Wall clock time and date at job start Mon Mar 30 2020 01:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20759 * 119.99728 * 2 1 4 4 C 1.50697 * 119.99834 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.46955 * 274.99821 * 4 2 1 6 6 O 1.42895 * 109.47275 * 34.99690 * 4 2 1 7 7 C 1.53004 * 109.47029 * 155.00237 * 4 2 1 8 8 N 1.46894 * 109.46870 * 171.61965 * 7 4 2 9 9 C 1.46856 * 110.99847 * 176.56765 * 8 7 4 10 10 C 1.53036 * 109.51392 * 174.16582 * 9 8 7 11 11 C 1.53097 * 109.29307 * 59.17878 * 10 9 8 12 12 C 1.53000 * 109.57451 * 182.40448 * 11 10 9 13 13 C 1.50704 * 109.47305 * 294.70838 * 12 11 10 14 14 H 1.08001 * 119.99592 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00224 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99860 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00058 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47135 * 59.99905 * 17 15 13 19 19 H 1.48500 * 109.47285 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47234 * 299.99856 * 17 15 13 21 21 C 1.53114 * 109.15421 * 302.34023 * 11 10 9 22 22 C 1.46845 * 111.00620 * 52.35033 * 8 7 4 23 23 H 1.08999 * 109.46997 * 240.00112 * 1 2 3 24 24 H 1.09001 * 109.46961 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47234 * 119.99771 * 1 2 3 26 26 H 1.08996 * 109.46977 * 299.99955 * 5 4 2 27 27 H 1.08996 * 109.46956 * 60.00335 * 5 4 2 28 28 H 1.09000 * 109.46802 * 179.97438 * 5 4 2 29 29 H 0.96706 * 113.99749 * 60.00086 * 6 4 2 30 30 H 1.08997 * 109.47054 * 51.61480 * 7 4 2 31 31 H 1.09000 * 109.46703 * 291.61760 * 7 4 2 32 32 H 1.09005 * 109.45895 * 294.17189 * 9 8 7 33 33 H 1.08992 * 109.46544 * 54.14766 * 9 8 7 34 34 H 1.09000 * 109.49813 * 179.11434 * 10 9 8 35 35 H 1.09003 * 109.49757 * 299.22395 * 10 9 8 36 36 H 1.08999 * 109.52466 * 62.24251 * 11 10 9 37 37 H 1.08996 * 109.47421 * 54.71196 * 12 11 10 38 38 H 1.09004 * 109.46986 * 174.71266 * 12 11 10 39 39 H 0.97000 * 120.00087 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.50326 * 297.71155 * 21 11 10 41 41 H 1.09007 * 109.53232 * 177.61843 * 21 11 10 42 42 H 1.08999 * 109.46418 * 305.86038 * 22 8 7 43 43 H 1.09000 * 109.45803 * 65.83571 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 2.4066 -1.8102 1.4363 6 8 1.5429 -2.2691 -0.7737 7 6 3.6478 -1.0928 -0.6101 8 7 4.4529 -2.3081 -0.4297 9 6 5.7651 -2.1706 -1.0747 10 6 6.6275 -3.3909 -0.7444 11 6 5.9241 -4.6567 -1.2412 12 6 6.7522 -5.8859 -0.8613 13 6 8.0663 -5.8537 -1.5983 14 1 8.2888 -5.0379 -2.2700 15 6 8.9846 -6.8658 -1.4149 16 7 8.7138 -7.8589 -0.5964 17 14 10.6138 -6.8254 -2.3278 18 1 11.3579 -5.5946 -1.9583 19 1 11.4175 -8.0185 -1.9591 20 1 10.3615 -6.8308 -3.7911 21 6 4.5409 -4.7507 -0.5915 22 6 3.7387 -3.4913 -0.9261 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 2.9540 -1.0749 2.0260 27 1 1.4184 -1.9615 1.8705 28 1 2.9512 -2.7544 1.4358 29 1 1.4127 -2.0143 -1.6975 30 1 4.1381 -0.2551 -0.1143 31 1 3.5480 -0.8775 -1.6739 32 1 5.6334 -2.1004 -2.1545 33 1 6.2566 -1.2689 -0.7095 34 1 7.5957 -3.2960 -1.2361 35 1 6.7711 -3.4537 0.3343 36 1 5.8152 -4.6116 -2.3248 37 1 6.9377 -5.8813 0.2127 38 1 6.2060 -6.7897 -1.1318 39 1 9.3597 -8.5711 -0.4677 40 1 4.6516 -4.8351 0.4896 41 1 4.0177 -5.6276 -0.9732 42 1 2.7583 -3.5486 -0.4531 43 1 3.6167 -3.4150 -2.0066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516056845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:39 Heat of formation + Delta-G solvation = -115.786028 kcal Electronic energy + Delta-G solvation = -21638.274065 eV Core-core repulsion = 18489.238048 eV Total energy + Delta-G solvation = -3149.036017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49169 -39.89529 -38.05619 -35.87101 -34.25229 -32.46678 -31.66634 -30.87143 -29.59056 -27.37704 -25.43362 -23.94044 -23.51769 -22.09835 -20.58254 -20.41303 -18.43756 -18.40327 -16.91896 -16.83251 -16.57361 -16.25289 -15.81619 -15.54953 -15.19820 -15.06988 -14.62468 -14.55029 -14.01172 -13.77916 -13.68022 -13.37118 -13.16810 -13.10261 -12.99921 -12.92583 -12.66375 -12.63738 -12.50788 -12.24185 -12.09844 -12.02528 -11.71396 -11.51664 -11.22978 -10.87560 -10.71292 -10.51472 -10.02236 -9.21140 -8.16937 -6.26814 0.80449 1.38899 1.41811 1.49496 2.41685 2.65912 3.12404 3.15559 3.23316 3.66557 3.89992 4.04658 4.12206 4.15735 4.18264 4.41572 4.54562 4.56449 4.62702 4.69226 4.70954 4.73583 4.82122 4.87711 4.91110 4.91813 5.10655 5.15391 5.17773 5.23898 5.37137 5.41997 5.45838 5.50571 5.60781 5.81916 5.90003 6.15090 6.21884 6.30633 6.35656 6.70461 6.89236 7.41401 8.94764 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046517 B = 0.003669 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.790288 B = 7629.240357 C = 7911.841772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.343 3.657 3 O -0.486 6.486 4 C 0.099 3.901 5 C -0.130 4.130 6 O -0.536 6.536 7 C 0.039 3.961 8 N -0.534 5.534 9 C 0.064 3.936 10 C -0.092 4.092 11 C -0.075 4.075 12 C 0.035 3.965 13 C -0.532 4.532 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.960 3.040 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.108 4.108 22 C 0.049 3.951 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.391 0.609 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.044 0.956 37 H -0.013 1.013 38 H -0.015 1.015 39 H 0.262 0.738 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.131 0.869 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.212 15.327 0.177 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.219 3.781 3 O -0.361 6.361 4 C 0.057 3.943 5 C -0.187 4.187 6 O -0.345 6.345 7 C -0.090 4.090 8 N -0.259 5.259 9 C -0.063 4.063 10 C -0.130 4.130 11 C -0.094 4.094 12 C -0.002 4.002 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.785 3.215 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.146 4.146 22 C -0.077 4.077 23 H 0.129 0.871 24 H 0.099 0.901 25 H 0.135 0.865 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.242 0.758 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.005 0.995 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.148 0.852 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.747 15.350 1.299 23.500 hybrid contribution 1.229 -0.155 -1.705 2.107 sum -16.518 15.195 -0.406 22.447 Atomic orbital electron populations 1.22254 0.90887 1.05250 1.06748 1.25823 0.94184 0.89395 0.68663 1.90429 1.73118 1.35913 1.36641 1.21668 0.89507 0.87902 0.95186 1.21666 1.03312 1.03057 0.90638 1.86596 1.76908 1.44016 1.26975 1.22586 0.94076 0.93223 0.99074 1.61960 1.02938 1.02754 1.58242 1.22041 0.90057 0.98216 0.96035 1.21385 0.97752 0.93526 1.00334 1.21091 0.94914 0.95299 0.98059 1.18999 0.93910 0.92700 0.94627 1.21636 1.02356 1.07288 1.25688 0.92299 1.25960 1.02468 0.95187 0.96319 1.70098 1.37204 1.12023 1.38269 0.85572 0.79105 0.77687 0.79126 1.19237 1.20939 1.19257 1.21639 0.95066 0.97694 1.00215 1.22686 0.99110 0.88221 0.97717 0.87100 0.90068 0.86501 0.91302 0.90106 0.90472 0.75827 0.90052 0.94331 0.95244 0.90447 0.92732 0.93269 0.93740 0.99456 0.99655 0.92918 0.92907 0.92352 0.85201 0.95725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 9.80 71.24 0.70 -1.01 16 2 C 0.34 5.52 6.19 29.10 0.18 5.70 16 3 O -0.49 -11.55 16.64 -1.45 -0.02 -11.57 16 4 C 0.10 1.69 0.86 -11.54 -0.01 1.68 16 5 C -0.13 -2.34 8.37 71.98 0.60 -1.73 16 6 O -0.54 -7.41 8.83 -148.98 -1.32 -8.73 16 7 C 0.04 0.85 4.16 86.31 0.36 1.21 16 8 N -0.53 -14.50 3.90 -896.38 -3.49 -17.99 16 9 C 0.06 1.96 5.46 86.32 0.47 2.43 16 10 C -0.09 -3.57 5.15 30.64 0.16 -3.41 16 11 C -0.07 -3.17 2.20 -10.72 -0.02 -3.20 16 12 C 0.03 1.88 4.45 29.85 0.13 2.01 16 13 C -0.53 -30.72 8.45 25.60 0.22 -30.50 16 14 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 15 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 16 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 17 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C -0.11 -3.82 5.38 30.64 0.16 -3.65 16 22 C 0.05 1.34 3.98 86.32 0.34 1.68 16 23 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 24 H 0.08 0.74 8.12 -2.39 -0.02 0.73 16 25 H 0.12 0.56 7.94 -2.39 -0.02 0.54 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.72 6.34 -2.39 -0.02 1.70 16 29 H 0.39 2.92 9.04 -72.20 -0.65 2.27 16 30 H 0.08 1.97 7.55 -2.39 -0.02 1.96 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 34 H 0.05 2.26 7.05 -2.39 -0.02 2.24 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 39 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.13 3.10 4.10 -1.72 -0.01 3.10 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -70.17 334.79 1.56 -68.60 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.33 Total: 8.92 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 3.76 Total: -28.44 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -3.21 Total: -75.92 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.34 Total: -20.30 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.17 1.56 -68.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516056845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.184 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds