Wall clock time and date at job start Mon Mar 30 2020 00:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.46938 * 2 1 4 4 C 1.50706 * 109.47325 * 119.99540 * 2 1 3 5 5 H 1.08002 * 119.99356 * 114.36872 * 4 2 1 6 6 C 1.37877 * 120.00116 * 294.37316 * 4 2 1 7 7 N 1.31510 * 119.99957 * 157.15012 * 6 4 2 8 8 Si 1.86799 * 120.00009 * 337.14725 * 6 4 2 9 9 H 1.48496 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47245 * 60.00265 * 8 6 4 11 11 H 1.48497 * 109.47243 * 300.00183 * 8 6 4 12 12 N 1.46494 * 109.47032 * 240.00273 * 2 1 3 13 13 C 1.46500 * 119.99749 * 299.99299 * 12 2 1 14 14 C 1.34780 * 120.00250 * 120.00233 * 12 2 1 15 15 O 1.21276 * 119.99651 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 12 2 17 17 C 1.52999 * 109.47249 * 179.97438 * 16 14 12 18 18 H 1.08996 * 109.47391 * 305.00410 * 17 16 14 19 19 C 1.53007 * 109.46658 * 65.00257 * 17 16 14 20 20 C 1.52999 * 109.46658 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47174 * 299.99921 * 20 19 17 22 22 C 1.52997 * 109.47326 * 60.00508 * 21 20 19 23 23 C 1.52998 * 109.47174 * 185.00178 * 17 16 14 24 24 H 1.08999 * 109.47005 * 299.99868 * 23 17 16 25 25 O 1.42895 * 109.47327 * 60.00105 * 23 17 16 26 26 H 1.09004 * 109.47182 * 293.29554 * 1 2 3 27 27 H 1.09004 * 109.47399 * 53.28961 * 1 2 3 28 28 H 1.08993 * 109.47101 * 173.29276 * 1 2 3 29 29 H 0.97003 * 119.99465 * 354.91849 * 7 6 4 30 30 H 1.08997 * 109.47065 * 90.00843 * 13 12 2 31 31 H 1.09004 * 109.47338 * 210.00001 * 13 12 2 32 32 H 1.08994 * 109.47566 * 330.00517 * 13 12 2 33 33 H 1.09003 * 109.47462 * 300.00090 * 16 14 12 34 34 H 1.09005 * 109.47108 * 59.99877 * 16 14 12 35 35 H 1.08996 * 109.47075 * 299.99628 * 19 17 16 36 36 H 1.08996 * 109.47094 * 59.99971 * 19 17 16 37 37 H 1.09003 * 109.47112 * 180.02562 * 20 19 17 38 38 H 1.09005 * 109.47634 * 60.00112 * 20 19 17 39 39 H 1.08999 * 109.47005 * 299.99868 * 21 20 19 40 40 H 1.09004 * 109.47028 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47137 * 180.02562 * 22 21 20 42 42 H 1.08999 * 109.47601 * 59.99726 * 22 21 20 43 43 H 0.96698 * 114.00269 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4795 7 7 1.8130 -0.9519 3.5408 8 14 1.4577 1.6521 2.6640 9 1 1.2401 1.9728 4.0975 10 1 0.2447 2.0110 1.8863 11 1 2.6188 2.4254 2.1550 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7931 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3135 17 6 4.1453 0.2158 -4.1467 18 1 3.5668 1.1124 -4.3686 19 6 5.4001 0.6001 -3.3601 20 6 6.2499 1.5615 -4.1935 21 6 6.6567 0.8797 -5.5014 22 6 5.4020 0.4953 -6.2880 23 6 4.5522 -0.4655 -5.4548 24 1 5.1308 -1.3621 -5.2329 25 8 3.3803 -0.8245 -6.1895 26 1 -0.3634 0.4064 0.9439 27 1 -0.3634 0.6143 -0.8239 28 1 -0.3633 -1.0206 -0.1200 29 1 1.9161 -1.9110 3.4385 30 1 0.7376 -2.1444 -1.9993 31 1 2.4629 -2.5818 -1.9863 32 1 1.5295 -2.5968 -0.4708 33 1 3.9016 -1.6023 -3.0166 34 1 2.4483 -1.0890 -3.9069 35 1 5.1103 1.0855 -2.4282 36 1 5.9787 -0.2965 -3.1381 37 1 7.1441 1.8350 -3.6334 38 1 5.6715 2.4583 -4.4159 39 1 7.2351 -0.0170 -5.2790 40 1 7.2625 1.5644 -6.0949 41 1 5.6918 0.0092 -7.2195 42 1 4.8236 1.3920 -6.5104 43 1 3.5630 -1.2624 -7.0320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537248091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:09 Heat of formation + Delta-G solvation = -112.032442 kcal Electronic energy + Delta-G solvation = -21860.982977 eV Core-core repulsion = 18712.109727 eV Total energy + Delta-G solvation = -3148.873249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85576 -38.48543 -35.72831 -35.29178 -32.96808 -32.35802 -30.20575 -29.62955 -26.78338 -26.06142 -24.70581 -22.74378 -21.94942 -20.45205 -19.80799 -18.14257 -17.48423 -17.31568 -16.42358 -15.38087 -15.17911 -15.06750 -14.44997 -14.02317 -13.91748 -13.53862 -13.12028 -12.92457 -12.69437 -12.62990 -12.38512 -12.14252 -11.80215 -11.68642 -11.54741 -11.49700 -11.24753 -11.18492 -10.90091 -10.65592 -10.46187 -10.34970 -10.17923 -10.01867 -9.85070 -9.74110 -9.12114 -8.85284 -8.27144 -7.69466 -6.48057 -4.10398 3.37855 3.42880 3.51272 3.65585 3.90296 4.10866 4.50155 4.59856 4.65517 4.89015 5.08795 5.11614 5.18565 5.26703 5.30827 5.36521 5.46760 5.57657 5.62205 5.70210 5.82023 5.91374 5.93822 5.99617 6.02402 6.16770 6.21345 6.26713 6.32881 6.41070 6.48999 6.55119 6.62298 6.66156 7.00211 7.22585 7.52302 7.55640 7.91159 8.33040 8.42506 8.81528 9.03912 9.54704 10.86573 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027477 B = 0.004877 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.787898 B = 5739.591641 C = 6223.730889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.234 3.766 3 H 0.054 0.946 4 C -0.616 4.616 5 H 0.061 0.939 6 C 0.043 3.957 7 N -0.895 5.895 8 Si 1.032 2.968 9 H -0.284 1.284 10 H -0.276 1.276 11 H -0.279 1.279 12 N -0.589 5.589 13 C 0.085 3.915 14 C 0.505 3.495 15 O -0.554 6.554 16 C -0.132 4.132 17 C -0.059 4.059 18 H 0.083 0.917 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.149 4.149 23 C 0.108 3.892 24 H 0.053 0.947 25 O -0.565 6.565 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.045 0.955 29 H 0.269 0.731 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.752 -1.025 -19.160 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.653 4.653 5 H 0.079 0.921 6 C -0.164 4.164 7 N -0.528 5.528 8 Si 0.859 3.141 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.205 1.205 12 N -0.320 5.320 13 C -0.059 4.059 14 C 0.292 3.708 15 O -0.434 6.434 16 C -0.172 4.172 17 C -0.078 4.078 18 H 0.101 0.899 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.187 4.187 23 C 0.050 3.950 24 H 0.071 0.929 25 O -0.370 6.370 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.330 1.023 -17.368 18.196 hybrid contribution 0.551 -1.759 -1.638 2.466 sum 5.881 -0.736 -19.006 19.909 Atomic orbital electron populations 1.22417 0.98827 1.00066 1.00008 1.19142 0.90275 0.94721 0.82613 0.92834 1.22111 1.41150 1.11077 0.90992 0.92081 1.25618 0.93242 1.05690 0.91847 1.70869 1.43846 1.06335 1.31752 0.84211 0.77671 0.76119 0.76055 1.20983 1.20210 1.20539 1.47974 1.49316 1.11656 1.23071 1.21594 0.98885 0.83085 1.02291 1.20504 0.78842 0.87151 0.84276 1.90582 1.58403 1.17311 1.77123 1.21676 1.01113 0.99173 0.95215 1.20844 0.96814 0.98388 0.91742 0.89885 1.21734 0.94563 0.99302 1.00208 1.21546 0.99747 0.98866 0.95543 1.21504 0.96725 1.00525 0.96713 1.22233 0.97349 1.00707 0.98411 1.21885 0.85576 0.95926 0.91637 0.92901 1.86557 1.32641 1.81275 1.36553 0.92076 0.95627 0.93584 0.92139 0.93868 0.92607 0.90182 0.89847 0.88769 0.88652 0.92641 0.91940 0.91803 0.92057 0.92040 0.92099 0.91124 0.78102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.02 37.15 0.34 -3.15 16 2 C 0.23 5.83 2.23 -69.09 -0.15 5.67 16 3 H 0.05 1.45 5.48 -51.92 -0.28 1.17 16 4 C -0.62 -17.15 8.30 -34.44 -0.29 -17.43 16 5 H 0.06 1.80 7.38 -52.49 -0.39 1.42 16 6 C 0.04 1.23 5.20 -17.82 -0.09 1.14 16 7 N -0.90 -27.01 13.70 55.43 0.76 -26.25 16 8 Si 1.03 25.72 26.44 -169.99 -4.49 21.23 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.41 6.12 56.52 0.35 -6.07 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.59 -12.64 2.75 -175.27 -0.48 -13.12 16 13 C 0.09 1.48 9.10 59.85 0.54 2.03 16 14 C 0.50 10.33 7.39 -10.99 -0.08 10.25 16 15 O -0.55 -13.05 13.29 5.56 0.07 -12.97 16 16 C -0.13 -2.03 3.65 -27.89 -0.10 -2.13 16 17 C -0.06 -0.84 1.58 -90.62 -0.14 -0.98 16 18 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 19 C -0.12 -1.71 4.95 -26.73 -0.13 -1.85 16 20 C -0.12 -1.40 5.92 -26.73 -0.16 -1.55 16 21 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 22 C -0.15 -1.40 5.54 -26.76 -0.15 -1.55 16 23 C 0.11 1.19 2.90 -26.76 -0.08 1.11 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 O -0.57 -6.15 12.56 -35.23 -0.44 -6.59 16 26 H 0.06 1.42 5.44 -51.93 -0.28 1.14 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.97 7.45 -51.93 -0.39 0.58 16 29 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 32 H 0.08 1.52 6.92 -51.93 -0.36 1.16 16 33 H 0.08 1.17 7.40 -51.93 -0.38 0.78 16 34 H 0.09 1.38 7.50 -51.93 -0.39 1.00 16 35 H 0.10 1.70 5.95 -51.93 -0.31 1.39 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.37 2.34 9.08 45.56 0.41 2.76 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -32.47 327.92 -6.85 -39.32 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.55 Total: 3.17 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -0.65 Total: -9.72 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.28 Total: -39.37 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.37 Total: -19.57 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -4.49 Total: 21.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.47 -6.85 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537248091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.717 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds