02672 1.01623 1.22245 0.95564 0.84302 0.98742 1.87809 1.21372 1.26137 1.95064 1.22671 0.82675 0.96420 0.99212 1.21486 0.98932 0.90989 0.84290 0.87945 1.21838 1.00630 0.96406 0.97039 1.21504 1.02008 0.94040 0.97446 1.21906 0.99583 1.00975 0.94490 1.21978 1.02192 0.77812 1.00116 1.48175 1.62989 1.08661 1.14823 1.21101 0.76266 0.86918 0.86218 1.90619 1.52526 1.17698 1.81716 1.21606 1.02243 0.99822 0.91849 1.18604 0.93793 0.93149 0.93117 1.21742 1.41793 0.96181 0.98265 0.90964 1.26114 0.95428 0.95260 1.03485 1.70193 1.45440 1.07658 1.34450 0.85293 0.77708 0.79231 0.78138 1.17679 1.20494 1.20599 0.94997 0.89642 0.91226 0.96260 0.92349 0.92966 0.93438 0.93236 0.89555 0.90529 0.90128 0.93462 0.88279 0.89723 0.89282 0.89277 0.88750 1.00079 1.00310 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 10.28 71.98 0.74 -3.60 16 2 C 0.07 2.30 6.28 71.98 0.45 2.75 16 3 O -0.38 -14.03 7.25 -125.32 -0.91 -14.94 16 4 C 0.07 2.09 4.71 71.98 0.34 2.43 16 5 C 0.15 3.71 3.29 44.98 0.15 3.86 16 6 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 7 C -0.12 -2.51 5.26 30.67 0.16 -2.35 16 8 C -0.11 -1.73 5.88 30.62 0.18 -1.55 16 9 C -0.13 -2.31 6.08 30.68 0.19 -2.13 16 10 C 0.10 2.17 6.32 86.36 0.55 2.72 16 11 N -0.61 -18.26 2.98 -794.93 -2.37 -20.63 16 12 C 0.51 20.61 7.41 87.65 0.65 21.26 16 13 O -0.55 -26.31 9.74 20.63 0.20 -26.11 16 14 C -0.12 -4.95 4.04 29.85 0.12 -4.83 16 15 C 0.05 2.93 4.26 29.85 0.13 3.06 16 16 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 17 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 18 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 19 N -0.94 -60.41 13.29 21.45 0.28 -60.13 16 20 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 21 H -0.25 -10.85 7.11 99.48 0.71 -10.15 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.02 0.76 7.85 -2.39 -0.02 0.74 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.82 6.01 -4.15 -0.02 1.80 16 31 H 0.05 1.33 7.37 -2.39 -0.02 1.32 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.92 5.97 -2.39 -0.01 1.90 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 3.53 7.47 -2.39 -0.02 3.51 16 40 H 0.09 3.63 8.12 -2.38 -0.02 3.61 16 41 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 42 H -0.02 -1.41 8.10 -2.39 -0.02 -1.43 16 43 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -76.80 335.24 4.52 -72.28 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.94 Total: 12.12 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 4.35 Total: -9.70 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -2.08 Total: -80.76 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.71 Total: -41.05 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.80 4.52 -72.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458094602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.223 kcal (2) G-P(sol) polarization free energy of solvation -76.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds