Wall clock time and date at job start Mon Mar 30 2020 01:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 4 9 9 N 1.46901 * 109.47859 * 179.97438 * 8 7 6 10 10 C 1.46848 * 110.99510 * 294.21467 * 9 8 7 11 11 C 1.53048 * 109.52064 * 174.15537 * 10 9 8 12 12 C 1.53118 * 109.27745 * 59.17773 * 11 10 9 13 13 C 1.50696 * 109.57248 * 182.40887 * 12 11 10 14 14 H 1.08009 * 119.99700 * 119.71572 * 13 12 11 15 15 C 1.37871 * 120.00268 * 299.71086 * 13 12 11 16 16 N 1.31514 * 119.99941 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46917 * 90.00128 * 17 15 13 19 19 H 1.48501 * 109.46990 * 210.00449 * 17 15 13 20 20 H 1.48497 * 109.46956 * 330.00412 * 17 15 13 21 21 C 1.53120 * 109.16026 * 302.34502 * 12 11 10 22 22 C 1.46844 * 111.00526 * 170.00090 * 9 8 7 23 23 H 1.08998 * 109.47698 * 59.99951 * 1 2 3 24 24 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47066 * 299.99718 * 1 2 3 26 26 H 1.09001 * 109.46829 * 239.99566 * 2 1 3 27 27 H 1.08998 * 109.47230 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47060 * 299.99765 * 6 4 3 29 29 H 1.09001 * 109.47380 * 59.99853 * 6 4 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 7 6 4 31 31 H 1.08998 * 109.47533 * 59.99628 * 7 6 4 32 32 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 33 33 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 34 34 H 1.08996 * 109.46339 * 294.16557 * 10 9 8 35 35 H 1.08994 * 109.46869 * 54.14232 * 10 9 8 36 36 H 1.08998 * 109.49998 * 299.23732 * 11 10 9 37 37 H 1.08994 * 109.50211 * 179.11499 * 11 10 9 38 38 H 1.09002 * 109.52451 * 62.24612 * 12 11 10 39 39 H 0.96999 * 119.99675 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.50479 * 297.71302 * 21 12 11 41 41 H 1.08998 * 109.50625 * 177.59615 * 21 12 11 42 42 H 1.09003 * 109.46077 * 305.85847 * 22 9 8 43 43 H 1.08995 * 109.45945 * 65.83669 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 6 6.0334 4.2710 -0.0002 9 7 7.5004 4.1943 0.0003 10 6 7.9961 3.6055 1.2509 11 6 9.5108 3.4071 1.1577 12 6 10.1832 4.7596 0.9068 13 6 11.6697 4.5639 0.7550 14 1 12.1608 4.8487 -0.1639 15 6 12.4028 4.0215 1.7890 16 7 11.8047 3.6745 2.9077 17 14 14.2456 3.7796 1.6011 18 1 14.9548 4.9981 2.0674 19 1 14.6772 2.6140 2.4137 20 1 14.5694 3.5345 0.1728 21 6 9.6143 5.3735 -0.3754 22 6 8.0967 5.5149 -0.2378 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.5844 3.4700 -0.8895 29 1 3.5852 3.4690 0.8905 30 1 5.7846 2.3248 0.8896 31 1 5.7845 2.3255 -0.8903 32 1 5.6974 4.8032 -0.8902 33 1 5.6976 4.8032 0.8898 34 1 7.7677 4.2727 2.0820 35 1 7.5132 2.6423 1.4154 36 1 9.7390 2.7290 0.3354 37 1 9.8806 2.9847 2.0919 38 1 9.9874 5.4254 1.7473 39 1 12.3206 3.2932 3.6353 40 1 9.8443 4.7264 -1.2219 41 1 10.0581 6.3559 -0.5366 42 1 7.6867 5.9385 -1.1547 43 1 7.8679 6.1730 0.6003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541953838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:19 Heat of formation + Delta-G solvation = -108.676409 kcal Electronic energy + Delta-G solvation = -20586.151898 eV Core-core repulsion = 17437.424177 eV Total energy + Delta-G solvation = -3148.727721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61152 -38.35312 -36.91561 -34.81332 -32.97656 -31.99821 -30.84644 -29.74826 -27.30403 -25.14842 -23.48862 -22.46942 -21.92625 -21.00345 -20.28196 -18.54608 -17.78836 -16.98612 -16.53369 -16.25106 -15.35500 -15.09273 -14.40833 -14.35212 -13.90480 -13.56626 -13.39696 -13.10334 -12.85553 -12.54240 -12.47815 -12.24303 -11.94674 -11.88710 -11.81256 -11.28932 -11.23214 -10.90955 -10.79921 -10.70506 -10.58884 -10.53962 -10.34619 -10.15698 -9.91938 -9.36151 -8.91106 -8.64259 -8.24779 -7.71032 -5.92832 -3.97970 2.09666 2.47383 3.34339 3.41028 3.44814 4.36293 4.49035 4.50254 4.60627 4.68068 4.89667 4.95035 5.03564 5.22661 5.37108 5.39380 5.43499 5.47343 5.54462 5.63115 5.74239 5.79125 5.93908 6.11368 6.19387 6.25403 6.28665 6.36726 6.39433 6.67892 6.70244 6.90574 7.13270 7.22182 7.49767 7.62778 7.67066 7.75179 7.88414 8.10408 8.21415 8.53395 9.05757 9.66215 11.13412 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036450 B = 0.003019 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.001094 B = 9271.671684 C = 9784.854067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.460 3.540 5 O -0.503 6.503 6 C -0.111 4.111 7 C -0.107 4.107 8 C 0.056 3.944 9 N -0.536 5.536 10 C 0.054 3.946 11 C -0.104 4.104 12 C 0.047 3.953 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.107 4.107 22 C 0.061 3.939 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.020 0.980 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.220 -2.478 -5.018 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.390 6.390 6 C -0.149 4.149 7 C -0.145 4.145 8 C -0.072 4.072 9 N -0.261 5.261 10 C -0.073 4.073 11 C -0.143 4.143 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.145 4.145 22 C -0.066 4.066 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -20.825 -3.183 -5.223 21.705 hybrid contribution 0.721 0.172 0.679 1.005 sum -20.104 -3.010 -4.544 20.830 Atomic orbital electron populations 1.21804 0.92687 1.02942 1.03481 1.23009 0.95290 0.80400 1.02677 1.86505 1.24983 1.32307 1.84287 1.23906 0.80303 0.93195 0.72320 1.90702 1.60290 1.43268 1.44715 1.21413 0.97360 0.90431 1.05672 1.21464 0.90313 0.98009 1.04738 1.22017 0.89521 0.95535 1.00159 1.61954 1.03971 1.23495 1.36683 1.22338 0.99297 0.97449 0.88200 1.21660 0.89184 1.00395 1.03035 1.18688 0.94276 0.92608 0.91560 1.21215 0.92594 1.40705 1.00242 0.92765 1.24974 0.98198 0.95578 0.95335 1.69880 1.35311 1.43299 1.04687 0.86635 0.85960 0.77584 0.78050 1.20839 1.21310 1.19959 1.21682 0.91483 1.00004 1.01290 1.22106 0.97319 0.88569 0.98632 0.91498 0.90282 0.91491 0.91241 0.91229 0.87678 0.87815 0.90687 0.90147 0.91283 0.95379 0.96055 0.92285 0.93807 0.89012 0.96226 0.93137 0.92472 0.93220 0.92483 0.95875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.50 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.36 -3.85 10.22 -39.26 -0.40 -4.25 16 4 C 0.46 5.53 7.96 36.01 0.29 5.81 16 5 O -0.50 -7.76 15.73 -18.75 -0.29 -8.06 16 6 C -0.11 -1.08 5.81 -27.88 -0.16 -1.24 16 7 C -0.11 -1.39 4.43 -26.74 -0.12 -1.51 16 8 C 0.06 0.77 4.96 -3.83 -0.02 0.75 16 9 N -0.54 -9.64 4.66 -234.67 -1.09 -10.73 16 10 C 0.05 1.09 5.29 -3.83 -0.02 1.07 16 11 C -0.10 -2.53 5.12 -26.65 -0.14 -2.67 16 12 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 13 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 14 H 0.05 1.50 7.75 -52.48 -0.41 1.09 16 15 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -25.84 11.37 55.43 0.63 -25.21 16 17 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 22 C 0.06 1.11 5.46 -3.83 -0.02 1.09 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 27 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.10 6.39 -51.93 -0.33 0.77 16 31 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.07 0.83 7.99 -51.93 -0.41 0.41 16 33 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.12 6.21 -51.93 -0.32 0.79 16 36 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -31.01 342.59 -9.01 -40.02 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -7.68 Total: -2.75 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -0.31 Total: -10.80 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.46 Total: -35.94 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.70 Total: -12.31 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.01 -9.01 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541953838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.653 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds