Wall clock time and date at job start Mon Mar 30 2020 01:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47210 * 2 1 4 4 C 1.42897 * 114.00112 * 180.02562 * 3 2 1 5 5 C 1.53784 * 113.61302 * 210.00231 * 4 3 2 6 6 C 1.53786 * 87.08081 * 220.02161 * 5 4 3 7 7 C 1.50695 * 113.61269 * 139.98220 * 6 5 4 8 8 O 1.21274 * 120.00413 * 1.79946 * 7 6 5 9 9 N 1.34784 * 119.99635 * 181.52904 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47219 * 89.99688 * 10 9 7 12 12 H 1.07996 * 119.99587 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00012 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00204 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99711 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47162 * 90.00216 * 15 13 11 17 17 H 1.48504 * 109.46778 * 209.99667 * 15 13 11 18 18 H 1.48495 * 109.47398 * 329.99635 * 15 13 11 19 19 C 1.46499 * 119.99893 * 0.02562 * 9 7 6 20 20 C 1.52993 * 109.47238 * 120.00062 * 19 9 7 21 21 C 1.53001 * 109.46682 * 239.99962 * 19 9 7 22 22 C 1.53782 * 87.17120 * 25.39020 * 6 5 4 23 23 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47401 * 299.99104 * 1 2 3 25 25 H 1.09004 * 109.47604 * 60.00144 * 1 2 3 26 26 H 1.09006 * 109.47396 * 240.00448 * 2 1 3 27 27 H 1.08997 * 109.47325 * 120.00082 * 2 1 3 28 28 H 1.09000 * 112.90745 * 341.25315 * 4 3 2 29 29 H 1.08991 * 113.61760 * 105.47157 * 5 4 3 30 30 H 1.08997 * 113.61484 * 334.56732 * 5 4 3 31 31 H 1.08994 * 113.61418 * 270.80062 * 6 5 4 32 32 H 1.08998 * 109.47416 * 209.99869 * 10 9 7 33 33 H 1.09008 * 109.47058 * 330.00468 * 10 9 7 34 34 H 0.97000 * 120.00290 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.47156 * 359.97438 * 19 9 7 36 36 H 1.09008 * 109.47425 * 59.99760 * 20 19 9 37 37 H 1.08998 * 109.47413 * 179.97438 * 20 19 9 38 38 H 1.09005 * 109.47396 * 300.00115 * 20 19 9 39 39 H 1.08998 * 109.47077 * 60.00283 * 21 19 9 40 40 H 1.08998 * 109.46818 * 180.02562 * 21 19 9 41 41 H 1.09001 * 109.46881 * 300.00050 * 21 19 9 42 42 H 1.09000 * 113.61491 * 89.16239 * 22 6 5 43 43 H 1.09003 * 113.61159 * 220.06267 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9488 2.7251 0.7040 6 6 4.9895 2.8316 -0.4232 7 6 5.2269 4.2432 -0.8943 8 8 4.6434 5.1653 -0.3651 9 7 6.0919 4.4815 -1.9001 10 6 6.3223 5.8537 -2.3584 11 6 7.4574 6.4611 -1.5749 12 1 7.9568 5.8829 -0.8116 13 6 7.8575 7.7553 -1.8318 14 7 7.2483 8.4599 -2.7603 15 14 9.2649 8.5079 -0.8611 16 1 10.5477 8.2366 -1.5581 17 1 9.0617 9.9749 -0.7515 18 1 9.3039 7.9107 0.4979 19 6 6.8008 3.3681 -2.5357 20 6 6.4519 3.3249 -4.0247 21 6 8.3093 3.5635 -2.3708 22 6 4.0037 2.0458 -1.3040 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.9289 0.5458 0.3218 29 1 4.3848 2.5316 1.6839 30 1 3.2303 3.5447 0.7137 31 1 5.9143 2.2934 -0.2159 32 1 6.5763 5.8450 -3.4184 33 1 5.4188 6.4442 -2.2060 34 1 7.5300 9.3702 -2.9413 35 1 6.5025 2.4314 -2.0650 36 1 6.7505 4.2618 -4.4952 37 1 6.9797 2.4968 -4.4978 38 1 5.3772 3.1858 -4.1422 39 1 8.5579 3.5942 -1.3100 40 1 8.8368 2.7354 -2.8441 41 1 8.6079 4.5003 -2.8413 42 1 3.3003 2.6793 -1.8443 43 1 4.4841 1.3045 -1.9427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573354105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:37 Heat of formation + Delta-G solvation = -71.187783 kcal Electronic energy + Delta-G solvation = -21558.679667 eV Core-core repulsion = 18411.577575 eV Total energy + Delta-G solvation = -3147.102092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11342 -38.28810 -36.22464 -35.57957 -32.76864 -31.11767 -30.76086 -27.86731 -26.72490 -25.59869 -25.29559 -22.99960 -22.58801 -21.28163 -19.81373 -18.08809 -17.25403 -16.40305 -16.09262 -15.77319 -15.50850 -14.98377 -14.39397 -13.93428 -13.85351 -13.44123 -13.10914 -12.94280 -12.74460 -12.41668 -12.30021 -12.17364 -11.77692 -11.60883 -11.55123 -11.46336 -11.15079 -10.98023 -10.93338 -10.79948 -10.69570 -10.56407 -10.45644 -10.32063 -9.96059 -9.49687 -9.45317 -8.74450 -8.38152 -7.57833 -5.99325 -4.02453 3.31945 3.38880 3.41569 3.47542 3.58842 4.06119 4.48222 4.56306 4.68273 4.83304 4.86673 4.95157 5.06450 5.18750 5.19988 5.29494 5.34753 5.48583 5.52086 5.61746 5.71022 5.71801 5.74787 5.88937 5.93207 6.03256 6.08419 6.18887 6.19765 6.30732 6.39478 6.42595 6.63780 6.98743 7.17896 7.25759 7.52874 7.64457 7.98040 8.30617 8.53213 8.96999 9.19182 9.61644 11.08799 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.004378 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.037661 B = 6394.152949 C = 6787.025425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.062 3.938 5 C -0.112 4.112 6 C -0.137 4.137 7 C 0.517 3.483 8 O -0.540 6.540 9 N -0.591 5.591 10 C 0.245 3.755 11 C -0.517 4.517 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.134 3.866 20 C -0.161 4.161 21 C -0.158 4.158 22 C -0.135 4.135 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.692 -19.020 1.567 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.004 3.996 5 C -0.150 4.150 6 C -0.159 4.159 7 C 0.303 3.697 8 O -0.417 6.417 9 N -0.322 5.322 10 C 0.126 3.874 11 C -0.556 4.556 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.200 1.200 19 C 0.030 3.970 20 C -0.220 4.220 21 C -0.216 4.216 22 C -0.173 4.173 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.119 -18.164 1.740 19.246 hybrid contribution 1.168 0.236 0.421 1.264 sum -4.951 -17.928 2.161 18.724 Atomic orbital electron populations 1.21748 0.93988 1.01973 1.03236 1.22486 0.95537 0.84403 0.99753 1.88008 1.20788 1.25767 1.94542 1.23744 0.80868 0.98006 0.96951 1.23080 0.97341 0.97600 0.96940 1.22486 0.98694 0.95837 0.98847 1.19980 0.79789 0.89580 0.80342 1.90659 1.49611 1.45572 1.55890 1.48290 1.40604 1.09269 1.34070 1.19226 0.97443 0.75796 0.94899 1.21448 1.16274 0.98153 1.19762 0.92417 1.24930 0.97027 0.96866 0.95402 1.69933 1.41254 1.10267 1.32071 0.86550 0.82222 0.78472 0.80497 1.20742 1.21187 1.19955 1.20972 0.93087 0.89677 0.93289 1.22156 1.01119 1.02510 0.96168 1.22151 0.94632 1.02638 1.02142 1.23446 0.97830 0.99195 0.96875 0.91364 0.91858 0.91817 0.93537 0.93589 0.89568 0.90870 0.87745 0.87443 0.94874 0.94163 0.92843 0.90726 0.91367 0.92409 0.92916 0.92804 0.93368 0.90091 0.88820 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.15 0.38 -0.87 16 2 C 0.05 0.52 6.50 37.15 0.24 0.76 16 3 O -0.37 -4.87 10.36 -35.23 -0.36 -5.23 16 4 C 0.06 0.75 4.31 -25.83 -0.11 0.64 16 5 C -0.11 -1.63 7.23 -25.91 -0.19 -1.82 16 6 C -0.14 -2.09 2.70 -90.96 -0.25 -2.34 16 7 C 0.52 10.96 7.20 -10.98 -0.08 10.88 16 8 O -0.54 -13.99 15.49 5.56 0.09 -13.90 16 9 N -0.59 -12.51 2.39 -167.47 -0.40 -12.91 16 10 C 0.25 6.41 4.59 -5.19 -0.02 6.38 16 11 C -0.52 -14.53 7.83 -34.44 -0.27 -14.80 16 12 H 0.06 1.62 7.63 -52.49 -0.40 1.22 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 15 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.13 2.20 3.13 -67.93 -0.21 1.99 16 20 C -0.16 -2.39 9.17 37.15 0.34 -2.05 16 21 C -0.16 -2.61 8.48 37.16 0.32 -2.29 16 22 C -0.14 -1.76 7.05 -25.83 -0.18 -1.94 16 23 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.82 7.46 -51.93 -0.39 1.43 16 31 H 0.11 1.41 7.38 -51.93 -0.38 1.02 16 32 H 0.03 0.87 6.42 -51.93 -0.33 0.54 16 33 H 0.04 1.21 7.43 -51.92 -0.39 0.82 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.02 5.31 -51.93 -0.28 0.74 16 36 H 0.07 1.16 6.66 -51.92 -0.35 0.81 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.59 6.93 -51.93 -0.36 1.23 16 42 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 43 H 0.07 0.78 7.99 -51.93 -0.42 0.36 16 LS Contribution 345.22 15.07 5.20 5.20 Total: -1.00 -32.97 345.22 -7.37 -40.34 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.48 Total: -0.62 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.13 Total: -3.86 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.34 Total: -38.91 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.28 Total: -19.13 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.97 -7.37 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573354105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.847 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds