Wall clock time and date at job start Mon Mar 30 2020 01:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47247 * 2 1 4 4 C 1.37096 * 120.00456 * 264.77078 * 3 2 1 5 5 H 1.08002 * 120.00558 * 138.84690 * 4 3 2 6 6 C 1.38954 * 119.99395 * 318.85608 * 4 3 2 7 7 N 1.31411 * 120.00337 * 341.81660 * 6 4 3 8 8 Si 1.86808 * 119.99899 * 161.82465 * 6 4 3 9 9 H 1.48501 * 109.46901 * 89.99293 * 8 6 4 10 10 H 1.48493 * 109.46945 * 209.99248 * 8 6 4 11 11 H 1.48495 * 109.46946 * 329.99772 * 8 6 4 12 12 C 1.34781 * 120.00089 * 84.76545 * 3 2 1 13 13 O 1.21297 * 120.00034 * 179.97438 * 12 3 2 14 14 C 1.50697 * 119.99911 * 0.02562 * 12 3 2 15 15 O 1.42897 * 109.47230 * 179.97438 * 14 12 3 16 16 C 1.42900 * 114.00482 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.46774 * 330.00188 * 16 15 14 18 18 C 1.53009 * 109.46845 * 89.99804 * 16 15 14 19 19 C 1.53001 * 109.46865 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47159 * 300.00474 * 19 18 16 21 21 C 1.52992 * 109.47627 * 59.99866 * 20 19 18 22 22 H 1.09000 * 109.47019 * 59.99996 * 21 20 19 23 23 C 1.52999 * 109.47445 * 180.02562 * 21 20 19 24 24 C 1.52993 * 109.47652 * 209.99827 * 16 15 14 25 25 H 1.08998 * 109.47301 * 299.99762 * 1 2 3 26 26 H 1.08996 * 109.47028 * 60.00020 * 1 2 3 27 27 H 1.09001 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47539 * 239.99854 * 2 1 3 29 29 H 1.09006 * 109.46981 * 119.99842 * 2 1 3 30 30 H 0.97000 * 120.00229 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47371 * 59.99594 * 14 12 3 32 32 H 1.08999 * 109.46846 * 299.99441 * 14 12 3 33 33 H 1.09000 * 109.47122 * 60.00596 * 18 16 15 34 34 H 1.08997 * 109.47189 * 300.00137 * 18 16 15 35 35 H 1.09000 * 109.46963 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.47043 * 60.00206 * 19 18 16 37 37 H 1.09002 * 109.46973 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.46924 * 299.99804 * 20 19 18 39 39 H 1.09000 * 109.47297 * 59.99821 * 23 21 20 40 40 H 1.09000 * 109.47245 * 180.02562 * 23 21 20 41 41 H 1.09007 * 109.46648 * 299.99984 * 23 21 20 42 42 H 1.08999 * 109.47170 * 300.00553 * 24 16 15 43 43 H 1.09006 * 109.47237 * 60.00036 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0743 3.0219 -1.3535 6 6 3.0371 1.2841 -2.1605 7 7 3.6792 0.1818 -1.8451 8 14 3.0498 1.9004 -3.9239 9 1 4.2054 2.8119 -4.1214 10 1 3.1659 0.7461 -4.8508 11 1 1.7884 2.6332 -4.2013 12 6 2.1426 2.0520 1.1624 13 8 2.5474 3.1955 1.1624 14 6 1.7797 1.3812 2.4620 15 8 1.9963 2.2895 3.5437 16 6 1.6805 1.7494 4.8285 17 1 0.8826 1.0137 4.7271 18 6 2.9220 1.0773 5.4183 19 6 2.5837 0.4984 6.7936 20 6 2.1237 1.6244 7.7217 21 6 0.8823 2.2965 7.1319 22 1 0.0845 1.5608 7.0302 23 6 0.4227 3.4229 8.0597 24 6 1.2209 2.8757 5.7563 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.1599 -0.3118 -2.5279 31 1 2.4017 0.4969 2.6006 32 1 0.7304 1.0872 2.4386 33 1 3.7199 1.8129 5.5197 34 1 3.2494 0.2748 4.7573 35 1 3.4683 0.0200 7.2140 36 1 1.7860 -0.2373 6.6919 37 1 1.8831 1.2121 8.7016 38 1 2.9215 2.3602 7.8234 39 1 1.2206 4.1586 8.1611 40 1 -0.4620 3.9014 7.6397 41 1 0.1818 3.0108 9.0397 42 1 2.0188 3.6114 5.8576 43 1 0.3364 3.3546 5.3362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522150288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:14 Heat of formation + Delta-G solvation = -123.125415 kcal Electronic energy + Delta-G solvation = -21415.399638 eV Core-core repulsion = 18266.045361 eV Total energy + Delta-G solvation = -3149.354277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77059 -39.93437 -37.64872 -36.78275 -34.08368 -33.21053 -31.26727 -31.12584 -28.98634 -27.28093 -26.31982 -23.94926 -23.32507 -22.17436 -21.16973 -20.55701 -18.78751 -18.06005 -17.17321 -17.15498 -16.68234 -16.21435 -15.81531 -15.56274 -15.26008 -15.07090 -14.59049 -14.45250 -14.08010 -13.91820 -13.57958 -13.34981 -13.34151 -13.27391 -12.87325 -12.74749 -12.66817 -12.47503 -12.25336 -12.08076 -11.95691 -11.86562 -11.80427 -11.40160 -11.29324 -11.25228 -10.92411 -10.39928 -10.30742 -9.43549 -8.36291 -6.13481 1.37578 1.40612 1.53578 1.97966 2.18897 2.49350 2.98689 3.30095 3.73023 3.78752 3.95936 4.01776 4.10282 4.15779 4.23473 4.26411 4.30747 4.40531 4.52125 4.53963 4.61167 4.65835 4.78234 4.82791 4.86247 5.00507 5.01205 5.08485 5.08806 5.14483 5.28554 5.29579 5.30518 5.39976 5.42157 5.43645 5.52692 5.57987 6.15480 6.28273 6.58013 7.16837 7.40112 8.03353 8.67881 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035915 B = 0.003873 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.426981 B = 7228.200339 C = 7329.877720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.099 3.901 3 N -0.450 5.450 4 C -0.345 4.345 5 H 0.060 0.940 6 C 0.006 3.994 7 N -0.890 5.890 8 Si 0.984 3.016 9 H -0.280 1.280 10 H -0.264 1.264 11 H -0.265 1.265 12 C 0.443 3.557 13 O -0.620 6.620 14 C 0.068 3.932 15 O -0.392 6.392 16 C 0.079 3.921 17 H 0.075 0.925 18 C -0.142 4.142 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.083 4.083 22 H 0.081 0.919 23 C -0.145 4.145 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.275 0.725 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -5.230 16.606 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 N -0.171 5.171 4 C -0.473 4.473 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.528 5.528 8 Si 0.807 3.193 9 H -0.206 1.206 10 H -0.188 1.188 11 H -0.190 1.190 12 C 0.232 3.768 13 O -0.506 6.506 14 C -0.012 4.012 15 O -0.311 6.311 16 C 0.022 3.978 17 H 0.093 0.907 18 C -0.180 4.180 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.102 4.102 22 H 0.100 0.900 23 C -0.202 4.202 24 C -0.147 4.147 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.025 -4.660 16.484 18.515 hybrid contribution 0.432 0.277 -1.189 1.295 sum -6.594 -4.383 15.295 17.222 Atomic orbital electron populations 1.22131 0.94945 1.02812 1.01428 1.21644 0.94283 0.83134 1.03358 1.43701 1.56261 1.13145 1.03986 1.19356 1.37065 0.98303 0.92616 0.92236 1.26186 0.92859 0.96546 1.04070 1.69984 1.29197 1.18110 1.35461 0.85102 0.78787 0.78251 0.77175 1.20590 1.18809 1.18981 1.21129 0.81619 0.87809 0.86226 1.90483 1.51434 1.21079 1.87630 1.22194 1.01628 0.92161 0.85200 1.88032 1.88254 1.39968 1.14820 1.22435 0.96930 0.96383 0.82059 0.90663 1.22052 0.97842 0.99932 0.98195 1.21478 1.02080 0.98100 0.93082 1.21642 0.97022 0.97473 0.99043 1.21096 0.98340 0.98064 0.92651 0.90021 1.21803 1.01048 0.97859 0.99483 1.21669 1.00951 0.97067 0.94996 0.92784 0.93824 0.89170 0.89872 0.91494 0.91576 0.90159 0.89045 0.92875 0.92408 0.90684 0.90661 0.89795 0.92519 0.93065 0.92669 0.90973 0.92730 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.20 10.15 71.98 0.73 -4.47 16 2 C 0.10 4.21 5.41 86.38 0.47 4.67 16 3 N -0.45 -23.89 2.50 -635.54 -1.59 -25.48 16 4 C -0.35 -20.24 8.84 84.04 0.74 -19.49 16 5 H 0.06 3.73 7.82 -2.91 -0.02 3.71 16 6 C 0.01 0.34 4.95 84.93 0.42 0.76 16 7 N -0.89 -48.64 11.61 21.66 0.25 -48.38 16 8 Si 0.98 42.96 29.59 68.60 2.03 44.99 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 C 0.44 23.73 7.67 87.66 0.67 24.40 16 13 O -0.62 -39.55 16.41 15.95 0.26 -39.29 16 14 C 0.07 2.69 4.83 71.23 0.34 3.04 16 15 O -0.39 -15.90 9.52 -129.94 -1.24 -17.14 16 16 C 0.08 2.25 2.61 30.59 0.08 2.33 16 17 H 0.08 1.82 7.79 -2.39 -0.02 1.81 16 18 C -0.14 -3.62 5.54 30.60 0.17 -3.45 16 19 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 20 C -0.11 -1.83 5.20 30.59 0.16 -1.67 16 21 C -0.08 -1.45 2.72 -10.78 -0.03 -1.48 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 24 C -0.11 -2.74 4.86 30.61 0.15 -2.59 16 25 H 0.05 1.67 6.60 -2.39 -0.02 1.66 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 3.93 5.76 -2.39 -0.01 3.92 16 29 H 0.07 2.52 6.66 -2.38 -0.02 2.51 16 30 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.08 2.90 7.14 -2.39 -0.02 2.88 16 32 H 0.09 3.04 6.48 -2.39 -0.02 3.03 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.52 7.87 -2.39 -0.02 1.50 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -73.62 339.12 5.42 -68.20 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.96 Total: 18.32 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 4.75 Total: -1.22 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -1.34 Total: -73.87 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.98 Total: -56.42 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -73.62 5.42 -68.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522150288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.926 kcal (2) G-P(sol) polarization free energy of solvation -73.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds