Wall clock time and date at job start Mon Mar 30 2020 00:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47011 * 2 1 4 4 C 1.53002 * 109.46851 * 119.99908 * 2 1 3 5 5 O 1.42902 * 109.47191 * 182.25713 * 4 2 1 6 6 N 1.46493 * 109.47069 * 239.99775 * 2 1 3 7 7 C 1.46501 * 120.00090 * 303.74508 * 6 2 1 8 8 C 1.53007 * 109.47188 * 269.99867 * 7 6 2 9 9 C 1.53783 * 113.61561 * 274.14051 * 8 7 6 10 10 C 1.53955 * 87.01434 * 220.04687 * 9 8 7 11 11 C 1.53777 * 113.61623 * 176.52627 * 8 7 6 12 12 C 1.34773 * 120.00042 * 123.74712 * 6 2 1 13 13 O 1.21279 * 120.00288 * 184.73064 * 12 6 2 14 14 C 1.50703 * 119.99936 * 4.72550 * 12 6 2 15 15 C 1.53005 * 109.47129 * 174.82782 * 14 12 6 16 16 C 1.50693 * 109.47074 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00207 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00243 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99819 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00485 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46913 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47247 * 120.00241 * 20 18 16 23 23 H 1.48495 * 109.47472 * 240.00502 * 20 18 16 24 24 H 1.08998 * 109.47199 * 175.92161 * 1 2 3 25 25 H 1.09002 * 109.46940 * 295.91862 * 1 2 3 26 26 H 1.08997 * 109.46683 * 55.91687 * 1 2 3 27 27 H 1.08998 * 109.47236 * 302.25418 * 4 2 1 28 28 H 1.09000 * 109.47525 * 62.25457 * 4 2 1 29 29 H 0.96698 * 114.00029 * 180.02562 * 5 4 2 30 30 H 1.08999 * 109.47191 * 30.00000 * 7 6 2 31 31 H 1.09000 * 109.47241 * 150.00466 * 7 6 2 32 32 H 1.09002 * 112.84362 * 45.33304 * 8 7 6 33 33 H 1.08998 * 113.60868 * 334.56280 * 9 8 7 34 34 H 1.08991 * 113.61483 * 105.46730 * 9 8 7 35 35 H 1.09004 * 113.53442 * 270.80271 * 10 9 8 36 36 H 1.09002 * 113.66446 * 139.93292 * 10 9 8 37 37 H 1.08995 * 113.61955 * 254.53041 * 11 8 7 38 38 H 1.09001 * 113.61087 * 25.35705 * 11 8 7 39 39 H 1.09000 * 109.47327 * 294.82560 * 14 12 6 40 40 H 1.09002 * 109.46855 * 54.82922 * 14 12 6 41 41 H 1.09000 * 109.46835 * 300.00080 * 15 14 12 42 42 H 1.08997 * 109.46949 * 59.99598 * 15 14 12 43 43 H 0.97000 * 120.00411 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4680 -0.6755 1.2762 6 7 2.0183 -0.6906 -1.1961 7 6 1.5980 -2.0670 -1.4701 8 6 2.5826 -3.0403 -0.8186 9 6 3.8069 -3.3563 -1.6940 10 6 3.6746 -4.8126 -1.2123 11 6 2.1841 -4.5172 -0.9757 12 6 2.8543 -0.0598 -2.0444 13 8 3.1906 -0.5989 -3.0774 14 6 3.3711 1.3156 -1.7094 15 6 4.3924 1.7475 -2.7637 16 6 4.9087 3.1231 -2.4291 17 1 4.5451 3.6377 -1.5520 18 6 5.8460 3.7243 -3.2421 19 7 6.2891 3.0974 -4.3100 20 14 6.4866 5.4292 -2.8269 21 1 5.8349 5.9136 -1.5836 22 1 7.9564 5.3699 -2.6241 23 1 6.1780 6.3593 -3.9427 24 1 -0.3633 -1.0250 -0.0731 25 1 -0.3633 0.4492 0.9243 26 1 -0.3632 0.5759 -0.8511 27 1 1.6440 -0.2313 2.1388 28 1 1.7100 -1.7599 1.2294 29 1 3.8612 -1.1149 2.0426 30 1 0.6010 -2.2307 -1.0612 31 1 1.5810 -2.2342 -2.5471 32 1 2.8372 -2.7632 0.2044 33 1 3.6243 -3.2311 -2.7613 34 1 4.7211 -2.8661 -1.3595 35 1 4.2292 -5.0205 -0.2973 36 1 3.8548 -5.5501 -1.9945 37 1 1.7903 -4.9628 -0.0623 38 1 1.5561 -4.7097 -1.8456 39 1 2.5414 2.0224 -1.6965 40 1 3.8471 1.2961 -0.7290 41 1 5.2221 1.0407 -2.7767 42 1 3.9164 1.7669 -3.7441 43 1 6.9482 3.5205 -4.8822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487460857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:09 Heat of formation + Delta-G solvation = -104.070138 kcal Electronic energy + Delta-G solvation = -21916.735229 eV Core-core repulsion = 18768.207251 eV Total energy + Delta-G solvation = -3148.527978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32720 -39.34936 -38.25268 -36.25796 -35.59235 -33.07468 -32.21844 -29.74829 -27.41009 -26.99681 -26.42984 -24.42118 -23.16927 -22.43358 -20.36227 -19.60072 -18.90465 -18.21001 -17.70356 -17.00772 -16.70775 -16.47982 -16.16064 -15.64681 -15.40008 -15.10973 -14.56242 -14.21849 -14.15640 -13.77959 -13.45394 -13.31680 -13.27009 -13.11109 -12.91957 -12.85092 -12.53066 -12.46390 -12.27434 -11.96212 -11.94331 -11.60005 -11.45450 -11.29656 -11.28703 -11.05551 -10.76126 -10.59156 -10.52529 -9.49072 -8.18926 -6.33431 1.40010 1.42456 1.55845 1.77547 2.11362 2.42375 3.13515 3.33853 3.66324 3.79409 3.83460 3.87654 4.00100 4.13197 4.22047 4.40652 4.41797 4.47755 4.53749 4.56865 4.65690 4.69170 4.72380 4.85354 4.88590 4.90644 4.93691 5.04920 5.10144 5.12883 5.15962 5.33377 5.37913 5.46354 5.61359 5.63340 5.79073 5.84689 6.17185 6.48715 6.84473 7.00693 7.35605 7.38954 8.94296 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.004970 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.874457 B = 5632.837745 C = 6214.945226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.117 3.883 3 H 0.088 0.912 4 C 0.065 3.935 5 O -0.590 6.590 6 N -0.596 5.596 7 C 0.119 3.881 8 C -0.121 4.121 9 C -0.144 4.144 10 C -0.135 4.135 11 C -0.117 4.117 12 C 0.515 3.485 13 O -0.585 6.585 14 C -0.114 4.114 15 C 0.048 3.952 16 C -0.542 4.542 17 H 0.072 0.928 18 C -0.007 4.007 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.278 1.278 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.392 0.608 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.091 0.909 41 H -0.024 1.024 42 H -0.019 1.019 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.352 -12.935 16.595 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.014 3.986 3 H 0.106 0.894 4 C -0.013 4.013 5 O -0.398 6.398 6 N -0.328 5.328 7 C -0.003 4.003 8 C -0.140 4.140 9 C -0.182 4.182 10 C -0.172 4.172 11 C -0.154 4.154 12 C 0.305 3.695 13 O -0.465 6.465 14 C -0.153 4.153 15 C 0.010 3.990 16 C -0.579 4.579 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.203 1.203 24 H 0.095 0.905 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.241 0.759 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.110 0.890 41 H -0.006 1.006 42 H 0.000 1.000 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.188 -12.879 15.373 24.566 hybrid contribution 1.066 0.558 -0.159 1.214 sum -13.122 -12.320 15.214 23.568 Atomic orbital electron populations 1.22059 0.91353 1.03755 1.03963 1.21585 0.96072 0.97362 0.83556 0.89393 1.22717 0.81204 1.00450 0.96975 1.86612 1.20496 1.81471 1.51242 1.47929 1.46648 1.14254 1.23957 1.21570 0.98640 0.79961 1.00121 1.23094 0.95543 0.95346 1.00004 1.22887 0.98285 0.98035 0.98991 1.22844 0.97773 0.95064 1.01515 1.22814 0.95896 0.93726 1.02999 1.21137 0.77521 0.88290 0.82578 1.90613 1.59378 1.69056 1.27454 1.21566 0.99933 0.92512 1.01317 1.18639 0.92517 0.94883 0.92924 1.21702 1.23767 1.01954 1.10510 0.90952 1.26164 0.96642 1.02966 0.94635 1.70197 1.31462 1.40169 1.16036 0.85242 0.77974 0.78040 0.78796 1.17624 1.20475 1.20337 0.90519 0.88448 0.92508 0.90121 0.91621 0.75899 0.87310 0.92812 0.87780 0.92835 0.95106 0.89328 0.91398 0.88953 0.89842 0.88905 0.89037 1.00592 1.00044 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.19 71.98 0.66 -1.56 16 2 C 0.12 2.58 2.80 45.00 0.13 2.70 16 3 H 0.09 2.24 5.83 -2.39 -0.01 2.22 16 4 C 0.06 1.07 5.71 71.98 0.41 1.48 16 5 O -0.59 -13.39 12.86 -148.98 -1.92 -15.30 16 6 N -0.60 -18.09 2.30 -797.84 -1.84 -19.93 16 7 C 0.12 3.05 4.78 86.38 0.41 3.46 16 8 C -0.12 -2.84 3.53 -10.27 -0.04 -2.87 16 9 C -0.14 -4.46 7.28 31.18 0.23 -4.24 16 10 C -0.13 -2.87 8.09 31.18 0.25 -2.62 16 11 C -0.12 -2.03 7.65 31.12 0.24 -1.79 16 12 C 0.51 22.29 7.66 87.66 0.67 22.96 16 13 O -0.59 -30.80 15.03 -3.03 -0.05 -30.85 16 14 C -0.11 -5.20 3.96 29.85 0.12 -5.08 16 15 C 0.05 2.89 4.28 29.85 0.13 3.01 16 16 C -0.54 -32.65 9.11 25.60 0.23 -32.42 16 17 H 0.07 4.02 7.74 -2.91 -0.02 3.99 16 18 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 19 N -0.94 -61.79 13.29 21.45 0.28 -61.50 16 20 Si 0.98 45.91 29.54 68.60 2.03 47.94 16 21 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H 0.08 0.88 6.37 -2.39 -0.02 0.87 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.87 6.15 -2.39 -0.01 0.85 16 29 H 0.39 5.21 9.12 -74.06 -0.68 4.54 16 30 H 0.11 1.90 6.16 -2.39 -0.01 1.89 16 31 H 0.05 1.71 7.09 -2.39 -0.02 1.69 16 32 H 0.10 2.26 5.08 -2.39 -0.01 2.25 16 33 H 0.05 1.98 7.78 -2.39 -0.02 1.96 16 34 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 39 H 0.09 3.82 7.76 -2.39 -0.02 3.80 16 40 H 0.09 4.00 7.81 -2.39 -0.02 3.98 16 41 H -0.02 -1.66 8.14 -2.39 -0.02 -1.68 16 42 H -0.02 -1.27 8.04 -2.39 -0.02 -1.29 16 43 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -83.93 340.30 2.73 -81.20 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.31 Total: 15.35 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 3.90 Total: -16.91 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.55 Total: -81.43 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.96 Total: -46.15 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -83.93 2.73 -81.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487460857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.866 kcal (2) G-P(sol) polarization free energy of solvation -83.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds