Wall clock time and date at job start Mon Mar 30 2020 01:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47227 * 2 1 4 4 C 1.37103 * 119.99702 * 95.10642 * 3 2 1 5 5 H 1.08002 * 119.99530 * 213.89437 * 4 3 2 6 6 C 1.38950 * 120.00105 * 33.89911 * 4 3 2 7 7 N 1.31417 * 119.99983 * 22.40207 * 6 4 3 8 8 Si 1.86798 * 120.00070 * 202.39888 * 6 4 3 9 9 H 1.48493 * 109.47207 * 270.00454 * 8 6 4 10 10 H 1.48500 * 109.46516 * 30.00102 * 8 6 4 11 11 H 1.48498 * 109.47105 * 149.99657 * 8 6 4 12 12 C 1.34768 * 119.99937 * 275.10887 * 3 2 1 13 13 O 1.21296 * 119.99905 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00332 * 0.02562 * 12 3 2 15 15 O 1.42899 * 109.47412 * 179.97438 * 14 12 3 16 16 C 1.42892 * 113.99997 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47228 * 29.99820 * 16 15 14 18 18 C 1.53004 * 109.47423 * 269.99977 * 16 15 14 19 19 C 1.53001 * 109.47305 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.47141 * 59.99907 * 19 18 16 21 21 C 1.53002 * 109.47464 * 300.00174 * 20 19 18 22 22 H 1.08999 * 109.46644 * 299.99997 * 21 20 19 23 23 C 1.52997 * 109.47464 * 180.02562 * 21 20 19 24 24 C 1.53001 * 109.47084 * 59.99790 * 21 20 19 25 25 H 1.09005 * 109.46897 * 299.99989 * 1 2 3 26 26 H 1.08995 * 109.47292 * 59.99688 * 1 2 3 27 27 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47203 * 240.00285 * 2 1 3 29 29 H 1.09005 * 109.47270 * 119.99767 * 2 1 3 30 30 H 0.96999 * 120.00125 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.46537 * 299.99579 * 14 12 3 32 32 H 1.08995 * 109.47202 * 59.99285 * 14 12 3 33 33 H 1.08999 * 109.46790 * 300.00110 * 18 16 15 34 34 H 1.08999 * 109.47005 * 59.99814 * 18 16 15 35 35 H 1.09002 * 109.46823 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.47212 * 299.99760 * 19 18 16 37 37 H 1.08999 * 109.47188 * 59.99838 * 20 19 18 38 38 H 1.08997 * 109.47621 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.46969 * 60.00064 * 23 21 20 40 40 H 1.09002 * 109.47384 * 179.97438 * 23 21 20 41 41 H 1.09004 * 109.46856 * 299.99997 * 23 21 20 42 42 H 1.09003 * 109.47134 * 180.02562 * 24 21 20 43 43 H 1.08999 * 109.47212 * 60.00554 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3465 1.9923 1.1827 5 1 2.1775 3.0516 1.3082 6 6 2.8966 1.2487 2.2196 7 7 3.5042 0.1121 1.9628 8 14 2.7725 1.8648 3.9787 9 1 3.9521 2.7109 4.2912 10 1 1.5326 2.6666 4.1359 11 1 2.7340 0.7065 4.9073 12 6 2.1450 2.0512 -1.1625 13 8 2.5489 3.1949 -1.1625 14 6 1.7837 1.3798 -2.4624 15 8 2.0016 2.2877 -3.5442 16 6 1.6885 1.7466 -4.8291 17 1 0.8909 1.0104 -4.7288 18 6 2.9314 1.0749 -5.4165 19 6 2.5963 0.4961 -6.7926 20 6 2.1379 1.6221 -7.7215 21 6 0.8950 2.2937 -7.1343 22 1 0.0973 1.5577 -7.0344 23 6 0.4362 3.4193 -8.0636 24 6 1.2301 2.8725 -5.7582 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8879 -0.4071 2.6867 31 1 2.4055 0.4949 -2.5993 32 1 0.7342 1.0865 -2.4405 33 1 3.7290 1.8111 -5.5168 34 1 3.2583 0.2731 -4.7544 35 1 3.4817 0.0173 -7.2107 36 1 1.7986 -0.2399 -6.6927 37 1 2.9356 2.3581 -7.8214 38 1 1.8996 1.2099 -8.7020 39 1 0.1973 3.0065 -9.0437 40 1 -0.4496 3.8975 -7.6454 41 1 1.2339 4.1554 -8.1639 42 1 0.3445 3.3507 -5.3396 43 1 2.0278 3.6086 -5.8581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522150289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:16 Heat of formation + Delta-G solvation = -102.905452 kcal Electronic energy + Delta-G solvation = -21414.029215 eV Core-core repulsion = 18265.551741 eV Total energy + Delta-G solvation = -3148.477473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.35962 -38.38011 -36.32406 -34.82897 -32.35724 -32.04309 -30.09344 -29.45507 -27.32114 -26.46570 -24.40080 -22.38986 -22.24158 -21.20559 -19.93207 -18.99259 -16.86306 -16.44148 -15.58827 -15.39409 -15.29610 -14.79707 -14.56592 -14.25257 -13.99588 -13.69399 -13.15179 -12.90515 -12.88105 -12.57734 -12.46588 -12.05177 -11.88694 -11.76852 -11.62385 -11.29709 -11.08825 -11.02502 -10.96451 -10.86612 -10.54242 -10.46809 -10.33538 -10.32026 -10.18926 -10.08290 -9.11916 -8.91119 -8.28566 -7.47322 -6.31926 -3.92324 3.18572 3.27110 3.32544 3.73982 3.92917 4.23857 4.59274 4.68916 4.79927 5.00401 5.03717 5.07265 5.22072 5.23250 5.39187 5.46725 5.51000 5.56077 5.61967 5.64038 5.72649 5.75081 5.85792 5.90149 5.93979 5.98006 6.02975 6.11084 6.20589 6.21755 6.22823 6.32486 6.35785 6.42370 6.49542 6.87310 7.25378 7.57532 7.61472 8.27161 8.55007 9.21969 9.42350 10.04123 10.72152 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.003859 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.992683 B = 7254.227656 C = 7377.459458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.441 5.441 4 C -0.305 4.305 5 H 0.093 0.907 6 C 0.034 3.966 7 N -0.871 5.871 8 Si 0.918 3.082 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.283 1.283 12 C 0.459 3.541 13 O -0.563 6.563 14 C 0.052 3.948 15 O -0.355 6.355 16 C 0.087 3.913 17 H 0.055 0.945 18 C -0.143 4.143 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.089 4.089 22 H 0.069 0.931 23 C -0.146 4.146 24 C -0.110 4.110 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.115 0.885 30 H 0.267 0.733 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -3.206 -15.571 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 N -0.162 5.162 4 C -0.432 4.432 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.509 5.509 8 Si 0.745 3.255 9 H -0.203 1.203 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.246 3.754 13 O -0.445 6.445 14 C -0.028 4.028 15 O -0.273 6.273 16 C 0.029 3.971 17 H 0.073 0.927 18 C -0.181 4.181 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.108 4.108 22 H 0.087 0.913 23 C -0.203 4.203 24 C -0.148 4.148 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.569 -2.585 -15.426 16.603 hybrid contribution -0.082 -0.333 0.840 0.907 sum -5.651 -2.918 -14.586 15.913 Atomic orbital electron populations 1.22224 0.98198 1.00355 1.01569 1.21621 0.91763 0.85513 1.04157 1.43468 1.56374 1.11904 1.04494 1.19457 1.39797 0.95569 0.88407 0.88973 1.25328 0.94486 0.96544 1.00550 1.69927 1.32669 1.15439 1.32873 0.86070 0.79098 0.78333 0.82042 1.20274 1.19385 1.20816 1.20004 0.82938 0.88236 0.84211 1.90539 1.49061 1.18419 1.86464 1.22402 0.99804 0.92779 0.87848 1.88059 1.87668 1.38652 1.12952 1.22080 0.95637 0.95262 0.84122 0.92655 1.22061 0.99066 1.00687 0.96287 1.21487 1.01049 0.97718 0.95109 1.21631 0.97597 0.97881 0.98209 1.21098 0.97663 0.97499 0.94517 0.91251 1.21810 1.01288 0.98322 0.98905 1.21624 1.01997 0.97763 0.93380 0.92257 0.94041 0.93019 0.93628 0.86695 0.92250 0.91846 0.92081 0.91020 0.91748 0.91820 0.92074 0.91779 0.92106 0.92789 0.92596 0.92569 0.91319 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 10.15 37.16 0.38 -2.60 16 2 C 0.09 2.04 5.44 -4.04 -0.02 2.02 16 3 N -0.44 -11.47 2.56 -114.80 -0.29 -11.77 16 4 C -0.30 -8.62 8.98 -14.93 -0.13 -8.76 16 5 H 0.09 2.74 7.70 -52.49 -0.40 2.33 16 6 C 0.03 0.92 4.92 -17.47 -0.09 0.83 16 7 N -0.87 -23.52 11.34 55.50 0.63 -22.89 16 8 Si 0.92 20.71 29.61 -169.99 -5.03 15.68 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.46 11.94 7.67 -10.99 -0.08 11.85 16 13 O -0.56 -17.01 16.32 -14.36 -0.23 -17.24 16 14 C 0.05 1.04 4.83 36.01 0.17 1.22 16 15 O -0.36 -7.13 9.52 -55.14 -0.52 -7.65 16 16 C 0.09 1.28 2.61 -26.73 -0.07 1.21 16 17 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 18 C -0.14 -1.88 5.54 -26.73 -0.15 -2.02 16 19 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 20 C -0.12 -1.08 5.20 -26.73 -0.14 -1.21 16 21 C -0.09 -0.88 2.72 -90.62 -0.25 -1.12 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 24 C -0.11 -1.41 4.85 -26.73 -0.13 -1.54 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.04 0.70 6.61 -51.93 -0.34 0.36 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.90 6.65 -51.93 -0.35 0.55 16 29 H 0.12 2.76 5.35 -51.93 -0.28 2.48 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.06 1.18 7.14 -51.92 -0.37 0.81 16 32 H 0.06 1.09 6.49 -51.93 -0.34 0.75 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -32.13 338.45 -8.20 -40.34 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.52 Total: 0.79 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.32 Total: -2.35 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.34 Total: -34.65 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.76 Total: -24.89 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.13 -8.20 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522150289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.570 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds