Wall clock time and date at job start Mon Mar 30 2020 01:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47581 * 180.02562 * 6 4 3 8 8 N 1.46893 * 109.47489 * 179.97438 * 7 6 4 9 9 C 1.46852 * 110.99898 * 294.20631 * 8 7 6 10 10 C 1.53036 * 109.52345 * 174.16050 * 9 8 7 11 11 C 1.53119 * 109.27986 * 59.18001 * 10 9 8 12 12 C 1.52999 * 109.57654 * 182.40828 * 11 10 9 13 13 C 1.50702 * 109.46983 * 294.71547 * 12 11 10 14 14 H 1.08000 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00117 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00064 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00461 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47274 * 89.99117 * 17 15 13 19 19 H 1.48498 * 109.47580 * 209.99815 * 17 15 13 20 20 H 1.48503 * 109.46707 * 329.99739 * 17 15 13 21 21 C 1.53117 * 109.16153 * 302.34591 * 11 10 9 22 22 C 1.46846 * 111.00257 * 169.99703 * 8 7 6 23 23 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 28 28 H 1.09009 * 109.46972 * 299.99362 * 6 4 3 29 29 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 30 30 H 1.09005 * 109.46903 * 300.00018 * 7 6 4 31 31 H 1.09000 * 109.47608 * 59.99121 * 7 6 4 32 32 H 1.09001 * 109.45851 * 294.17692 * 9 8 7 33 33 H 1.08996 * 109.46022 * 54.14342 * 9 8 7 34 34 H 1.08999 * 109.50602 * 299.23451 * 10 9 8 35 35 H 1.09000 * 109.50301 * 179.11838 * 10 9 8 36 36 H 1.09008 * 109.52386 * 62.24714 * 11 10 9 37 37 H 1.08992 * 109.47116 * 54.71246 * 12 11 10 38 38 H 1.08995 * 109.46953 * 174.71312 * 12 11 10 39 39 H 0.96997 * 120.00512 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.50238 * 297.71492 * 21 11 10 41 41 H 1.08996 * 109.50589 * 177.59705 * 21 11 10 42 42 H 1.08999 * 109.46170 * 305.85391 * 22 8 7 43 43 H 1.08999 * 109.46274 * 65.83222 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 5.4484 2.8576 0.0010 8 7 6.0098 4.2150 0.0010 9 6 5.6914 4.9162 -1.2494 10 6 6.1637 6.3689 -1.1557 11 6 7.6739 6.3943 -0.9048 12 6 8.1436 7.8422 -0.7503 13 6 7.9509 8.5746 -2.0531 14 1 7.5354 8.0588 -2.9062 15 6 8.3059 9.9028 -2.1564 16 7 8.8123 10.5308 -1.1178 17 14 8.0664 10.8109 -3.7711 18 1 6.7153 11.4269 -3.7970 19 1 9.0969 11.8724 -3.8998 20 1 8.1963 9.8553 -4.9004 21 6 7.9836 5.6163 0.3771 22 6 7.4586 4.1854 0.2390 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.5850 3.4699 -0.8889 29 1 3.5843 3.4695 0.8911 30 1 5.7845 2.3251 0.8908 31 1 5.7845 2.3258 -0.8891 32 1 6.1955 4.4233 -2.0806 33 1 4.6141 4.8944 -1.4137 34 1 5.6497 6.8664 -0.3333 35 1 5.9412 6.8848 -2.0898 36 1 8.1908 5.9315 -1.7456 37 1 7.5620 8.3314 0.0310 38 1 9.1992 7.8547 -0.4791 39 1 9.0618 11.4653 -1.1902 40 1 7.4983 6.1019 1.2237 41 1 9.0614 5.5945 0.5382 42 1 7.6648 3.6329 1.1557 43 1 7.9544 3.6961 -0.5993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574914338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:40 Heat of formation + Delta-G solvation = -111.845278 kcal Electronic energy + Delta-G solvation = -20552.143446 eV Core-core repulsion = 17403.278313 eV Total energy + Delta-G solvation = -3148.865133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71128 -38.80772 -36.94921 -34.89976 -32.71154 -32.09649 -30.85927 -30.24907 -27.65052 -24.88235 -23.58506 -22.88403 -22.32688 -20.88319 -20.32957 -18.92535 -17.98451 -17.01852 -16.60263 -16.19305 -15.31292 -15.16490 -14.52274 -14.43075 -14.12196 -13.65570 -13.45879 -13.25484 -13.08802 -13.06963 -12.30149 -12.22491 -12.12723 -11.90576 -11.81606 -11.48779 -11.32605 -11.04078 -10.84007 -10.78019 -10.67784 -10.60298 -10.55853 -10.25043 -9.92676 -9.51185 -9.03205 -8.85646 -8.30992 -8.14191 -5.95631 -3.97064 2.00858 2.38785 3.33505 3.40038 3.42865 4.05084 4.48852 4.52108 4.56469 4.63153 4.76911 4.90295 4.91781 5.28919 5.30545 5.39158 5.40205 5.41822 5.45548 5.53808 5.60906 5.68899 5.76431 5.83352 5.89393 5.99475 6.14080 6.21363 6.25717 6.45978 6.58611 6.68418 6.99419 7.11317 7.21224 7.28683 7.36035 7.54586 7.72888 7.89523 8.05368 8.48375 9.09615 9.66328 11.15695 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032690 B = 0.003030 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.322413 B = 9237.895286 C = 9830.909491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.512 6.512 6 C -0.112 4.112 7 C 0.067 3.933 8 N -0.537 5.537 9 C 0.050 3.950 10 C -0.099 4.099 11 C -0.082 4.082 12 C 0.028 3.972 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.112 4.112 22 C 0.061 3.939 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.361 -18.896 3.129 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.400 6.400 6 C -0.150 4.150 7 C -0.061 4.061 8 N -0.262 5.262 9 C -0.078 4.078 10 C -0.137 4.137 11 C -0.101 4.101 12 C -0.009 4.009 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.150 4.150 22 C -0.066 4.066 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.303 -18.783 3.564 23.291 hybrid contribution 0.281 -0.038 -1.555 1.581 sum -13.021 -18.822 2.009 22.975 Atomic orbital electron populations 1.21811 0.92585 1.02952 1.03651 1.23021 0.95412 0.80296 1.02569 1.86524 1.24750 1.32338 1.84050 1.23850 0.80421 0.92955 0.71936 1.90669 1.60382 1.43440 1.45493 1.21423 0.96630 0.90196 1.06758 1.21806 0.91595 0.90597 1.02115 1.61903 1.13493 1.14818 1.35986 1.22315 0.99821 0.96486 0.89150 1.21546 0.96781 0.92763 1.02629 1.21245 0.94817 0.98953 0.95079 1.19113 0.96189 0.88652 0.96948 1.21255 1.41180 0.95339 0.97438 0.92731 1.25020 0.95459 0.97812 0.96244 1.69964 1.43392 1.10694 1.29528 0.86655 0.77799 0.79608 0.84289 1.20723 1.21335 1.19987 1.21698 0.99781 0.93496 0.99988 1.22096 0.86225 0.98603 0.99716 0.91401 0.90271 0.91392 0.91281 0.91245 0.87420 0.86600 0.90133 0.94213 0.95290 0.91442 0.91758 0.90868 0.93059 0.96490 0.96766 0.93110 0.91522 0.92055 0.91492 0.95229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.72 10.22 -39.24 -0.40 -4.13 16 4 C 0.47 5.32 7.96 36.00 0.29 5.60 16 5 O -0.51 -7.15 15.73 -18.76 -0.30 -7.45 16 6 C -0.11 -1.15 5.74 -27.89 -0.16 -1.31 16 7 C 0.07 0.82 4.25 -3.83 -0.02 0.80 16 8 N -0.54 -7.60 4.66 -234.67 -1.09 -8.69 16 9 C 0.05 0.74 5.29 -3.83 -0.02 0.72 16 10 C -0.10 -1.82 5.15 -26.65 -0.14 -1.96 16 11 C -0.08 -1.66 2.20 -90.50 -0.20 -1.86 16 12 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 13 C -0.51 -14.28 8.45 -34.44 -0.29 -14.57 16 14 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 C -0.11 -1.93 5.38 -26.65 -0.14 -2.07 16 22 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.11 1.01 6.43 -51.92 -0.33 0.68 16 29 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 31 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.86 6.21 -51.93 -0.32 0.54 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.43 7.06 -51.93 -0.37 1.06 16 36 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.88 8.02 -51.93 -0.42 0.46 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -31.23 344.12 -8.89 -40.12 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -7.70 Total: -3.98 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.31 Total: -11.45 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.36 Total: -34.91 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.70 Total: -11.57 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.23 -8.89 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574914338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.725 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds