Wall clock time and date at job start Mon Mar 30 2020 00:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46864 * 2 1 4 4 C 1.53007 * 109.47296 * 119.99756 * 2 1 3 5 5 O 1.42896 * 109.46759 * 64.99907 * 4 2 1 6 6 C 1.42901 * 113.99679 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.47336 * 330.00303 * 6 5 4 8 8 C 1.53001 * 109.47139 * 90.00343 * 6 5 4 9 9 C 1.50699 * 109.47212 * 210.00201 * 6 5 4 10 10 O 1.21285 * 119.99790 * 353.48999 * 9 6 5 11 11 N 1.34778 * 120.00395 * 173.48924 * 9 6 5 12 12 C 1.46499 * 120.00109 * 184.99470 * 11 9 6 13 13 C 1.53005 * 109.46831 * 175.32271 * 12 11 9 14 14 C 1.50706 * 115.54803 * 64.06019 * 13 12 11 15 15 H 1.07998 * 120.00036 * 267.03446 * 14 13 12 16 16 C 1.37872 * 119.99988 * 87.03481 * 14 13 12 17 17 N 1.31512 * 120.00194 * 178.91344 * 16 14 13 18 18 Si 1.86805 * 120.00123 * 358.91075 * 16 14 13 19 19 H 1.48493 * 109.47138 * 91.49975 * 18 16 14 20 20 H 1.48506 * 109.46780 * 211.49793 * 18 16 14 21 21 H 1.48492 * 109.47008 * 331.49524 * 18 16 14 22 22 C 1.52992 * 117.50171 * 278.38913 * 13 12 11 23 23 C 1.52995 * 117.49793 * 209.72533 * 13 12 11 24 24 H 1.08997 * 109.46592 * 60.00584 * 1 2 3 25 25 H 1.09003 * 109.46777 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47208 * 299.99690 * 1 2 3 27 27 H 1.08994 * 109.47597 * 239.99982 * 2 1 3 28 28 H 1.09007 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47291 * 299.99883 * 3 2 1 30 30 H 1.09004 * 109.47317 * 60.00076 * 3 2 1 31 31 H 1.09005 * 109.46476 * 305.00674 * 4 2 1 32 32 H 1.08994 * 109.46943 * 185.00716 * 4 2 1 33 33 H 1.08996 * 109.47259 * 175.31510 * 8 6 5 34 34 H 1.09001 * 109.47013 * 295.31582 * 8 6 5 35 35 H 1.09001 * 109.47066 * 55.31958 * 8 6 5 36 36 H 0.97000 * 119.99931 * 4.99654 * 11 9 6 37 37 H 1.08994 * 109.47163 * 295.32366 * 12 11 9 38 38 H 1.09000 * 109.46816 * 55.32592 * 12 11 9 39 39 H 0.96999 * 120.00536 * 180.02562 * 17 16 14 40 40 H 1.09004 * 117.49668 * 359.97438 * 22 13 12 41 41 H 1.08997 * 117.50012 * 145.02510 * 22 13 12 42 42 H 1.08996 * 117.50024 * 214.98368 * 23 13 12 43 43 H 1.09001 * 117.50043 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0914 -2.8659 2.3181 7 1 3.0165 -2.4459 2.7129 8 6 1.0118 -2.8299 3.4017 9 6 2.3286 -4.2920 1.8927 10 8 2.0362 -4.6466 0.7703 11 7 2.8658 -5.1734 2.7594 12 6 3.1977 -6.5291 2.3141 13 6 3.8947 -7.2823 3.4491 14 6 3.0593 -7.5195 4.6808 15 1 3.0929 -6.8162 5.4997 16 6 2.2523 -8.6343 4.7622 17 7 1.5396 -8.8525 5.8458 18 14 2.1709 -9.8349 3.3334 19 1 3.1864 -10.9014 3.5246 20 1 0.8179 -10.4443 3.2754 21 1 2.4436 -9.1134 2.0645 22 6 5.3912 -7.0337 3.6475 23 6 4.9066 -8.3628 3.0629 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 1.3018 -3.4820 4.2254 34 1 0.8990 -1.8096 3.7683 35 1 0.0654 -3.1723 2.9831 36 1 3.0325 -4.9102 3.6780 37 1 2.2839 -7.0544 2.0368 38 1 3.8622 -6.4757 1.4517 39 1 0.9721 -9.6370 5.9032 40 1 5.8794 -6.3339 2.9692 41 1 5.7717 -7.0422 4.6689 42 1 4.9685 -9.2451 3.6999 43 1 5.0756 -8.5375 2.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578839977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:05 Heat of formation + Delta-G solvation = -77.393158 kcal Electronic energy + Delta-G solvation = -21066.438116 eV Core-core repulsion = 17919.066939 eV Total energy + Delta-G solvation = -3147.371177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.61535 -38.04971 -36.95778 -35.16618 -33.52569 -32.16132 -31.10525 -27.31037 -26.83065 -26.28587 -25.33280 -23.36922 -21.74594 -20.51139 -19.77057 -19.19575 -17.10943 -17.00091 -16.19160 -15.80290 -15.13583 -14.99414 -14.75304 -14.43245 -14.00725 -13.74006 -13.31031 -13.02201 -12.78795 -12.66025 -12.46825 -12.40460 -12.23019 -12.21238 -11.96493 -11.34723 -11.22020 -11.17827 -11.01006 -10.79643 -10.68605 -10.54101 -10.19207 -9.81682 -9.68447 -9.21692 -9.15813 -8.69056 -8.58700 -8.29639 -6.18696 -4.23818 3.06706 3.17315 3.27541 3.38095 3.43999 4.07193 4.38115 4.67889 4.72247 4.83670 4.95050 4.97616 5.08996 5.14185 5.22660 5.27858 5.32549 5.42972 5.54484 5.65146 5.68224 5.71767 5.76634 5.78693 5.89685 5.99678 6.04828 6.13450 6.20616 6.23127 6.23890 6.40123 6.49489 6.68504 6.96769 7.03284 7.06848 7.20239 7.65077 8.14886 8.37527 8.75254 8.80625 9.44598 10.92429 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029971 B = 0.003978 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.002851 B = 7037.455252 C = 7245.745732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.145 4.145 4 C 0.063 3.937 5 O -0.355 6.355 6 C 0.073 3.927 7 H 0.082 0.918 8 C -0.171 4.171 9 C 0.507 3.493 10 O -0.537 6.537 11 N -0.701 5.701 12 C 0.157 3.843 13 C -0.016 4.016 14 C -0.492 4.492 15 H 0.078 0.922 16 C 0.081 3.919 17 N -0.895 5.895 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.256 1.256 22 C -0.178 4.178 23 C -0.193 4.193 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.404 0.596 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.266 0.734 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 16.474 -6.652 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.014 4.014 5 O -0.273 6.273 6 C 0.011 3.989 7 H 0.100 0.900 8 C -0.229 4.229 9 C 0.291 3.709 10 O -0.414 6.414 11 N -0.352 5.352 12 C 0.034 3.966 13 C -0.017 4.017 14 C -0.529 4.529 15 H 0.096 0.904 16 C -0.122 4.122 17 N -0.531 5.531 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.180 1.180 22 C -0.215 4.215 23 C -0.231 4.231 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.239 0.761 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.662 16.008 -7.531 17.769 hybrid contribution 0.135 -0.594 0.073 0.613 sum 1.797 15.415 -7.458 17.218 Atomic orbital electron populations 1.21784 0.94527 1.02724 1.01138 1.21083 0.96878 0.95373 0.98050 1.21787 1.01027 0.95323 1.02110 1.22673 0.98287 0.82310 0.98119 1.88038 1.77776 1.19498 1.42003 1.21895 0.98343 0.90843 0.87773 0.90029 1.22238 0.99724 1.02843 0.98044 1.20275 0.78075 0.86851 0.85697 1.90672 1.50536 1.79435 1.20737 1.45801 1.62735 1.12821 1.13893 1.21154 0.99195 0.80907 0.95369 1.19615 0.88377 0.97656 0.96045 1.20175 1.24043 1.09126 0.99583 0.90369 1.24959 0.94365 0.97477 0.95418 1.69878 1.27685 1.28245 1.27298 0.86867 0.76893 0.81513 0.84153 1.20409 1.21985 1.18048 1.22841 0.99247 0.98658 1.00783 1.22954 1.07121 0.93679 0.99311 0.92954 0.91553 0.92991 0.90237 0.92566 0.92086 0.92557 0.93268 0.93430 0.90277 0.91741 0.91041 0.76053 0.91821 0.93645 0.92442 0.90923 0.89388 0.89133 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.09 37.16 0.34 -1.09 16 2 C -0.10 -0.95 3.16 -90.62 -0.29 -1.23 16 3 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 4 C 0.06 0.69 5.13 37.16 0.19 0.88 16 5 O -0.36 -5.34 9.06 -55.06 -0.50 -5.84 16 6 C 0.07 1.04 3.13 -27.88 -0.09 0.96 16 7 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 8 C -0.17 -2.17 9.50 37.16 0.35 -1.82 16 9 C 0.51 9.46 7.16 -10.99 -0.08 9.39 16 10 O -0.54 -12.25 16.52 -14.27 -0.24 -12.48 16 11 N -0.70 -13.06 5.42 -60.29 -0.33 -13.39 16 12 C 0.16 3.32 5.14 -4.04 -0.02 3.30 16 13 C -0.02 -0.34 0.85 -155.66 -0.13 -0.47 16 14 C -0.49 -12.70 9.13 -34.44 -0.31 -13.02 16 15 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 17 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 18 Si 0.88 21.33 24.87 -169.99 -4.23 17.10 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.01 5.73 56.52 0.32 -5.69 16 22 C -0.18 -3.36 9.96 -26.70 -0.27 -3.63 16 23 C -0.19 -3.93 7.58 -26.70 -0.20 -4.13 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.79 7.82 -51.93 -0.41 0.38 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.47 7.98 -51.93 -0.41 0.06 16 32 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.08 1.00 7.77 -51.93 -0.40 0.60 16 34 H 0.06 0.66 7.98 -51.93 -0.41 0.24 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 6.87 7.96 -40.82 -0.32 6.54 16 37 H 0.06 1.50 6.68 -51.93 -0.35 1.15 16 38 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.09 1.93 7.24 -51.93 -0.38 1.55 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -31.19 349.45 -7.31 -38.49 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.79 Total: 5.71 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.26 Total: -9.47 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.45 Total: -38.76 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.73 Total: -18.32 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.23 Total: 17.10 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.19 -7.31 -38.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578839977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.902 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds