Wall clock time and date at job start Mon Mar 30 2020 01:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47227 * 2 1 4 4 C 1.37103 * 119.99702 * 95.10642 * 3 2 1 5 5 H 1.08002 * 119.99530 * 213.89437 * 4 3 2 6 6 C 1.38950 * 120.00105 * 33.89911 * 4 3 2 7 7 N 1.31417 * 119.99983 * 22.40207 * 6 4 3 8 8 Si 1.86798 * 120.00070 * 202.39888 * 6 4 3 9 9 H 1.48493 * 109.47207 * 270.00454 * 8 6 4 10 10 H 1.48500 * 109.46516 * 30.00102 * 8 6 4 11 11 H 1.48498 * 109.47105 * 149.99657 * 8 6 4 12 12 C 1.34768 * 119.99937 * 275.10887 * 3 2 1 13 13 O 1.21296 * 119.99905 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00332 * 0.02562 * 12 3 2 15 15 O 1.42899 * 109.47412 * 179.97438 * 14 12 3 16 16 C 1.42892 * 113.99997 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47228 * 29.99820 * 16 15 14 18 18 C 1.53004 * 109.47423 * 269.99977 * 16 15 14 19 19 C 1.53001 * 109.47305 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.47141 * 59.99907 * 19 18 16 21 21 C 1.53002 * 109.47464 * 300.00174 * 20 19 18 22 22 H 1.08999 * 109.46644 * 299.99997 * 21 20 19 23 23 C 1.52997 * 109.47464 * 180.02562 * 21 20 19 24 24 C 1.53001 * 109.47084 * 59.99790 * 21 20 19 25 25 H 1.09005 * 109.46897 * 299.99989 * 1 2 3 26 26 H 1.08995 * 109.47292 * 59.99688 * 1 2 3 27 27 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47203 * 240.00285 * 2 1 3 29 29 H 1.09005 * 109.47270 * 119.99767 * 2 1 3 30 30 H 0.96999 * 120.00125 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.46537 * 299.99579 * 14 12 3 32 32 H 1.08995 * 109.47202 * 59.99285 * 14 12 3 33 33 H 1.08999 * 109.46790 * 300.00110 * 18 16 15 34 34 H 1.08999 * 109.47005 * 59.99814 * 18 16 15 35 35 H 1.09002 * 109.46823 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.47212 * 299.99760 * 19 18 16 37 37 H 1.08999 * 109.47188 * 59.99838 * 20 19 18 38 38 H 1.08997 * 109.47621 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.46969 * 60.00064 * 23 21 20 40 40 H 1.09002 * 109.47384 * 179.97438 * 23 21 20 41 41 H 1.09004 * 109.46856 * 299.99997 * 23 21 20 42 42 H 1.09003 * 109.47134 * 180.02562 * 24 21 20 43 43 H 1.08999 * 109.47212 * 60.00554 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3465 1.9923 1.1827 5 1 2.1775 3.0516 1.3082 6 6 2.8966 1.2487 2.2196 7 7 3.5042 0.1121 1.9628 8 14 2.7725 1.8648 3.9787 9 1 3.9521 2.7109 4.2912 10 1 1.5326 2.6666 4.1359 11 1 2.7340 0.7065 4.9073 12 6 2.1450 2.0512 -1.1625 13 8 2.5489 3.1949 -1.1625 14 6 1.7837 1.3798 -2.4624 15 8 2.0016 2.2877 -3.5442 16 6 1.6885 1.7466 -4.8291 17 1 0.8909 1.0104 -4.7288 18 6 2.9314 1.0749 -5.4165 19 6 2.5963 0.4961 -6.7926 20 6 2.1379 1.6221 -7.7215 21 6 0.8950 2.2937 -7.1343 22 1 0.0973 1.5577 -7.0344 23 6 0.4362 3.4193 -8.0636 24 6 1.2301 2.8725 -5.7582 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8879 -0.4071 2.6867 31 1 2.4055 0.4949 -2.5993 32 1 0.7342 1.0865 -2.4405 33 1 3.7290 1.8111 -5.5168 34 1 3.2583 0.2731 -4.7544 35 1 3.4817 0.0173 -7.2107 36 1 1.7986 -0.2399 -6.6927 37 1 2.9356 2.3581 -7.8214 38 1 1.8996 1.2099 -8.7020 39 1 0.1973 3.0065 -9.0437 40 1 -0.4496 3.8975 -7.6454 41 1 1.2339 4.1554 -8.1639 42 1 0.3445 3.3507 -5.3396 43 1 2.0278 3.6086 -5.8581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522150289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:16 Heat of formation + Delta-G solvation = -121.216600 kcal Electronic energy + Delta-G solvation = -21414.823246 eV Core-core repulsion = 18265.551741 eV Total energy + Delta-G solvation = -3149.271504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77634 -39.94244 -37.65972 -36.80700 -34.06897 -33.21240 -31.29032 -31.13236 -28.98657 -27.28316 -26.33406 -23.95249 -23.32684 -22.17549 -21.15973 -20.55128 -18.80692 -18.09611 -17.17036 -17.12275 -16.68922 -16.21056 -15.82103 -15.56530 -15.26029 -15.07172 -14.59587 -14.44700 -14.07811 -13.91620 -13.61161 -13.35012 -13.34427 -13.27503 -12.88246 -12.75037 -12.66848 -12.45700 -12.22283 -12.08873 -11.95892 -11.86668 -11.80714 -11.40265 -11.29610 -11.25538 -10.93635 -10.40034 -10.31058 -9.50764 -8.37298 -6.06938 1.36344 1.41157 1.54172 1.96230 2.18607 2.49558 2.98204 3.29841 3.72816 3.78500 3.95159 4.01640 4.10137 4.15709 4.23312 4.26239 4.30606 4.40652 4.52114 4.53848 4.61895 4.65756 4.78158 4.83166 4.86177 5.00056 5.00945 5.08386 5.08629 5.14436 5.29456 5.30036 5.30479 5.39892 5.42075 5.43900 5.55527 5.57860 6.11465 6.28193 6.55459 7.15745 7.41468 8.02693 8.65295 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.003859 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.992683 B = 7254.227656 C = 7377.459458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.090 3.910 3 N -0.448 5.448 4 C -0.346 4.346 5 H 0.062 0.938 6 C 0.006 3.994 7 N -0.886 5.886 8 Si 0.983 3.017 9 H -0.279 1.279 10 H -0.268 1.268 11 H -0.263 1.263 12 C 0.437 3.563 13 O -0.623 6.623 14 C 0.069 3.931 15 O -0.391 6.391 16 C 0.079 3.921 17 H 0.075 0.925 18 C -0.142 4.142 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.083 4.083 22 H 0.081 0.919 23 C -0.145 4.145 24 C -0.109 4.109 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.276 0.724 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 -5.244 -16.662 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.033 4.033 3 N -0.168 5.168 4 C -0.474 4.474 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.523 5.523 8 Si 0.806 3.194 9 H -0.205 1.205 10 H -0.192 1.192 11 H -0.187 1.187 12 C 0.227 3.773 13 O -0.510 6.510 14 C -0.010 4.010 15 O -0.310 6.310 16 C 0.022 3.978 17 H 0.093 0.907 18 C -0.180 4.180 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.102 4.102 22 H 0.099 0.901 23 C -0.202 4.202 24 C -0.147 4.147 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.824 -4.679 -16.529 18.484 hybrid contribution 0.355 0.286 1.174 1.260 sum -6.469 -4.393 -15.355 17.231 Atomic orbital electron populations 1.22117 0.95035 1.02754 1.01345 1.21793 0.94352 0.83093 1.04084 1.43775 1.55748 1.13249 1.04055 1.19407 1.42455 0.94984 0.90575 0.92018 1.26079 0.93225 0.96540 1.03845 1.69981 1.32013 1.15936 1.34379 0.85117 0.78784 0.78340 0.77170 1.20486 1.19218 1.18690 1.21042 0.82250 0.87885 0.86173 1.90481 1.51840 1.21046 1.87605 1.22168 1.01563 0.92132 0.85180 1.88031 1.88293 1.39941 1.14785 1.22435 0.96953 0.96368 0.82060 0.90695 1.22051 0.97826 0.99945 0.98192 1.21476 1.02099 0.98092 0.93075 1.21641 0.97007 0.97475 0.99046 1.21088 0.98348 0.98074 0.92650 0.90050 1.21802 1.01050 0.97868 0.99472 1.21661 1.00956 0.97078 0.94981 0.93922 0.92856 0.89197 0.91491 0.88816 0.91434 0.90154 0.89165 0.92855 0.92384 0.90665 0.90684 0.92505 0.89796 0.90967 0.92680 0.93056 0.92087 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 10.15 71.98 0.73 -4.51 16 2 C 0.09 3.84 5.44 86.38 0.47 4.31 16 3 N -0.45 -23.81 2.56 -635.52 -1.62 -25.43 16 4 C -0.35 -20.30 8.98 84.04 0.75 -19.55 16 5 H 0.06 3.90 7.70 -2.91 -0.02 3.88 16 6 C 0.01 0.31 4.92 84.93 0.42 0.73 16 7 N -0.89 -47.72 11.34 21.66 0.25 -47.47 16 8 Si 0.98 42.62 29.61 68.60 2.03 44.65 16 9 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 12 C 0.44 23.43 7.67 87.66 0.67 24.10 16 13 O -0.62 -39.72 16.32 15.95 0.26 -39.46 16 14 C 0.07 2.75 4.83 71.24 0.34 3.10 16 15 O -0.39 -15.90 9.52 -129.95 -1.24 -17.14 16 16 C 0.08 2.25 2.61 30.60 0.08 2.33 16 17 H 0.08 1.82 7.79 -2.39 -0.02 1.80 16 18 C -0.14 -3.60 5.54 30.60 0.17 -3.43 16 19 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 20 C -0.11 -1.83 5.20 30.59 0.16 -1.67 16 21 C -0.08 -1.45 2.72 -10.79 -0.03 -1.48 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 24 C -0.11 -2.74 4.85 30.60 0.15 -2.59 16 25 H 0.04 1.57 8.14 -2.38 -0.02 1.56 16 26 H 0.05 1.67 6.61 -2.39 -0.02 1.66 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 2.53 6.65 -2.39 -0.02 2.51 16 29 H 0.09 4.45 5.35 -2.38 -0.01 4.44 16 30 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.08 2.90 7.14 -2.38 -0.02 2.88 16 32 H 0.09 3.02 6.49 -2.39 -0.02 3.01 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.52 7.87 -2.39 -0.02 1.50 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -73.15 338.45 5.40 -67.76 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.96 Total: 19.03 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.76 Total: -1.94 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.38 Total: -72.90 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -0.98 Total: -56.60 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -73.15 5.40 -67.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522150289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.458 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds