Wall clock time and date at job start Mon Mar 30 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46494 * 109.46906 * 2 1 4 4 C 1.37102 * 120.00168 * 95.11461 * 3 2 1 5 5 H 1.07996 * 119.99928 * 213.89443 * 4 3 2 6 6 C 1.38949 * 119.99691 * 33.88831 * 4 3 2 7 7 N 1.31414 * 120.00153 * 22.40853 * 6 4 3 8 8 Si 1.86804 * 119.99657 * 202.40691 * 6 4 3 9 9 H 1.48497 * 109.46956 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47196 * 300.00296 * 8 6 4 11 11 H 1.48498 * 109.47182 * 60.00173 * 8 6 4 12 12 C 1.34786 * 120.00132 * 275.10480 * 3 2 1 13 13 O 1.21290 * 119.99866 * 180.02562 * 12 3 2 14 14 C 1.50700 * 119.99753 * 0.02562 * 12 3 2 15 15 O 1.42900 * 109.46870 * 179.97438 * 14 12 3 16 16 C 1.42900 * 113.99847 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.46891 * 329.99738 * 16 15 14 18 18 C 1.52999 * 109.47023 * 89.99819 * 16 15 14 19 19 C 1.53003 * 109.47085 * 59.99869 * 18 16 15 20 20 C 1.53000 * 109.47044 * 60.00167 * 19 18 16 21 21 C 1.52999 * 109.47043 * 299.99858 * 20 19 18 22 22 H 1.09005 * 109.47101 * 299.99987 * 21 20 19 23 23 C 1.53000 * 109.47043 * 179.97438 * 21 20 19 24 24 C 1.53000 * 109.47240 * 209.99734 * 16 15 14 25 25 H 1.08999 * 109.47102 * 300.00252 * 1 2 3 26 26 H 1.09000 * 109.46645 * 60.00207 * 1 2 3 27 27 H 1.08998 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46868 * 240.00009 * 2 1 3 29 29 H 1.08991 * 109.46710 * 120.00081 * 2 1 3 30 30 H 0.96995 * 119.99613 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47048 * 299.99382 * 14 12 3 32 32 H 1.08996 * 109.47244 * 59.99322 * 14 12 3 33 33 H 1.09005 * 109.47101 * 180.02562 * 18 16 15 34 34 H 1.09005 * 109.47026 * 299.99947 * 18 16 15 35 35 H 1.09004 * 109.47106 * 179.97438 * 19 18 16 36 36 H 1.08992 * 109.47045 * 299.99877 * 19 18 16 37 37 H 1.09005 * 109.47162 * 59.99808 * 20 19 18 38 38 H 1.08998 * 109.46863 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.46863 * 60.00172 * 23 21 20 40 40 H 1.09004 * 109.46816 * 179.97438 * 23 21 20 41 41 H 1.08992 * 109.47437 * 300.00091 * 23 21 20 42 42 H 1.08995 * 109.46700 * 59.99811 * 24 16 15 43 43 H 1.08992 * 109.47437 * 180.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3466 1.9922 1.1826 5 1 2.1776 3.0515 1.3082 6 6 2.8967 1.2487 2.2195 7 7 3.5042 0.1120 1.9626 8 14 2.7726 1.8647 3.9786 9 1 3.4339 0.8966 4.8899 10 1 3.4429 3.1852 4.0891 11 1 1.3428 2.0025 4.3552 12 6 2.1450 2.0512 -1.1626 13 8 2.5498 3.1946 -1.1626 14 6 1.7839 1.3797 -2.4625 15 8 2.0018 2.2876 -3.5443 16 6 1.6888 1.7464 -4.8293 17 1 1.8564 0.6694 -4.8206 18 6 0.2223 2.0317 -5.1592 19 6 -0.0130 3.5434 -5.1714 20 6 0.8829 4.1906 -6.2294 21 6 2.3494 3.9053 -5.8994 22 1 2.5883 4.3181 -4.9192 23 6 3.2454 4.5519 -6.9577 24 6 2.5847 2.3935 -5.8873 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8879 -0.4072 2.6865 31 1 2.4056 0.4949 -2.5994 32 1 0.7344 1.0863 -2.4406 33 1 -0.0167 1.6185 -6.1392 34 1 -0.4161 1.5706 -4.4055 35 1 -1.0577 3.7467 -5.4069 36 1 0.2257 3.9561 -4.1913 37 1 0.6441 3.7777 -7.2096 38 1 0.7156 5.2676 -6.2377 39 1 3.0779 5.6289 -6.9668 40 1 4.2902 4.3490 -6.7224 41 1 3.0065 4.1388 -7.9376 42 1 3.6294 2.1903 -5.6521 43 1 2.3457 1.9811 -6.8674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522150290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:18 Heat of formation + Delta-G solvation = -101.007873 kcal Electronic energy + Delta-G solvation = -21777.504056 eV Core-core repulsion = 18629.108868 eV Total energy + Delta-G solvation = -3148.395188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.40037 -38.31676 -35.96618 -34.80278 -32.17139 -32.01868 -30.13643 -29.45366 -27.38221 -26.33289 -24.38589 -22.39745 -22.23457 -21.15493 -19.50811 -18.98529 -16.80798 -16.17937 -15.91022 -15.34070 -15.04768 -14.98871 -14.41899 -14.06770 -13.96046 -13.50793 -13.14108 -12.89123 -12.66115 -12.41130 -12.23589 -12.04931 -11.80567 -11.76508 -11.58767 -11.41723 -11.20169 -11.02933 -10.92707 -10.75322 -10.44513 -10.35628 -10.30720 -10.12477 -10.05501 -9.84416 -9.09380 -8.90747 -8.28032 -7.47288 -6.31584 -3.92215 3.21060 3.26775 3.30193 3.81668 3.93918 4.26654 4.77004 4.81572 4.87819 5.01070 5.14464 5.22914 5.28322 5.36547 5.52654 5.57989 5.61595 5.69570 5.70967 5.75110 5.86765 5.87566 5.90629 5.93899 5.98912 6.02003 6.10667 6.21796 6.31156 6.35635 6.37700 6.41321 6.48335 6.49462 6.70478 6.87388 7.25570 7.58880 7.61675 8.27358 8.55333 9.22306 9.42762 10.04583 10.72475 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030379 B = 0.004449 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.471293 B = 6292.392521 C = 6618.508452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.441 5.441 4 C -0.305 4.305 5 H 0.092 0.908 6 C 0.035 3.965 7 N -0.871 5.871 8 Si 0.919 3.081 9 H -0.285 1.285 10 H -0.272 1.272 11 H -0.274 1.274 12 C 0.460 3.540 13 O -0.563 6.563 14 C 0.050 3.950 15 O -0.348 6.348 16 C 0.084 3.916 17 H 0.056 0.944 18 C -0.139 4.139 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.093 4.093 22 H 0.085 0.915 23 C -0.146 4.146 24 C -0.106 4.106 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.115 0.885 30 H 0.268 0.732 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 -0.940 -13.907 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.163 5.163 4 C -0.432 4.432 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.509 5.509 8 Si 0.745 3.255 9 H -0.210 1.210 10 H -0.197 1.197 11 H -0.199 1.199 12 C 0.247 3.753 13 O -0.444 6.444 14 C -0.030 4.030 15 O -0.266 6.266 16 C 0.025 3.975 17 H 0.074 0.926 18 C -0.177 4.177 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.111 4.111 22 H 0.104 0.896 23 C -0.203 4.203 24 C -0.144 4.144 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.505 -0.321 -13.768 14.831 hybrid contribution -0.194 -0.361 0.806 0.904 sum -5.699 -0.682 -12.962 14.176 Atomic orbital electron populations 1.22222 0.98223 1.00332 1.01540 1.21614 0.91740 0.85548 1.04132 1.43463 1.56418 1.11888 1.04519 1.19418 1.39828 0.95542 0.88453 0.89018 1.25323 0.94469 0.96560 1.00523 1.69918 1.32627 1.15439 1.32951 0.86118 0.78615 0.78769 0.81957 1.20997 1.19724 1.19920 1.19993 0.82882 0.88212 0.84186 1.90536 1.49006 1.18430 1.86461 1.22404 0.99869 0.92680 0.88053 1.88074 1.87239 1.38560 1.12757 1.22091 0.93931 0.96678 0.84765 0.92605 1.22006 0.96967 0.97438 1.01247 1.21426 0.98415 0.95006 1.00535 1.21550 0.94846 1.00050 0.98218 1.21078 0.94584 0.95143 1.00287 0.89614 1.21829 0.99681 1.00329 0.98447 1.21640 0.99737 0.95913 0.97078 0.92284 0.94058 0.93050 0.93645 0.86723 0.92202 0.91921 0.92183 0.91638 0.92024 0.92696 0.90655 0.92699 0.92330 0.92922 0.92768 0.93233 0.91390 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.15 37.16 0.38 -2.58 16 2 C 0.09 2.04 5.44 -4.04 -0.02 2.02 16 3 N -0.44 -11.39 2.56 -114.81 -0.29 -11.68 16 4 C -0.30 -8.57 8.98 -14.93 -0.13 -8.71 16 5 H 0.09 2.71 7.70 -52.49 -0.40 2.31 16 6 C 0.03 0.93 4.92 -17.47 -0.09 0.84 16 7 N -0.87 -23.47 11.34 55.50 0.63 -22.84 16 8 Si 0.92 20.69 29.61 -169.99 -5.03 15.65 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 C 0.46 11.78 7.67 -10.98 -0.08 11.70 16 13 O -0.56 -16.71 16.32 -14.36 -0.23 -16.95 16 14 C 0.05 0.99 4.83 36.01 0.17 1.16 16 15 O -0.35 -6.70 8.17 -55.14 -0.45 -7.15 16 16 C 0.08 1.19 2.92 -26.73 -0.08 1.12 16 17 H 0.06 0.72 7.79 -51.93 -0.40 0.32 16 18 C -0.14 -1.74 5.63 -26.73 -0.15 -1.89 16 19 C -0.12 -1.51 5.78 -26.73 -0.15 -1.66 16 20 C -0.11 -1.28 5.20 -26.73 -0.14 -1.42 16 21 C -0.09 -1.20 2.58 -90.62 -0.23 -1.44 16 22 H 0.09 1.41 7.68 -51.93 -0.40 1.01 16 23 C -0.15 -1.58 9.19 37.16 0.34 -1.24 16 24 C -0.11 -1.35 4.94 -26.73 -0.13 -1.48 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.69 6.61 -51.93 -0.34 0.35 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.89 6.65 -51.93 -0.35 0.55 16 29 H 0.12 2.74 5.35 -51.93 -0.28 2.47 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.06 1.15 7.35 -51.93 -0.38 0.77 16 32 H 0.06 1.05 6.28 -51.93 -0.33 0.73 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.78 7.87 -51.93 -0.41 0.37 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.20 7.68 -51.93 -0.40 0.81 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -31.53 336.38 -8.11 -39.64 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.47 Total: 1.85 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.32 Total: -3.58 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.34 Total: -34.52 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.68 Total: -24.10 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.53 -8.11 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522150290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.372 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds