Wall clock time and date at job start Mon Mar 30 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20762 * 119.99756 * 2 1 4 4 C 1.50696 * 119.99835 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47241 * 89.99702 * 4 2 1 6 6 O 1.42906 * 109.47135 * 329.99641 * 4 2 1 7 7 C 1.53003 * 109.47020 * 209.99842 * 4 2 1 8 8 N 1.46901 * 109.47160 * 60.81724 * 7 4 2 9 9 C 1.46845 * 110.99961 * 207.08102 * 8 7 4 10 10 C 1.53041 * 109.51266 * 174.16396 * 9 8 7 11 11 C 1.53101 * 109.28758 * 59.19202 * 10 9 8 12 12 C 1.53003 * 109.52486 * 182.43778 * 11 10 9 13 13 C 1.50701 * 109.46640 * 294.67054 * 12 11 10 14 14 H 1.07997 * 119.99977 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99988 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99946 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00151 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46957 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46907 * 120.00483 * 17 15 13 20 20 H 1.48504 * 109.47420 * 240.00121 * 17 15 13 21 21 C 1.53121 * 109.15133 * 302.33259 * 11 10 9 22 22 C 1.46849 * 110.99640 * 82.87289 * 8 7 4 23 23 H 1.09001 * 109.47385 * 239.99743 * 1 2 3 24 24 H 1.09004 * 109.47345 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47131 * 119.99751 * 1 2 3 26 26 H 1.08999 * 109.46967 * 175.12907 * 5 4 2 27 27 H 1.08996 * 109.47351 * 295.13474 * 5 4 2 28 28 H 1.08998 * 109.46912 * 55.13390 * 5 4 2 29 29 H 0.96696 * 113.99616 * 313.49218 * 6 4 2 30 30 H 1.09000 * 109.46862 * 300.82054 * 7 4 2 31 31 H 1.08999 * 109.47024 * 180.81775 * 7 4 2 32 32 H 1.08993 * 109.46408 * 294.17693 * 9 8 7 33 33 H 1.09006 * 109.46249 * 54.16140 * 9 8 7 34 34 H 1.09002 * 109.50384 * 179.11647 * 10 9 8 35 35 H 1.08993 * 109.50495 * 299.23870 * 10 9 8 36 36 H 1.08994 * 109.58190 * 62.26791 * 11 10 9 37 37 H 1.08996 * 109.47222 * 54.67179 * 12 11 10 38 38 H 1.08997 * 109.46921 * 174.67328 * 12 11 10 39 39 H 0.97003 * 119.99451 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.50687 * 297.71862 * 21 11 10 41 41 H 1.09004 * 109.53637 * 177.61576 * 21 11 10 42 42 H 1.09000 * 109.46530 * 305.85370 * 22 8 7 43 43 H 1.08999 * 109.46529 * 65.83889 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 2.5154 -1.7462 -1.4432 6 8 1.4881 -2.3013 0.6727 7 6 3.5974 -1.1225 0.7207 8 7 3.3522 -0.7179 2.1115 9 6 4.4787 0.0624 2.6390 10 6 4.1282 0.5881 4.0329 11 6 3.8247 -0.5937 4.9576 12 6 3.4145 -0.0721 6.3362 13 6 4.5832 0.6336 6.9743 14 1 5.5242 0.7035 6.4489 15 6 4.4509 1.1910 8.2284 16 7 3.3048 1.1063 8.8680 17 14 5.8997 2.0652 9.0196 18 1 7.0656 2.0221 8.1009 19 1 5.5362 3.4791 9.2915 20 1 6.2488 1.3898 10.2953 21 6 2.6801 -1.4174 4.3609 22 6 3.0724 -1.8852 2.9575 23 1 -0.3634 -0.5139 0.8899 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 3.1342 -2.6435 -1.4448 27 1 1.5645 -1.9596 -1.9314 28 1 3.0292 -0.9496 -1.9813 29 1 1.1146 -2.0068 1.5146 30 1 4.1804 -0.3523 0.2158 31 1 4.1487 -2.0627 0.7076 32 1 5.3624 -0.5725 2.7019 33 1 4.6815 0.9024 1.9745 34 1 4.9705 1.1541 4.4308 35 1 3.2528 1.2342 3.9686 36 1 4.7120 -1.2194 5.0540 37 1 2.5837 0.6251 6.2285 38 1 3.1079 -0.9084 6.9645 39 1 3.2118 1.4981 9.7505 40 1 1.7818 -0.8028 4.3017 41 1 2.4870 -2.2844 4.9927 42 1 2.2538 -2.4600 2.5242 43 1 3.9628 -2.5109 3.0191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516056844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:37 Heat of formation + Delta-G solvation = -120.996633 kcal Electronic energy + Delta-G solvation = -21835.197799 eV Core-core repulsion = 18685.935833 eV Total energy + Delta-G solvation = -3149.261966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34450 -39.75569 -37.94829 -35.89982 -34.24310 -32.68871 -31.68837 -30.89816 -29.76809 -27.05536 -25.20714 -23.97278 -23.72929 -22.27134 -20.59561 -20.45236 -18.44825 -18.37561 -17.10677 -16.81097 -16.52721 -16.06508 -15.84978 -15.48945 -15.13197 -14.83240 -14.48731 -14.40876 -14.09864 -13.87599 -13.62553 -13.47175 -13.27550 -13.07869 -13.06890 -12.87838 -12.77903 -12.63153 -12.55981 -12.39805 -12.22403 -12.05711 -11.76985 -11.39541 -11.25296 -10.91035 -10.56853 -10.53344 -10.26299 -9.27612 -8.18483 -6.27784 1.03281 1.37788 1.38440 1.51098 2.40630 2.84090 2.94285 3.14751 3.23045 3.75607 3.96427 4.02680 4.09030 4.17066 4.21701 4.35169 4.46788 4.54085 4.62127 4.63187 4.66481 4.68878 4.77755 4.82398 4.83810 4.85917 4.98572 5.07819 5.12731 5.19185 5.24135 5.36519 5.40291 5.43198 5.56793 5.79790 5.88127 6.07272 6.15832 6.29708 6.43403 6.71514 6.88387 7.40603 8.93552 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033484 B = 0.004058 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.027197 B = 6897.901650 C = 6933.084474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.342 3.658 3 O -0.481 6.481 4 C 0.101 3.899 5 C -0.135 4.135 6 O -0.546 6.546 7 C 0.036 3.964 8 N -0.545 5.545 9 C 0.070 3.930 10 C -0.092 4.092 11 C -0.075 4.075 12 C 0.034 3.966 13 C -0.530 4.530 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.959 3.041 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.278 1.278 21 C -0.107 4.107 22 C 0.054 3.946 23 H 0.105 0.895 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.388 0.612 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.046 0.954 37 H -0.013 1.013 38 H -0.012 1.012 39 H 0.262 0.738 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -7.581 -21.337 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.218 3.782 3 O -0.355 6.355 4 C 0.059 3.941 5 C -0.193 4.193 6 O -0.356 6.356 7 C -0.092 4.092 8 N -0.270 5.270 9 C -0.058 4.058 10 C -0.130 4.130 11 C -0.093 4.093 12 C -0.003 4.003 13 C -0.568 4.568 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.784 3.216 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.204 1.204 21 C -0.145 4.145 22 C -0.073 4.073 23 H 0.124 0.876 24 H 0.093 0.907 25 H 0.134 0.866 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.240 0.760 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.126 0.874 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.885 -7.025 -21.687 23.125 hybrid contribution 1.145 0.549 1.648 2.080 sum -2.739 -6.475 -20.039 21.237 Atomic orbital electron populations 1.22282 0.92302 1.04931 1.06240 1.25664 0.93503 0.90199 0.68813 1.90403 1.72915 1.35979 1.36236 1.21807 0.90134 0.86998 0.95181 1.21740 1.04223 1.02989 0.90313 1.86562 1.70027 1.39551 1.39507 1.22684 0.96785 1.00812 0.88941 1.61864 1.40931 1.22269 1.01910 1.22000 0.91238 0.96906 0.95627 1.21383 1.00581 0.97488 0.93508 1.21080 0.97377 0.95968 0.94896 1.19001 0.95076 0.94139 0.92037 1.21680 0.98589 1.34898 1.01628 0.92429 1.25929 0.98524 0.97281 0.98092 1.70109 1.26260 1.46872 1.14279 0.85486 0.79552 0.78144 0.78408 1.18734 1.20560 1.20369 1.21627 0.98124 0.99345 0.95424 1.22459 1.01181 0.91000 0.92654 0.87622 0.90723 0.86605 0.89942 0.89590 0.90501 0.75971 0.90208 0.92144 0.94842 0.91063 0.92853 0.93714 0.93516 0.99448 0.99329 0.92935 0.92329 0.91567 0.87388 0.95074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.99 9.70 71.24 0.69 -2.30 16 2 C 0.34 7.28 5.69 29.10 0.17 7.45 16 3 O -0.48 -14.27 16.86 -1.46 -0.02 -14.29 16 4 C 0.10 1.84 1.11 -11.54 -0.01 1.83 16 5 C -0.14 -1.78 8.83 71.98 0.64 -1.15 16 6 O -0.55 -9.23 11.10 -148.98 -1.65 -10.89 16 7 C 0.04 0.80 3.99 86.30 0.34 1.14 16 8 N -0.54 -14.79 4.07 -896.33 -3.65 -18.44 16 9 C 0.07 2.20 5.39 86.33 0.46 2.67 16 10 C -0.09 -3.61 5.15 30.64 0.16 -3.45 16 11 C -0.07 -3.10 2.20 -10.72 -0.02 -3.13 16 12 C 0.03 1.85 4.45 29.85 0.13 1.98 16 13 C -0.53 -30.53 8.45 25.60 0.22 -30.31 16 14 H 0.06 3.21 7.08 -2.91 -0.02 3.19 16 15 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 16 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 17 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 C -0.11 -3.57 5.38 30.65 0.16 -3.40 16 22 C 0.05 1.41 4.94 86.33 0.43 1.83 16 23 H 0.11 1.33 7.46 -2.39 -0.02 1.31 16 24 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 25 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.39 5.93 6.00 -74.06 -0.44 5.49 16 30 H 0.08 1.86 7.36 -2.39 -0.02 1.84 16 31 H 0.06 1.24 7.89 -2.39 -0.02 1.22 16 32 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.07 2.20 7.90 -2.38 -0.02 2.18 16 34 H 0.05 2.26 7.05 -2.39 -0.02 2.24 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.11 2.22 4.61 -2.39 -0.01 2.21 16 43 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -69.61 336.40 1.34 -68.27 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.53 Total: 12.09 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.83 Total: -26.44 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -3.36 Total: -75.99 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.68 Total: -25.18 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -69.61 1.34 -68.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516056844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.729 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds