Wall clock time and date at job start Mon Mar 30 2020 01:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47247 * 2 1 4 4 C 1.37096 * 120.00456 * 264.77078 * 3 2 1 5 5 H 1.08002 * 120.00558 * 138.84690 * 4 3 2 6 6 C 1.38954 * 119.99395 * 318.85608 * 4 3 2 7 7 N 1.31411 * 120.00337 * 341.81660 * 6 4 3 8 8 Si 1.86808 * 119.99899 * 161.82465 * 6 4 3 9 9 H 1.48501 * 109.46901 * 89.99293 * 8 6 4 10 10 H 1.48493 * 109.46945 * 209.99248 * 8 6 4 11 11 H 1.48495 * 109.46946 * 329.99772 * 8 6 4 12 12 C 1.34781 * 120.00089 * 84.76545 * 3 2 1 13 13 O 1.21297 * 120.00034 * 179.97438 * 12 3 2 14 14 C 1.50697 * 119.99911 * 0.02562 * 12 3 2 15 15 O 1.42897 * 109.47230 * 179.97438 * 14 12 3 16 16 C 1.42900 * 114.00482 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.46774 * 330.00188 * 16 15 14 18 18 C 1.53009 * 109.46845 * 89.99804 * 16 15 14 19 19 C 1.53001 * 109.46865 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47159 * 300.00474 * 19 18 16 21 21 C 1.52992 * 109.47627 * 59.99866 * 20 19 18 22 22 H 1.09000 * 109.47019 * 59.99996 * 21 20 19 23 23 C 1.52999 * 109.47445 * 180.02562 * 21 20 19 24 24 C 1.52993 * 109.47652 * 209.99827 * 16 15 14 25 25 H 1.08998 * 109.47301 * 299.99762 * 1 2 3 26 26 H 1.08996 * 109.47028 * 60.00020 * 1 2 3 27 27 H 1.09001 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47539 * 239.99854 * 2 1 3 29 29 H 1.09006 * 109.46981 * 119.99842 * 2 1 3 30 30 H 0.97000 * 120.00229 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47371 * 59.99594 * 14 12 3 32 32 H 1.08999 * 109.46846 * 299.99441 * 14 12 3 33 33 H 1.09000 * 109.47122 * 60.00596 * 18 16 15 34 34 H 1.08997 * 109.47189 * 300.00137 * 18 16 15 35 35 H 1.09000 * 109.46963 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.47043 * 60.00206 * 19 18 16 37 37 H 1.09002 * 109.46973 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.46924 * 299.99804 * 20 19 18 39 39 H 1.09000 * 109.47297 * 59.99821 * 23 21 20 40 40 H 1.09000 * 109.47245 * 180.02562 * 23 21 20 41 41 H 1.09007 * 109.46648 * 299.99984 * 23 21 20 42 42 H 1.08999 * 109.47170 * 300.00553 * 24 16 15 43 43 H 1.09006 * 109.47237 * 60.00036 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0743 3.0219 -1.3535 6 6 3.0371 1.2841 -2.1605 7 7 3.6792 0.1818 -1.8451 8 14 3.0498 1.9004 -3.9239 9 1 4.2054 2.8119 -4.1214 10 1 3.1659 0.7461 -4.8508 11 1 1.7884 2.6332 -4.2013 12 6 2.1426 2.0520 1.1624 13 8 2.5474 3.1955 1.1624 14 6 1.7797 1.3812 2.4620 15 8 1.9963 2.2895 3.5437 16 6 1.6805 1.7494 4.8285 17 1 0.8826 1.0137 4.7271 18 6 2.9220 1.0773 5.4183 19 6 2.5837 0.4984 6.7936 20 6 2.1237 1.6244 7.7217 21 6 0.8823 2.2965 7.1319 22 1 0.0845 1.5608 7.0302 23 6 0.4227 3.4229 8.0597 24 6 1.2209 2.8757 5.7563 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.1599 -0.3118 -2.5279 31 1 2.4017 0.4969 2.6006 32 1 0.7304 1.0872 2.4386 33 1 3.7199 1.8129 5.5197 34 1 3.2494 0.2748 4.7573 35 1 3.4683 0.0200 7.2140 36 1 1.7860 -0.2373 6.6919 37 1 1.8831 1.2121 8.7016 38 1 2.9215 2.3602 7.8234 39 1 1.2206 4.1586 8.1611 40 1 -0.4620 3.9014 7.6397 41 1 0.1818 3.0108 9.0397 42 1 2.0188 3.6114 5.8576 43 1 0.3364 3.3546 5.3362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522150288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:14 Heat of formation + Delta-G solvation = -104.612871 kcal Electronic energy + Delta-G solvation = -21414.596874 eV Core-core repulsion = 18266.045361 eV Total energy + Delta-G solvation = -3148.551513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.35523 -38.36548 -36.31354 -34.79876 -32.35480 -32.05446 -30.09036 -29.42735 -27.31817 -26.46232 -24.37767 -22.38689 -22.24559 -21.20277 -19.93099 -19.00224 -16.84981 -16.40406 -15.57810 -15.40265 -15.29754 -14.79563 -14.57500 -14.25342 -13.98898 -13.68653 -13.14988 -12.90841 -12.88015 -12.58047 -12.46401 -12.05366 -11.88270 -11.73414 -11.62441 -11.28921 -11.07490 -11.01973 -10.96475 -10.86156 -10.53902 -10.49428 -10.33908 -10.31286 -10.19344 -10.10511 -9.10675 -8.88568 -8.27777 -7.39401 -6.29716 -3.97942 3.20139 3.27795 3.32454 3.74321 3.95348 4.24932 4.59528 4.69199 4.80149 5.01625 5.03989 5.07468 5.22376 5.23450 5.39364 5.47048 5.51271 5.56250 5.61827 5.64432 5.73016 5.75390 5.86102 5.90340 5.94157 5.97579 6.03214 6.11266 6.20105 6.21041 6.23070 6.31904 6.35866 6.42565 6.48999 6.85717 7.20327 7.57954 7.61261 8.33358 8.57153 9.23798 9.41187 10.05657 10.75813 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035915 B = 0.003873 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.426981 B = 7228.200339 C = 7329.877720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.443 5.443 4 C -0.307 4.307 5 H 0.088 0.912 6 C 0.038 3.962 7 N -0.873 5.873 8 Si 0.919 3.081 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.464 3.536 13 O -0.560 6.560 14 C 0.050 3.950 15 O -0.356 6.356 16 C 0.087 3.913 17 H 0.055 0.945 18 C -0.143 4.143 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.089 4.089 22 H 0.069 0.931 23 C -0.146 4.146 24 C -0.110 4.110 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.267 0.733 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 -3.260 15.467 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.022 4.022 3 N -0.165 5.165 4 C -0.434 4.434 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.511 5.511 8 Si 0.745 3.255 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.251 3.749 13 O -0.441 6.441 14 C -0.030 4.030 15 O -0.274 6.274 16 C 0.029 3.971 17 H 0.073 0.927 18 C -0.181 4.181 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.108 4.108 22 H 0.088 0.912 23 C -0.203 4.203 24 C -0.148 4.148 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.791 -2.635 15.333 16.600 hybrid contribution 0.010 -0.328 -0.851 0.912 sum -5.781 -2.963 14.482 15.872 Atomic orbital electron populations 1.22242 0.98211 1.00379 1.01621 1.21474 0.91631 0.85639 1.03475 1.43382 1.56858 1.11778 1.04434 1.19369 1.34873 0.98635 0.90565 0.89426 1.25432 0.93984 0.96572 1.00613 1.69926 1.29546 1.17610 1.34010 0.86061 0.79015 0.78310 0.82071 1.20249 1.20853 1.19371 1.20095 0.82353 0.88177 0.84234 1.90541 1.48649 1.18444 1.86478 1.22431 0.99828 0.92838 0.87884 1.88061 1.87619 1.38688 1.12983 1.22080 0.95626 0.95266 0.84127 0.92658 1.22062 0.99066 1.00687 0.96287 1.21489 1.01035 0.97719 0.95120 1.21631 0.97604 0.97884 0.98207 1.21106 0.97664 0.97486 0.94519 0.91242 1.21811 1.01285 0.98317 0.98913 1.21632 1.01983 0.97758 0.93398 0.93977 0.92219 0.93024 0.87680 0.93576 0.92294 0.91794 0.92053 0.91014 0.91745 0.91820 0.92069 0.92109 0.91779 0.92567 0.92597 0.92794 0.90986 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.15 37.16 0.38 -2.58 16 2 C 0.10 2.21 5.41 -4.04 -0.02 2.19 16 3 N -0.44 -11.51 2.50 -114.81 -0.29 -11.79 16 4 C -0.31 -8.68 8.84 -14.93 -0.13 -8.82 16 5 H 0.09 2.59 7.82 -52.49 -0.41 2.18 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.94 16 7 N -0.87 -23.83 11.61 55.50 0.64 -23.19 16 8 Si 0.92 20.84 29.59 -169.99 -5.03 15.81 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.46 12.09 7.67 -10.99 -0.08 12.01 16 13 O -0.56 -16.95 16.41 -14.37 -0.24 -17.19 16 14 C 0.05 1.01 4.83 36.00 0.17 1.19 16 15 O -0.36 -7.14 9.52 -55.14 -0.52 -7.66 16 16 C 0.09 1.28 2.61 -26.73 -0.07 1.21 16 17 H 0.06 0.74 7.79 -51.93 -0.40 0.33 16 18 C -0.14 -1.88 5.54 -26.73 -0.15 -2.03 16 19 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 20 C -0.12 -1.08 5.20 -26.74 -0.14 -1.22 16 21 C -0.09 -0.88 2.72 -90.60 -0.25 -1.13 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 24 C -0.11 -1.41 4.86 -26.71 -0.13 -1.54 16 25 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.11 2.50 5.76 -51.93 -0.30 2.20 16 29 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.06 1.19 7.14 -51.93 -0.37 0.82 16 32 H 0.06 1.09 6.48 -51.93 -0.34 0.75 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.88 7.87 -51.93 -0.41 0.47 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -32.36 339.12 -8.20 -40.55 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.55 Total: 0.37 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.32 Total: -2.01 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.36 Total: -34.98 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.76 Total: -24.85 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.36 -8.20 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522150288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.061 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds