Wall clock time and date at job start Mon Mar 30 2020 01:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47227 * 2 1 4 4 C 1.37103 * 119.99702 * 95.10642 * 3 2 1 5 5 H 1.08002 * 119.99530 * 213.89437 * 4 3 2 6 6 C 1.38950 * 120.00105 * 33.89911 * 4 3 2 7 7 N 1.31417 * 119.99983 * 22.40207 * 6 4 3 8 8 Si 1.86798 * 120.00070 * 202.39888 * 6 4 3 9 9 H 1.48493 * 109.47207 * 270.00454 * 8 6 4 10 10 H 1.48500 * 109.46516 * 30.00102 * 8 6 4 11 11 H 1.48498 * 109.47105 * 149.99657 * 8 6 4 12 12 C 1.34768 * 119.99937 * 275.10887 * 3 2 1 13 13 O 1.21296 * 119.99905 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00332 * 0.02562 * 12 3 2 15 15 O 1.42899 * 109.47412 * 179.97438 * 14 12 3 16 16 C 1.42892 * 113.99997 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47228 * 29.99820 * 16 15 14 18 18 C 1.53004 * 109.47423 * 269.99977 * 16 15 14 19 19 C 1.53004 * 109.47008 * 300.00221 * 18 16 15 20 20 C 1.53006 * 109.47040 * 299.99631 * 19 18 16 21 21 C 1.53001 * 109.46861 * 59.99936 * 20 19 18 22 22 H 1.09006 * 109.47417 * 59.99854 * 21 20 19 23 23 C 1.52997 * 109.47039 * 179.97438 * 21 20 19 24 24 C 1.52996 * 109.47553 * 300.00012 * 21 20 19 25 25 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46897 * 299.99989 * 1 2 3 27 27 H 1.08995 * 109.47292 * 59.99688 * 1 2 3 28 28 H 1.08998 * 109.47203 * 240.00285 * 2 1 3 29 29 H 1.09005 * 109.47270 * 119.99767 * 2 1 3 30 30 H 0.96999 * 120.00125 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.46537 * 299.99579 * 14 12 3 32 32 H 1.08995 * 109.47202 * 59.99285 * 14 12 3 33 33 H 1.08999 * 109.47005 * 59.99814 * 18 16 15 34 34 H 1.08991 * 109.47195 * 180.02562 * 18 16 15 35 35 H 1.08994 * 109.47309 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.47192 * 59.99292 * 19 18 16 37 37 H 1.08999 * 109.47096 * 300.00363 * 20 19 18 38 38 H 1.08999 * 109.47239 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.47465 * 180.02562 * 23 21 20 40 40 H 1.08999 * 109.47188 * 299.99995 * 23 21 20 41 41 H 1.08997 * 109.47621 * 60.00030 * 23 21 20 42 42 H 1.08999 * 109.47259 * 300.00097 * 24 21 20 43 43 H 1.09003 * 109.47615 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3465 1.9923 1.1827 5 1 2.1775 3.0516 1.3082 6 6 2.8966 1.2487 2.2196 7 7 3.5042 0.1121 1.9628 8 14 2.7725 1.8648 3.9787 9 1 3.9521 2.7109 4.2912 10 1 1.5326 2.6666 4.1359 11 1 2.7340 0.7065 4.9073 12 6 2.1450 2.0512 -1.1625 13 8 2.5489 3.1949 -1.1625 14 6 1.7837 1.3798 -2.4624 15 8 2.0016 2.2877 -3.5442 16 6 1.6885 1.7466 -4.8291 17 1 0.8909 1.0104 -4.7288 18 6 2.9314 1.0749 -5.4165 19 6 4.0510 2.1082 -5.5573 20 6 3.5923 3.2338 -6.4866 21 6 2.3493 3.9054 -5.8993 22 1 2.5881 4.3181 -4.9191 23 6 1.8909 5.0313 -6.8283 24 6 1.2298 2.8721 -5.7585 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8879 -0.4071 2.6867 31 1 2.4055 0.4949 -2.5993 32 1 0.7342 1.0865 -2.4405 33 1 3.2583 0.2731 -4.7544 34 1 2.6927 0.6626 -6.3967 35 1 4.9363 1.6300 -5.9761 36 1 4.2899 2.5210 -4.5771 37 1 3.3534 2.8211 -7.4668 38 1 4.3897 3.9702 -6.5866 39 1 1.0057 5.5101 -6.4097 40 1 2.6886 5.7673 -6.9282 41 1 1.6522 4.6191 -7.8087 42 1 0.9908 2.4594 -6.7386 43 1 0.3443 3.3505 -5.3397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522150291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:21 Heat of formation + Delta-G solvation = -100.974915 kcal Electronic energy + Delta-G solvation = -21768.943598 eV Core-core repulsion = 18620.549839 eV Total energy + Delta-G solvation = -3148.393759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.39358 -38.31543 -35.96323 -34.80161 -32.16375 -32.01186 -30.13009 -29.45517 -27.38145 -26.32621 -24.38721 -22.38224 -22.23603 -21.14417 -19.50200 -18.98673 -16.80465 -16.19423 -15.82563 -15.45874 -15.11589 -14.77747 -14.50584 -14.07404 -13.86068 -13.63418 -12.97815 -12.88205 -12.78012 -12.40643 -12.25195 -11.93696 -11.84152 -11.73226 -11.68031 -11.32885 -11.24194 -11.03687 -10.91862 -10.74186 -10.41544 -10.35373 -10.32062 -10.10230 -10.04865 -9.84106 -9.09715 -8.90749 -8.27978 -7.47075 -6.31810 -3.92156 3.18545 3.27142 3.32590 3.81459 3.94092 4.26571 4.77688 4.82650 4.88547 5.01637 5.14314 5.24063 5.29498 5.37386 5.53522 5.58730 5.62844 5.68981 5.71615 5.77247 5.84957 5.87689 5.91411 5.94467 5.99166 6.02673 6.12392 6.21683 6.32938 6.35670 6.38908 6.42874 6.49277 6.50796 6.71892 6.87269 7.25454 7.59018 7.61509 8.27388 8.55174 9.22277 9.42736 10.04530 10.72258 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.004428 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.661670 B = 6322.196013 C = 6526.518739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.441 5.441 4 C -0.304 4.304 5 H 0.092 0.908 6 C 0.034 3.966 7 N -0.871 5.871 8 Si 0.918 3.082 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.283 1.283 12 C 0.460 3.540 13 O -0.563 6.563 14 C 0.050 3.950 15 O -0.348 6.348 16 C 0.084 3.916 17 H 0.055 0.945 18 C -0.139 4.139 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.093 4.093 22 H 0.085 0.915 23 C -0.145 4.145 24 C -0.106 4.106 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.115 0.885 30 H 0.267 0.733 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 -1.467 -14.040 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.163 5.163 4 C -0.432 4.432 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.509 5.509 8 Si 0.744 3.256 9 H -0.203 1.203 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.247 3.753 13 O -0.445 6.445 14 C -0.030 4.030 15 O -0.266 6.266 16 C 0.026 3.974 17 H 0.073 0.927 18 C -0.177 4.177 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.111 4.111 22 H 0.104 0.896 23 C -0.203 4.203 24 C -0.143 4.143 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.046 -0.847 -13.899 14.501 hybrid contribution -0.130 -0.385 0.802 0.899 sum -4.176 -1.232 -13.097 13.802 Atomic orbital electron populations 1.22223 0.98216 1.00339 1.01555 1.21616 0.91745 0.85544 1.04139 1.43466 1.56406 1.11893 1.04522 1.19444 1.39758 0.95534 0.88419 0.89011 1.25323 0.94506 0.96545 1.00529 1.69927 1.32698 1.15446 1.32857 0.86076 0.79087 0.78329 0.82087 1.20287 1.19398 1.20827 1.19992 0.82889 0.88211 0.84189 1.90537 1.49051 1.18396 1.86467 1.22402 0.99725 0.92869 0.87997 1.88071 1.87569 1.38304 1.12694 1.22092 0.95497 0.95193 0.84655 0.92667 1.22005 0.96663 0.98415 1.00622 1.21429 0.96990 0.96024 1.00990 1.21550 0.97337 0.97604 0.98168 1.21077 0.94653 0.95071 1.00300 0.89622 1.21829 1.01055 0.98308 0.99079 1.21638 0.98540 0.96076 0.98054 0.93042 0.92276 0.94043 0.93643 0.86718 0.92265 0.91943 0.92180 0.91911 0.91662 0.92643 0.90582 0.92715 0.92315 0.92821 0.92905 0.93236 0.91295 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.15 37.16 0.38 -2.58 16 2 C 0.09 2.04 5.44 -4.04 -0.02 2.01 16 3 N -0.44 -11.39 2.56 -114.80 -0.29 -11.68 16 4 C -0.30 -8.55 8.98 -14.93 -0.13 -8.68 16 5 H 0.09 2.71 7.70 -52.49 -0.40 2.31 16 6 C 0.03 0.92 4.92 -17.47 -0.09 0.83 16 7 N -0.87 -23.46 11.34 55.50 0.63 -22.83 16 8 Si 0.92 20.66 29.61 -169.99 -5.03 15.63 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.46 11.78 7.67 -10.99 -0.08 11.70 16 13 O -0.56 -16.71 16.32 -14.36 -0.23 -16.95 16 14 C 0.05 0.99 4.83 36.01 0.17 1.16 16 15 O -0.35 -6.70 8.17 -55.14 -0.45 -7.15 16 16 C 0.08 1.20 2.92 -26.73 -0.08 1.12 16 17 H 0.06 0.71 7.79 -51.93 -0.40 0.30 16 18 C -0.14 -1.80 5.63 -26.73 -0.15 -1.95 16 19 C -0.12 -1.58 5.78 -26.73 -0.15 -1.73 16 20 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 21 C -0.09 -1.21 2.57 -90.62 -0.23 -1.44 16 22 H 0.09 1.40 7.68 -51.93 -0.40 1.01 16 23 C -0.15 -1.56 9.19 37.16 0.34 -1.22 16 24 C -0.11 -1.33 4.95 -26.73 -0.13 -1.46 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.70 6.61 -51.93 -0.34 0.35 16 28 H 0.05 0.89 6.65 -51.93 -0.35 0.55 16 29 H 0.12 2.74 5.35 -51.93 -0.28 2.47 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.06 1.15 7.14 -51.92 -0.37 0.78 16 32 H 0.06 1.05 6.49 -51.93 -0.34 0.71 16 33 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -31.54 336.38 -8.11 -39.65 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.47 Total: 1.95 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.32 Total: -3.69 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.34 Total: -34.51 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.69 Total: -24.10 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.54 -8.11 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522150291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.325 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds