Wall clock time and date at job start Mon Mar 30 2020 00:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.46938 * 2 1 4 4 C 1.50706 * 109.47325 * 119.99540 * 2 1 3 5 5 H 1.08002 * 119.99356 * 114.36872 * 4 2 1 6 6 C 1.37877 * 120.00116 * 294.37316 * 4 2 1 7 7 N 1.31510 * 119.99957 * 157.15012 * 6 4 2 8 8 Si 1.86799 * 120.00009 * 337.14725 * 6 4 2 9 9 H 1.48496 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47245 * 60.00265 * 8 6 4 11 11 H 1.48497 * 109.47243 * 300.00183 * 8 6 4 12 12 N 1.46494 * 109.47032 * 240.00273 * 2 1 3 13 13 C 1.46500 * 119.99749 * 299.99299 * 12 2 1 14 14 C 1.34780 * 120.00250 * 120.00233 * 12 2 1 15 15 O 1.21276 * 119.99651 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 12 2 17 17 C 1.52999 * 109.47249 * 179.97438 * 16 14 12 18 18 H 1.08996 * 109.47391 * 305.00410 * 17 16 14 19 19 C 1.53007 * 109.46658 * 65.00257 * 17 16 14 20 20 C 1.52999 * 109.46658 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47174 * 299.99921 * 20 19 17 22 22 C 1.52997 * 109.47326 * 60.00508 * 21 20 19 23 23 C 1.52998 * 109.47174 * 185.00178 * 17 16 14 24 24 H 1.08999 * 109.47005 * 299.99868 * 23 17 16 25 25 O 1.42895 * 109.47327 * 60.00105 * 23 17 16 26 26 H 1.09004 * 109.47182 * 293.29554 * 1 2 3 27 27 H 1.09004 * 109.47399 * 53.28961 * 1 2 3 28 28 H 1.08993 * 109.47101 * 173.29276 * 1 2 3 29 29 H 0.97003 * 119.99465 * 354.91849 * 7 6 4 30 30 H 1.08997 * 109.47065 * 90.00843 * 13 12 2 31 31 H 1.09004 * 109.47338 * 210.00001 * 13 12 2 32 32 H 1.08994 * 109.47566 * 330.00517 * 13 12 2 33 33 H 1.09003 * 109.47462 * 300.00090 * 16 14 12 34 34 H 1.09005 * 109.47108 * 59.99877 * 16 14 12 35 35 H 1.08996 * 109.47075 * 299.99628 * 19 17 16 36 36 H 1.08996 * 109.47094 * 59.99971 * 19 17 16 37 37 H 1.09003 * 109.47112 * 180.02562 * 20 19 17 38 38 H 1.09005 * 109.47634 * 60.00112 * 20 19 17 39 39 H 1.08999 * 109.47005 * 299.99868 * 21 20 19 40 40 H 1.09004 * 109.47028 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47137 * 180.02562 * 22 21 20 42 42 H 1.08999 * 109.47601 * 59.99726 * 22 21 20 43 43 H 0.96698 * 114.00269 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4795 7 7 1.8130 -0.9519 3.5408 8 14 1.4577 1.6521 2.6640 9 1 1.2401 1.9728 4.0975 10 1 0.2447 2.0110 1.8863 11 1 2.6188 2.4254 2.1550 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7931 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3135 17 6 4.1453 0.2158 -4.1467 18 1 3.5668 1.1124 -4.3686 19 6 5.4001 0.6001 -3.3601 20 6 6.2499 1.5615 -4.1935 21 6 6.6567 0.8797 -5.5014 22 6 5.4020 0.4953 -6.2880 23 6 4.5522 -0.4655 -5.4548 24 1 5.1308 -1.3621 -5.2329 25 8 3.3803 -0.8245 -6.1895 26 1 -0.3634 0.4064 0.9439 27 1 -0.3634 0.6143 -0.8239 28 1 -0.3633 -1.0206 -0.1200 29 1 1.9161 -1.9110 3.4385 30 1 0.7376 -2.1444 -1.9993 31 1 2.4629 -2.5818 -1.9863 32 1 1.5295 -2.5968 -0.4708 33 1 3.9016 -1.6023 -3.0166 34 1 2.4483 -1.0890 -3.9069 35 1 5.1103 1.0855 -2.4282 36 1 5.9787 -0.2965 -3.1381 37 1 7.1441 1.8350 -3.6334 38 1 5.6715 2.4583 -4.4159 39 1 7.2351 -0.0170 -5.2790 40 1 7.2625 1.5644 -6.0949 41 1 5.6918 0.0092 -7.2195 42 1 4.8236 1.3920 -6.5104 43 1 3.5630 -1.2624 -7.0320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537248091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:09 Heat of formation + Delta-G solvation = -135.068582 kcal Electronic energy + Delta-G solvation = -21861.981898 eV Core-core repulsion = 18712.109727 eV Total energy + Delta-G solvation = -3149.872171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.20435 -39.69800 -37.26318 -36.37390 -34.89958 -33.68720 -31.96662 -30.55561 -28.00421 -27.55616 -26.77499 -23.77565 -23.17550 -21.89970 -20.80101 -19.86706 -19.53289 -18.14685 -17.97072 -16.95592 -16.62959 -16.12112 -15.66869 -15.46075 -15.14703 -14.89159 -14.60465 -14.30792 -14.18836 -13.92378 -13.74427 -13.51998 -13.50616 -13.20665 -13.01554 -12.90269 -12.52236 -12.44522 -12.25522 -11.96318 -11.91293 -11.72495 -11.59659 -11.35287 -11.24464 -11.15516 -10.69250 -10.47735 -10.40696 -9.48128 -8.72509 -6.38411 1.41366 1.48027 1.68066 1.79267 2.33788 2.41357 2.96077 3.30796 3.64399 3.65924 3.93417 4.05734 4.17749 4.28550 4.29774 4.41218 4.45752 4.47774 4.50057 4.57689 4.62681 4.67265 4.70762 4.78188 4.82754 4.93457 4.98384 5.07045 5.12102 5.19433 5.23289 5.25722 5.30560 5.37646 5.47235 5.54508 5.73391 5.82816 6.03543 6.55918 6.75809 6.99972 7.27969 7.43006 8.57688 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027477 B = 0.004877 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.787898 B = 5739.591641 C = 6223.730889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.233 3.767 3 H 0.029 0.971 4 C -0.611 4.611 5 H 0.034 0.966 6 C 0.000 4.000 7 N -0.923 5.923 8 Si 1.066 2.934 9 H -0.279 1.279 10 H -0.248 1.248 11 H -0.283 1.283 12 N -0.602 5.602 13 C 0.084 3.916 14 C 0.494 3.506 15 O -0.593 6.593 16 C -0.118 4.118 17 C -0.059 4.059 18 H 0.054 0.946 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.145 4.145 23 C 0.117 3.883 24 H 0.071 0.929 25 O -0.582 6.582 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.259 0.741 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -1.668 -21.994 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.047 0.953 4 C -0.649 4.649 5 H 0.052 0.948 6 C -0.201 4.201 7 N -0.557 5.557 8 Si 0.889 3.111 9 H -0.205 1.205 10 H -0.173 1.173 11 H -0.210 1.210 12 N -0.332 5.332 13 C -0.059 4.059 14 C 0.284 3.716 15 O -0.475 6.475 16 C -0.158 4.158 17 C -0.078 4.078 18 H 0.072 0.928 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.183 4.183 23 C 0.058 3.942 24 H 0.089 0.911 25 O -0.390 6.390 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.575 0.342 -20.247 21.003 hybrid contribution 0.515 -1.608 -0.787 1.863 sum 6.090 -1.267 -21.034 21.934 Atomic orbital electron populations 1.22256 0.96743 1.01200 1.00261 1.18886 0.91780 0.93320 0.83032 0.95349 1.22243 1.40176 1.09972 0.92553 0.94765 1.26698 0.93024 1.08529 0.91879 1.70960 1.46333 1.05917 1.32534 0.83757 0.78579 0.72183 0.76630 1.20451 1.17278 1.20964 1.48077 1.49664 1.13234 1.22241 1.21775 1.01402 0.80761 1.01932 1.21455 0.77856 0.86972 0.85313 1.90568 1.59452 1.19292 1.78162 1.21674 1.01940 0.99374 0.92806 1.20820 0.96022 0.97400 0.93580 0.92777 1.21641 0.95323 0.99922 0.98810 1.21533 0.99211 0.98061 0.96832 1.21483 0.97102 1.01122 0.95231 1.22211 0.96727 1.00065 0.99303 1.21728 0.85802 0.96559 0.90119 0.91132 1.86496 1.32776 1.81728 1.38013 0.92997 0.93764 0.92390 0.93215 0.91258 0.89409 0.92419 0.87805 0.87276 0.93131 0.91504 0.91555 0.93133 0.90795 0.90459 0.89156 0.92437 0.75563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.42 9.02 71.98 0.65 -5.77 16 2 C 0.23 11.64 2.23 44.25 0.10 11.74 16 3 H 0.03 1.57 5.48 -2.38 -0.01 1.56 16 4 C -0.61 -34.78 8.30 25.60 0.21 -34.57 16 5 H 0.03 2.09 7.38 -2.91 -0.02 2.07 16 6 C 0.00 0.01 5.20 84.66 0.44 0.45 16 7 N -0.92 -56.91 13.70 21.45 0.29 -56.61 16 8 Si 1.07 52.41 26.44 68.60 1.81 54.23 16 9 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 10 H -0.25 -11.04 6.12 99.48 0.61 -10.43 16 11 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 12 N -0.60 -25.50 2.75 -826.81 -2.28 -27.77 16 13 C 0.08 2.76 9.10 127.77 1.16 3.93 16 14 C 0.49 20.15 7.39 87.66 0.65 20.80 16 15 O -0.59 -28.73 13.29 -3.02 -0.04 -28.77 16 16 C -0.12 -3.44 3.65 29.85 0.11 -3.33 16 17 C -0.06 -1.61 1.58 -10.79 -0.02 -1.63 16 18 H 0.05 1.78 7.96 -2.39 -0.02 1.76 16 19 C -0.12 -3.36 4.95 30.60 0.15 -3.21 16 20 C -0.12 -2.68 5.92 30.59 0.18 -2.50 16 21 C -0.11 -1.78 5.92 30.59 0.18 -1.60 16 22 C -0.15 -2.26 5.54 30.58 0.17 -2.09 16 23 C 0.12 2.19 2.90 30.58 0.09 2.28 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 O -0.58 -10.64 12.56 -148.98 -1.87 -12.51 16 26 H 0.05 2.35 5.44 -2.38 -0.01 2.33 16 27 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.06 2.36 7.45 -2.39 -0.02 2.35 16 29 H 0.26 15.95 8.73 -92.71 -0.81 15.14 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 2.30 6.44 -2.38 -0.02 2.28 16 32 H 0.06 2.16 6.92 -2.39 -0.02 2.14 16 33 H 0.10 2.60 7.40 -2.39 -0.02 2.59 16 34 H 0.11 2.88 7.50 -2.38 -0.02 2.86 16 35 H 0.05 1.88 5.95 -2.39 -0.01 1.87 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.39 3.34 9.08 -74.06 -0.67 2.67 16 Total: -1.00 -72.98 327.92 2.18 -70.81 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.18 Total: 16.15 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 4.08 Total: -15.52 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.98 Total: -84.39 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.91 Total: -41.28 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 1.81 Total: 54.23 kcal Total: -72.98 2.18 -70.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537248091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.263 kcal (2) G-P(sol) polarization free energy of solvation -72.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds