Wall clock time and date at job start Mon Mar 30 2020 01:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 4 9 9 N 1.46901 * 109.47859 * 179.97438 * 8 7 6 10 10 C 1.46848 * 110.99510 * 294.21467 * 9 8 7 11 11 C 1.53048 * 109.52064 * 174.15537 * 10 9 8 12 12 C 1.53118 * 109.27745 * 59.17773 * 11 10 9 13 13 C 1.50696 * 109.57248 * 182.40887 * 12 11 10 14 14 H 1.08009 * 119.99700 * 119.71572 * 13 12 11 15 15 C 1.37871 * 120.00268 * 299.71086 * 13 12 11 16 16 N 1.31514 * 119.99941 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46917 * 90.00128 * 17 15 13 19 19 H 1.48501 * 109.46990 * 210.00449 * 17 15 13 20 20 H 1.48497 * 109.46956 * 330.00412 * 17 15 13 21 21 C 1.53120 * 109.16026 * 302.34502 * 12 11 10 22 22 C 1.46844 * 111.00526 * 170.00090 * 9 8 7 23 23 H 1.08998 * 109.47698 * 59.99951 * 1 2 3 24 24 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47066 * 299.99718 * 1 2 3 26 26 H 1.09001 * 109.46829 * 239.99566 * 2 1 3 27 27 H 1.08998 * 109.47230 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47060 * 299.99765 * 6 4 3 29 29 H 1.09001 * 109.47380 * 59.99853 * 6 4 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 7 6 4 31 31 H 1.08998 * 109.47533 * 59.99628 * 7 6 4 32 32 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 33 33 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 34 34 H 1.08996 * 109.46339 * 294.16557 * 10 9 8 35 35 H 1.08994 * 109.46869 * 54.14232 * 10 9 8 36 36 H 1.08998 * 109.49998 * 299.23732 * 11 10 9 37 37 H 1.08994 * 109.50211 * 179.11499 * 11 10 9 38 38 H 1.09002 * 109.52451 * 62.24612 * 12 11 10 39 39 H 0.96999 * 119.99675 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.50479 * 297.71302 * 21 12 11 41 41 H 1.08998 * 109.50625 * 177.59615 * 21 12 11 42 42 H 1.09003 * 109.46077 * 305.85847 * 22 9 8 43 43 H 1.08995 * 109.45945 * 65.83669 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 6 6.0334 4.2710 -0.0002 9 7 7.5004 4.1943 0.0003 10 6 7.9961 3.6055 1.2509 11 6 9.5108 3.4071 1.1577 12 6 10.1832 4.7596 0.9068 13 6 11.6697 4.5639 0.7550 14 1 12.1608 4.8487 -0.1639 15 6 12.4028 4.0215 1.7890 16 7 11.8047 3.6745 2.9077 17 14 14.2456 3.7796 1.6011 18 1 14.9548 4.9981 2.0674 19 1 14.6772 2.6140 2.4137 20 1 14.5694 3.5345 0.1728 21 6 9.6143 5.3735 -0.3754 22 6 8.0967 5.5149 -0.2378 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.5844 3.4700 -0.8895 29 1 3.5852 3.4690 0.8905 30 1 5.7846 2.3248 0.8896 31 1 5.7845 2.3255 -0.8903 32 1 5.6974 4.8032 -0.8902 33 1 5.6976 4.8032 0.8898 34 1 7.7677 4.2727 2.0820 35 1 7.5132 2.6423 1.4154 36 1 9.7390 2.7290 0.3354 37 1 9.8806 2.9847 2.0919 38 1 9.9874 5.4254 1.7473 39 1 12.3206 3.2932 3.6353 40 1 9.8443 4.7264 -1.2219 41 1 10.0581 6.3559 -0.5366 42 1 7.6867 5.9385 -1.1547 43 1 7.8679 6.1730 0.6003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541953838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:19 Heat of formation + Delta-G solvation = -126.984945 kcal Electronic energy + Delta-G solvation = -20586.945816 eV Core-core repulsion = 17437.424177 eV Total energy + Delta-G solvation = -3149.521639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52438 -39.87373 -37.84261 -36.32131 -34.54889 -32.89727 -32.28008 -31.45160 -28.68551 -26.79554 -24.48702 -23.88165 -23.41307 -22.21418 -21.32899 -20.33924 -18.70714 -18.43452 -17.83443 -17.43501 -16.70777 -16.31923 -16.15850 -15.56348 -15.10665 -14.89775 -14.52011 -14.45950 -14.21609 -14.10421 -13.69321 -13.25322 -13.15808 -12.89870 -12.85259 -12.71283 -12.57182 -12.51360 -12.39456 -12.13876 -11.95659 -11.84506 -11.71319 -11.52474 -11.50968 -11.25917 -10.78303 -10.61035 -10.37004 -9.13272 -8.07854 -6.21222 1.18885 1.40157 1.41270 1.51598 1.69106 2.43682 3.07835 3.19000 3.68869 3.95970 3.99611 4.05445 4.09131 4.24315 4.32461 4.34580 4.39706 4.43827 4.57952 4.62936 4.66607 4.76492 4.81623 4.88808 4.92195 4.92488 4.99588 5.07525 5.15500 5.21121 5.25041 5.34094 5.38439 5.49644 5.58301 5.63662 6.01481 6.04588 6.32142 6.40716 6.41863 6.74227 6.90917 7.46480 8.96755 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036450 B = 0.003019 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.001094 B = 9271.671684 C = 9784.854067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.361 6.361 4 C 0.460 3.540 5 O -0.547 6.547 6 C -0.101 4.101 7 C -0.101 4.101 8 C 0.058 3.942 9 N -0.548 5.548 10 C 0.068 3.932 11 C -0.097 4.097 12 C 0.043 3.957 13 C -0.533 4.533 14 H 0.051 0.949 15 C 0.009 3.991 16 N -0.919 5.919 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.101 4.101 22 C 0.067 3.933 23 H 0.071 0.929 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.041 0.959 34 H 0.016 0.984 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.058 0.942 38 H -0.011 1.011 39 H 0.260 0.740 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.093 0.907 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.002 -1.559 -6.126 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.278 6.278 4 C 0.305 3.695 5 O -0.437 6.437 6 C -0.139 4.139 7 C -0.140 4.140 8 C -0.069 4.069 9 N -0.273 5.273 10 C -0.059 4.059 11 C -0.135 4.135 12 C 0.024 3.976 13 C -0.571 4.571 14 H 0.069 0.931 15 C -0.189 4.189 16 N -0.559 5.559 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.139 4.139 22 C -0.060 4.060 23 H 0.090 0.910 24 H 0.116 0.884 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.007 0.993 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -22.640 -2.246 -6.342 23.618 hybrid contribution 1.240 -0.138 1.021 1.612 sum -21.400 -2.385 -5.321 22.180 Atomic orbital electron populations 1.21814 0.90229 1.04310 1.03840 1.23260 0.97217 0.79529 1.02270 1.86508 1.24154 1.33396 1.83751 1.24385 0.80472 0.93624 0.71006 1.90692 1.61251 1.44810 1.46931 1.21408 0.94692 0.89456 1.08319 1.21329 0.92770 0.97137 1.02720 1.22125 0.86358 0.96264 1.02160 1.61882 1.06924 1.23534 1.34983 1.22038 0.96286 0.98191 0.89423 1.21427 0.92400 0.99238 1.00441 1.18670 0.93631 0.92708 0.92541 1.21610 0.94330 1.40890 1.00244 0.93060 1.25772 1.02697 0.95323 0.95073 1.70024 1.36847 1.43726 1.05280 0.85623 0.80602 0.77670 0.78168 1.20020 1.20970 1.19373 1.21558 0.94270 0.99609 0.98491 1.22048 0.94825 0.88741 1.00404 0.91008 0.88441 0.91185 0.91601 0.91843 0.84511 0.85390 0.93124 0.91907 0.88282 0.94092 0.96597 0.91421 0.95484 0.92336 0.99328 0.93138 0.93244 0.92654 0.88859 0.95803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.83 6.19 71.98 0.45 1.28 16 3 O -0.36 -7.07 10.22 -51.41 -0.53 -7.60 16 4 C 0.46 10.46 7.96 71.24 0.57 11.02 16 5 O -0.55 -16.95 15.73 21.97 0.35 -16.60 16 6 C -0.10 -1.67 5.81 29.85 0.17 -1.50 16 7 C -0.10 -2.45 4.43 30.59 0.14 -2.32 16 8 C 0.06 1.42 4.96 86.30 0.43 1.84 16 9 N -0.55 -18.79 4.66 -896.37 -4.17 -22.96 16 10 C 0.07 2.76 5.29 86.33 0.46 3.22 16 11 C -0.10 -4.85 5.12 30.65 0.16 -4.70 16 12 C 0.04 2.24 2.16 -11.46 -0.02 2.22 16 13 C -0.53 -30.46 8.56 25.60 0.22 -30.24 16 14 H 0.05 2.88 7.75 -2.91 -0.02 2.86 16 15 C 0.01 0.54 5.31 84.65 0.45 0.99 16 16 N -0.92 -54.77 11.37 21.45 0.24 -54.53 16 17 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.10 -4.29 5.32 30.65 0.16 -4.12 16 22 C 0.07 2.29 5.46 86.33 0.47 2.76 16 23 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 27 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 28 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.46 6.39 -2.39 -0.02 1.45 16 31 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 32 H 0.10 1.88 7.99 -2.39 -0.02 1.86 16 33 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 2.60 6.21 -2.39 -0.01 2.58 16 36 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 3.30 6.17 -2.39 -0.01 3.29 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 40 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.09 2.54 8.02 -2.39 -0.02 2.52 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -69.51 342.59 3.25 -66.26 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.95 Total: 8.64 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 4.38 Total: -20.20 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -3.93 Total: -77.49 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.18 Total: -24.20 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -69.51 3.25 -66.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541953838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.725 kcal (2) G-P(sol) polarization free energy of solvation -69.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds