Wall clock time and date at job start Mon Mar 30 2020 01:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47227 * 2 1 4 4 C 1.37103 * 119.99702 * 95.10642 * 3 2 1 5 5 H 1.08002 * 119.99530 * 213.89437 * 4 3 2 6 6 C 1.38950 * 120.00105 * 33.89911 * 4 3 2 7 7 N 1.31417 * 119.99983 * 22.40207 * 6 4 3 8 8 Si 1.86798 * 120.00070 * 202.39888 * 6 4 3 9 9 H 1.48493 * 109.47207 * 270.00454 * 8 6 4 10 10 H 1.48500 * 109.46516 * 30.00102 * 8 6 4 11 11 H 1.48498 * 109.47105 * 149.99657 * 8 6 4 12 12 C 1.34768 * 119.99937 * 275.10887 * 3 2 1 13 13 O 1.21296 * 119.99905 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00332 * 0.02562 * 12 3 2 15 15 O 1.42899 * 109.47412 * 179.97438 * 14 12 3 16 16 C 1.42892 * 113.99997 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47228 * 29.99820 * 16 15 14 18 18 C 1.53004 * 109.47423 * 269.99977 * 16 15 14 19 19 C 1.53004 * 109.47008 * 300.00221 * 18 16 15 20 20 C 1.53006 * 109.47040 * 299.99631 * 19 18 16 21 21 C 1.53001 * 109.46861 * 59.99936 * 20 19 18 22 22 H 1.09006 * 109.47417 * 59.99854 * 21 20 19 23 23 C 1.52997 * 109.47039 * 179.97438 * 21 20 19 24 24 C 1.52996 * 109.47553 * 300.00012 * 21 20 19 25 25 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46897 * 299.99989 * 1 2 3 27 27 H 1.08995 * 109.47292 * 59.99688 * 1 2 3 28 28 H 1.08998 * 109.47203 * 240.00285 * 2 1 3 29 29 H 1.09005 * 109.47270 * 119.99767 * 2 1 3 30 30 H 0.96999 * 120.00125 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.46537 * 299.99579 * 14 12 3 32 32 H 1.08995 * 109.47202 * 59.99285 * 14 12 3 33 33 H 1.08999 * 109.47005 * 59.99814 * 18 16 15 34 34 H 1.08991 * 109.47195 * 180.02562 * 18 16 15 35 35 H 1.08994 * 109.47309 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.47192 * 59.99292 * 19 18 16 37 37 H 1.08999 * 109.47096 * 300.00363 * 20 19 18 38 38 H 1.08999 * 109.47239 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.47465 * 180.02562 * 23 21 20 40 40 H 1.08999 * 109.47188 * 299.99995 * 23 21 20 41 41 H 1.08997 * 109.47621 * 60.00030 * 23 21 20 42 42 H 1.08999 * 109.47259 * 300.00097 * 24 21 20 43 43 H 1.09003 * 109.47615 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3465 1.9923 1.1827 5 1 2.1775 3.0516 1.3082 6 6 2.8966 1.2487 2.2196 7 7 3.5042 0.1121 1.9628 8 14 2.7725 1.8648 3.9787 9 1 3.9521 2.7109 4.2912 10 1 1.5326 2.6666 4.1359 11 1 2.7340 0.7065 4.9073 12 6 2.1450 2.0512 -1.1625 13 8 2.5489 3.1949 -1.1625 14 6 1.7837 1.3798 -2.4624 15 8 2.0016 2.2877 -3.5442 16 6 1.6885 1.7466 -4.8291 17 1 0.8909 1.0104 -4.7288 18 6 2.9314 1.0749 -5.4165 19 6 4.0510 2.1082 -5.5573 20 6 3.5923 3.2338 -6.4866 21 6 2.3493 3.9054 -5.8993 22 1 2.5881 4.3181 -4.9191 23 6 1.8909 5.0313 -6.8283 24 6 1.2298 2.8721 -5.7585 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8879 -0.4071 2.6867 31 1 2.4055 0.4949 -2.5993 32 1 0.7342 1.0865 -2.4405 33 1 3.2583 0.2731 -4.7544 34 1 2.6927 0.6626 -6.3967 35 1 4.9363 1.6300 -5.9761 36 1 4.2899 2.5210 -4.5771 37 1 3.3534 2.8211 -7.4668 38 1 4.3897 3.9702 -6.5866 39 1 1.0057 5.5101 -6.4097 40 1 2.6886 5.7673 -6.9282 41 1 1.6522 4.6191 -7.8087 42 1 0.9908 2.4594 -6.7386 43 1 0.3443 3.3505 -5.3397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522150291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:20 Heat of formation + Delta-G solvation = -118.901018 kcal Electronic energy + Delta-G solvation = -21769.720932 eV Core-core repulsion = 18620.549839 eV Total energy + Delta-G solvation = -3149.171093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79951 -39.95426 -37.35662 -36.72305 -34.05567 -33.13917 -31.30663 -31.16071 -29.05260 -27.26230 -26.31087 -23.93943 -23.42796 -22.17075 -21.04606 -20.41773 -18.77919 -17.89635 -17.17550 -17.12942 -16.65952 -16.12386 -16.01981 -15.57952 -15.26400 -14.88813 -14.57878 -14.37281 -14.14847 -13.64634 -13.56011 -13.48308 -13.13084 -13.05892 -12.89533 -12.73787 -12.69181 -12.61293 -12.36730 -12.17925 -12.08241 -11.86355 -11.77768 -11.41741 -11.16693 -10.94303 -10.84565 -10.35175 -10.28637 -9.49606 -8.36661 -6.06046 1.36327 1.40948 1.53934 1.98589 2.21508 2.55570 2.98977 3.37614 3.78930 3.82345 3.91059 4.01341 4.11137 4.22365 4.29869 4.30469 4.40915 4.43444 4.55782 4.62445 4.63731 4.72445 4.83482 4.83802 4.91682 4.94496 5.00119 5.02170 5.05332 5.17934 5.30337 5.34384 5.38590 5.44137 5.45599 5.47145 5.55931 5.66765 6.13850 6.32639 6.57640 7.17189 7.43201 8.04714 8.65912 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.004428 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.661670 B = 6322.196013 C = 6526.518739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.090 3.910 3 N -0.450 5.450 4 C -0.344 4.344 5 H 0.061 0.939 6 C 0.006 3.994 7 N -0.886 5.886 8 Si 0.982 3.018 9 H -0.279 1.279 10 H -0.268 1.268 11 H -0.263 1.263 12 C 0.439 3.561 13 O -0.622 6.622 14 C 0.068 3.932 15 O -0.381 6.381 16 C 0.072 3.928 17 H 0.078 0.922 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.104 4.104 21 C -0.095 4.095 22 H 0.036 0.964 23 C -0.140 4.140 24 C -0.103 4.103 25 H 0.089 0.911 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.275 0.725 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.617 -3.365 -15.693 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.033 4.033 3 N -0.170 5.170 4 C -0.472 4.472 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.524 5.524 8 Si 0.805 3.195 9 H -0.205 1.205 10 H -0.192 1.192 11 H -0.187 1.187 12 C 0.229 3.771 13 O -0.508 6.508 14 C -0.012 4.012 15 O -0.300 6.300 16 C 0.015 3.985 17 H 0.096 0.904 18 C -0.174 4.174 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.114 4.114 22 H 0.054 0.946 23 C -0.197 4.197 24 C -0.141 4.141 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.261 -2.798 -15.560 16.662 hybrid contribution 0.302 0.192 1.300 1.348 sum -4.959 -2.606 -14.261 15.322 Atomic orbital electron populations 1.22114 0.95070 1.02707 1.01322 1.21777 0.94315 0.83161 1.04018 1.43773 1.55904 1.13233 1.04114 1.19378 1.42324 0.94897 0.90611 0.92124 1.26064 0.93286 0.96553 1.03803 1.69983 1.32125 1.15966 1.34325 0.85129 0.78753 0.78322 0.77274 1.20526 1.19247 1.18719 1.21046 0.82097 0.87832 0.86159 1.90483 1.51729 1.21030 1.87604 1.22147 1.01364 0.92230 0.85449 1.88071 1.88158 1.39306 1.14418 1.22495 0.96902 0.96450 0.82682 0.90450 1.22018 0.95538 0.97670 1.02144 1.21424 0.98276 0.96938 0.99014 1.21532 0.96718 0.97018 0.98891 1.21044 0.95731 0.96152 0.98458 0.94574 1.21782 1.00852 0.97549 0.99559 1.21691 0.97701 0.95408 0.99254 0.89254 0.93983 0.92829 0.91542 0.88894 0.91487 0.90435 0.89335 0.92684 0.88152 0.91149 0.95265 0.89726 0.92473 0.93180 0.92871 0.90798 0.87705 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 10.15 71.98 0.73 -4.51 16 2 C 0.09 3.87 5.44 86.38 0.47 4.34 16 3 N -0.45 -23.86 2.56 -635.52 -1.62 -25.49 16 4 C -0.34 -20.17 8.98 84.04 0.75 -19.42 16 5 H 0.06 3.84 7.70 -2.91 -0.02 3.82 16 6 C 0.01 0.30 4.92 84.93 0.42 0.72 16 7 N -0.89 -47.90 11.34 21.66 0.25 -47.65 16 8 Si 0.98 42.76 29.61 68.60 2.03 44.79 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 12 C 0.44 23.37 7.67 87.66 0.67 24.04 16 13 O -0.62 -39.40 16.32 15.95 0.26 -39.14 16 14 C 0.07 2.66 4.83 71.24 0.34 3.01 16 15 O -0.38 -14.88 8.17 -129.95 -1.06 -15.94 16 16 C 0.07 1.92 2.92 30.60 0.09 2.01 16 17 H 0.08 1.72 7.79 -2.39 -0.02 1.70 16 18 C -0.14 -3.21 5.63 30.60 0.17 -3.04 16 19 C -0.12 -3.15 5.78 30.60 0.18 -2.98 16 20 C -0.10 -2.35 5.20 30.60 0.16 -2.19 16 21 C -0.10 -2.43 2.57 -10.80 -0.03 -2.46 16 22 H 0.04 1.27 7.68 -2.38 -0.02 1.25 16 23 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 24 C -0.10 -2.38 4.95 30.59 0.15 -2.23 16 25 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.05 1.68 6.61 -2.39 -0.02 1.66 16 28 H 0.07 2.51 6.65 -2.39 -0.02 2.50 16 29 H 0.09 4.43 5.35 -2.38 -0.01 4.41 16 30 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 31 H 0.08 2.77 7.14 -2.38 -0.02 2.76 16 32 H 0.09 2.93 6.49 -2.39 -0.02 2.91 16 33 H 0.05 1.37 7.87 -2.39 -0.02 1.35 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.03 1.03 7.68 -2.39 -0.02 1.01 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -73.64 336.38 5.59 -68.06 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.96 Total: 20.23 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 4.77 Total: -4.86 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.38 Total: -73.14 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.80 Total: -55.08 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -73.64 5.59 -68.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522150291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.846 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds