Wall clock time and date at job start Mon Mar 30 2020 00:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46864 * 2 1 4 4 C 1.53007 * 109.47296 * 119.99756 * 2 1 3 5 5 O 1.42896 * 109.46759 * 64.99907 * 4 2 1 6 6 C 1.42901 * 113.99679 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.47336 * 330.00303 * 6 5 4 8 8 C 1.53001 * 109.47139 * 90.00343 * 6 5 4 9 9 C 1.50699 * 109.47212 * 210.00201 * 6 5 4 10 10 O 1.21285 * 119.99790 * 353.48999 * 9 6 5 11 11 N 1.34778 * 120.00395 * 173.48924 * 9 6 5 12 12 C 1.46499 * 120.00109 * 184.99470 * 11 9 6 13 13 C 1.53005 * 109.46831 * 175.32271 * 12 11 9 14 14 C 1.50706 * 115.54803 * 64.06019 * 13 12 11 15 15 H 1.07998 * 120.00036 * 267.03446 * 14 13 12 16 16 C 1.37872 * 119.99988 * 87.03481 * 14 13 12 17 17 N 1.31512 * 120.00194 * 178.91344 * 16 14 13 18 18 Si 1.86805 * 120.00123 * 358.91075 * 16 14 13 19 19 H 1.48493 * 109.47138 * 91.49975 * 18 16 14 20 20 H 1.48506 * 109.46780 * 211.49793 * 18 16 14 21 21 H 1.48492 * 109.47008 * 331.49524 * 18 16 14 22 22 C 1.52992 * 117.50171 * 278.38913 * 13 12 11 23 23 C 1.52995 * 117.49793 * 209.72533 * 13 12 11 24 24 H 1.08997 * 109.46592 * 60.00584 * 1 2 3 25 25 H 1.09003 * 109.46777 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47208 * 299.99690 * 1 2 3 27 27 H 1.08994 * 109.47597 * 239.99982 * 2 1 3 28 28 H 1.09007 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47291 * 299.99883 * 3 2 1 30 30 H 1.09004 * 109.47317 * 60.00076 * 3 2 1 31 31 H 1.09005 * 109.46476 * 305.00674 * 4 2 1 32 32 H 1.08994 * 109.46943 * 185.00716 * 4 2 1 33 33 H 1.08996 * 109.47259 * 175.31510 * 8 6 5 34 34 H 1.09001 * 109.47013 * 295.31582 * 8 6 5 35 35 H 1.09001 * 109.47066 * 55.31958 * 8 6 5 36 36 H 0.97000 * 119.99931 * 4.99654 * 11 9 6 37 37 H 1.08994 * 109.47163 * 295.32366 * 12 11 9 38 38 H 1.09000 * 109.46816 * 55.32592 * 12 11 9 39 39 H 0.96999 * 120.00536 * 180.02562 * 17 16 14 40 40 H 1.09004 * 117.49668 * 359.97438 * 22 13 12 41 41 H 1.08997 * 117.50012 * 145.02510 * 22 13 12 42 42 H 1.08996 * 117.50024 * 214.98368 * 23 13 12 43 43 H 1.09001 * 117.50043 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.6620 -2.0981 1.1921 6 6 2.0914 -2.8659 2.3181 7 1 3.0165 -2.4459 2.7129 8 6 1.0118 -2.8299 3.4017 9 6 2.3286 -4.2920 1.8927 10 8 2.0362 -4.6466 0.7703 11 7 2.8658 -5.1734 2.7594 12 6 3.1977 -6.5291 2.3141 13 6 3.8947 -7.2823 3.4491 14 6 3.0593 -7.5195 4.6808 15 1 3.0929 -6.8162 5.4997 16 6 2.2523 -8.6343 4.7622 17 7 1.5396 -8.8525 5.8458 18 14 2.1709 -9.8349 3.3334 19 1 3.1864 -10.9014 3.5246 20 1 0.8179 -10.4443 3.2754 21 1 2.4436 -9.1134 2.0645 22 6 5.3912 -7.0337 3.6475 23 6 4.9066 -8.3628 3.0629 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 1.3018 -3.4820 4.2254 34 1 0.8990 -1.8096 3.7683 35 1 0.0654 -3.1723 2.9831 36 1 3.0325 -4.9102 3.6780 37 1 2.2839 -7.0544 2.0368 38 1 3.8622 -6.4757 1.4517 39 1 0.9721 -9.6370 5.9032 40 1 5.8794 -6.3339 2.9692 41 1 5.7717 -7.0422 4.6689 42 1 4.9685 -9.2451 3.6999 43 1 5.0756 -8.5375 2.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578839977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:05 Heat of formation + Delta-G solvation = -97.311502 kcal Electronic energy + Delta-G solvation = -21067.301840 eV Core-core repulsion = 17919.066939 eV Total energy + Delta-G solvation = -3148.234902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01118 -39.28039 -38.51212 -36.04139 -35.10543 -34.22067 -32.23200 -28.50231 -27.99774 -27.28869 -27.04351 -24.60841 -23.33324 -21.44200 -21.21510 -20.82022 -18.69565 -18.16193 -17.79418 -16.96972 -16.89816 -16.27364 -16.06748 -15.75892 -15.19880 -14.96977 -14.79181 -14.62798 -14.17977 -13.99136 -13.74879 -13.53559 -13.29300 -13.14844 -13.09468 -12.91357 -12.67189 -12.40532 -12.19151 -11.98473 -11.96863 -11.77786 -11.58901 -11.48196 -11.00779 -10.96095 -10.69476 -10.54327 -10.27133 -9.91762 -8.30406 -6.36384 1.32553 1.39552 1.49077 1.61363 1.93613 2.35909 2.90613 3.05584 3.26157 3.74195 3.91053 3.95658 4.01532 4.02107 4.11186 4.24244 4.36501 4.41854 4.47703 4.51105 4.63586 4.69692 4.72998 4.79390 4.83636 4.85695 4.87124 5.01695 5.06502 5.09365 5.18999 5.24859 5.28562 5.41151 5.45115 5.48276 5.54094 5.69754 6.17122 6.28352 6.67558 6.74157 7.28495 7.34817 8.83867 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029971 B = 0.003978 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.002851 B = 7037.455252 C = 7245.745732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.139 4.139 4 C 0.056 3.944 5 O -0.384 6.384 6 C 0.080 3.920 7 H 0.116 0.884 8 C -0.165 4.165 9 C 0.502 3.498 10 O -0.584 6.584 11 N -0.697 5.697 12 C 0.165 3.835 13 C -0.039 4.039 14 C -0.478 4.478 15 H 0.051 0.949 16 C 0.029 3.971 17 N -0.942 5.942 18 Si 0.925 3.075 19 H -0.267 1.267 20 H -0.303 1.303 21 H -0.244 1.244 22 C -0.149 4.149 23 C -0.194 4.194 24 H 0.062 0.938 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.413 0.587 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.264 0.736 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 18.368 -7.267 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.196 4.196 4 C -0.020 4.020 5 O -0.303 6.303 6 C 0.019 3.981 7 H 0.134 0.866 8 C -0.223 4.223 9 C 0.289 3.711 10 O -0.464 6.464 11 N -0.348 5.348 12 C 0.040 3.960 13 C -0.040 4.040 14 C -0.515 4.515 15 H 0.069 0.931 16 C -0.169 4.169 17 N -0.581 5.581 18 Si 0.751 3.249 19 H -0.192 1.192 20 H -0.231 1.231 21 H -0.168 1.168 22 C -0.186 4.186 23 C -0.232 4.232 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.249 0.751 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.284 17.926 -8.134 19.957 hybrid contribution -0.343 -1.096 0.282 1.183 sum 2.942 16.830 -7.852 18.803 Atomic orbital electron populations 1.21763 0.94749 1.01203 1.02271 1.21129 0.96744 0.96754 0.96973 1.21743 1.01396 0.93432 1.03035 1.22946 0.99290 0.80449 0.99342 1.88022 1.78272 1.21531 1.42491 1.21887 1.00354 0.88018 0.87846 0.86599 1.22217 0.98117 1.04734 0.97252 1.21145 0.76588 0.88564 0.84820 1.90644 1.52400 1.80595 1.22767 1.45767 1.62561 1.12079 1.14399 1.20897 0.97877 0.81775 0.95418 1.19437 0.89548 1.00111 0.94929 1.20361 1.23429 1.07595 1.00145 0.93108 1.25648 0.94591 0.99450 0.97227 1.69997 1.29515 1.29226 1.29399 0.86105 0.76513 0.80062 0.82240 1.19184 1.23084 1.16757 1.22878 0.96231 0.98000 1.01487 1.23022 1.05998 0.93628 1.00576 0.91908 0.94323 0.91814 0.92054 0.91945 0.91371 0.91446 0.91333 0.92201 0.90403 0.88554 0.93055 0.75069 0.94891 0.92549 0.92676 0.87940 0.89315 0.90258 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.09 71.98 0.65 -2.01 16 2 C -0.10 -1.78 3.16 -10.79 -0.03 -1.82 16 3 C -0.14 -1.70 9.19 71.98 0.66 -1.04 16 4 C 0.06 1.10 5.13 71.98 0.37 1.46 16 5 O -0.38 -11.11 9.06 -130.02 -1.18 -12.29 16 6 C 0.08 2.15 3.13 29.85 0.09 2.24 16 7 H 0.12 2.31 7.79 -2.39 -0.02 2.29 16 8 C -0.17 -3.93 9.50 71.98 0.68 -3.25 16 9 C 0.50 18.42 7.16 87.66 0.63 19.04 16 10 O -0.58 -26.83 16.52 15.91 0.26 -26.57 16 11 N -0.70 -25.27 5.42 -463.06 -2.51 -27.77 16 12 C 0.16 6.79 5.14 86.38 0.44 7.23 16 13 C -0.04 -1.64 0.85 -52.93 -0.04 -1.69 16 14 C -0.48 -24.73 9.13 25.60 0.23 -24.50 16 15 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 16 C 0.03 1.62 5.47 84.65 0.46 2.08 16 17 N -0.94 -56.49 13.96 21.45 0.30 -56.19 16 18 Si 0.92 44.07 24.87 68.60 1.71 45.77 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 21 H -0.24 -11.05 5.73 99.48 0.57 -10.48 16 22 C -0.15 -5.16 9.96 30.62 0.30 -4.85 16 23 C -0.19 -7.41 7.58 30.62 0.23 -7.17 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.04 0.92 7.82 -2.39 -0.02 0.91 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.07 1.08 7.98 -2.38 -0.02 1.06 16 32 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 33 H 0.08 1.86 7.77 -2.39 -0.02 1.84 16 34 H 0.10 1.67 7.98 -2.39 -0.02 1.65 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.41 13.51 7.96 -92.71 -0.74 12.77 16 37 H 0.03 1.55 6.68 -2.39 -0.02 1.54 16 38 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 39 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.08 3.21 7.24 -2.39 -0.02 3.19 16 43 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -69.04 349.45 3.36 -65.68 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.09 Total: 25.63 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 4.69 Total: -14.26 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -2.21 Total: -83.96 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.92 Total: -38.86 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.71 Total: 45.77 kcal Total: -69.04 3.36 -65.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578839977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.636 kcal (2) G-P(sol) polarization free energy of solvation -69.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds