Wall clock time and date at job start Mon Mar 30 2020 01:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.52998 * 109.47337 * 89.99861 * 3 2 1 5 5 H 1.08992 * 110.45869 * 52.39228 * 4 3 2 6 6 C 1.54512 * 110.51066 * 174.99920 * 4 3 2 7 7 C 1.54489 * 104.06142 * 118.64368 * 6 4 3 8 8 O 1.44423 * 104.80014 * 23.97936 * 7 6 4 9 9 C 1.44425 * 105.27631 * 319.48500 * 8 7 6 10 10 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 11 11 O 1.21283 * 120.00062 * 180.02562 * 10 2 1 12 12 C 1.50700 * 120.00216 * 0.02562 * 10 2 1 13 13 C 1.52999 * 109.47172 * 179.97438 * 12 10 2 14 14 C 1.53001 * 109.46762 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47003 * 179.97438 * 14 13 12 16 16 C 1.50692 * 109.47222 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00266 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99997 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99804 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00020 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47419 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47224 * 120.00273 * 20 18 16 23 23 H 1.48502 * 109.47326 * 240.00216 * 20 18 16 24 24 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 25 25 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 27 27 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 28 28 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 29 29 H 1.09000 * 110.51254 * 237.28260 * 6 4 3 30 30 H 1.08993 * 110.51353 * 0.02562 * 6 4 3 31 31 H 1.09004 * 110.37160 * 142.80822 * 7 6 4 32 32 H 1.09001 * 110.37046 * 265.03179 * 7 6 4 33 33 H 1.08998 * 110.37168 * 281.68417 * 9 8 7 34 34 H 1.08999 * 110.37099 * 159.34976 * 9 8 7 35 35 H 1.09000 * 109.47357 * 300.00116 * 12 10 2 36 36 H 1.08998 * 109.46869 * 60.00030 * 12 10 2 37 37 H 1.09000 * 109.47535 * 299.99991 * 13 12 10 38 38 H 1.08998 * 109.47172 * 60.00248 * 13 12 10 39 39 H 1.08995 * 109.47557 * 299.99708 * 14 13 12 40 40 H 1.09007 * 109.47215 * 60.00822 * 14 13 12 41 41 H 1.09000 * 109.46984 * 300.00591 * 15 14 13 42 42 H 1.08999 * 109.46611 * 60.00077 * 15 14 13 43 43 H 0.97001 * 119.99562 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 1 2.9228 0.9072 2.0094 6 6 3.3315 2.9808 1.4723 7 6 2.4393 4.0386 2.1592 8 8 1.4996 3.2741 2.9456 9 6 1.1333 2.1510 2.1148 10 6 2.1389 -1.1671 0.0005 11 8 3.3518 -1.1671 0.0010 12 6 1.3855 -2.4723 0.0005 13 6 2.3798 -3.6352 0.0005 14 6 1.6148 -4.9602 0.0012 15 6 2.6090 -6.1231 0.0005 16 6 1.8556 -7.4282 0.0005 17 1 0.7756 -7.4283 0.0005 18 6 2.5450 -8.6222 -0.0005 19 7 3.8602 -8.6222 -0.0011 20 14 1.6111 -10.2400 -0.0013 21 1 0.1510 -9.9688 -0.0011 22 1 1.9694 -11.0179 -1.2143 23 1 1.9702 -11.0195 1.2106 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 -0.5139 28 1 1.6084 2.0284 -0.5139 29 1 4.2353 2.8063 2.0561 30 1 3.5840 3.2944 0.4594 31 1 3.0397 4.6806 2.8038 32 1 1.9151 4.6354 1.4127 33 1 0.4072 2.4570 1.3617 34 1 0.7303 1.3429 2.7254 35 1 0.7585 -2.5299 0.8903 36 1 0.7592 -2.5302 -0.8897 37 1 3.0065 -3.5775 -0.8894 38 1 3.0064 -3.5774 0.8905 39 1 0.9884 -5.0177 0.8913 40 1 0.9879 -5.0182 -0.8887 41 1 3.2351 -6.0654 -0.8899 42 1 3.2363 -6.0653 0.8901 43 1 4.3452 -9.4622 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588160964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:52 Heat of formation + Delta-G solvation = -129.990833 kcal Electronic energy + Delta-G solvation = -20453.412736 eV Core-core repulsion = 17303.760752 eV Total energy + Delta-G solvation = -3149.651984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.26115 -40.10828 -36.97016 -36.51276 -34.67480 -33.71621 -31.54754 -30.28655 -28.32084 -27.73623 -26.01122 -24.08965 -23.51759 -21.81907 -21.46837 -20.04751 -18.44040 -17.86421 -17.74295 -17.23867 -16.83837 -16.51930 -16.32662 -16.20956 -15.63353 -14.94714 -14.55960 -14.47662 -14.10526 -13.78564 -13.62593 -13.56856 -13.43583 -13.26512 -12.96025 -12.85433 -12.67080 -12.30864 -12.22240 -12.14855 -12.12402 -11.95685 -11.57301 -11.38670 -11.33761 -11.13000 -10.78574 -10.69376 -10.56222 -9.67743 -8.19175 -6.31360 1.40337 1.41375 1.54870 1.62213 2.02141 2.41752 3.02232 3.13659 3.57679 3.61726 3.76275 3.89975 4.02615 4.11636 4.14915 4.23577 4.32030 4.35045 4.55091 4.60502 4.64519 4.71824 4.76064 4.76456 4.81887 4.83639 4.86314 4.92601 5.01276 5.05751 5.12511 5.18379 5.32443 5.36672 5.55853 5.59225 5.77481 5.82856 5.87672 6.24880 6.34698 6.87444 7.18749 7.38390 8.93433 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043379 B = 0.002677 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.317524 B =10455.689431 C =10607.558624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.616 5.616 3 C 0.125 3.875 4 C -0.137 4.137 5 H 0.053 0.947 6 C -0.147 4.147 7 C 0.043 3.957 8 O -0.404 6.404 9 C 0.054 3.946 10 C 0.507 3.493 11 O -0.588 6.588 12 C -0.127 4.127 13 C -0.096 4.096 14 C -0.094 4.094 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.067 0.933 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.256 1.256 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.061 0.939 40 H 0.062 0.938 41 H -0.016 1.016 42 H -0.017 1.017 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 27.130 0.434 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.349 5.349 3 C 0.002 3.998 4 C -0.157 4.157 5 H 0.072 0.928 6 C -0.186 4.186 7 C -0.033 4.033 8 O -0.324 6.324 9 C -0.022 4.022 10 C 0.297 3.703 11 O -0.468 6.468 12 C -0.166 4.166 13 C -0.134 4.134 14 C -0.132 4.132 15 C -0.019 4.019 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.580 5.580 20 Si 0.794 3.206 21 H -0.180 1.180 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.130 0.870 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.814 27.092 0.640 28.822 hybrid contribution 0.585 -1.232 -0.067 1.366 sum -9.229 25.859 0.573 27.463 Atomic orbital electron populations 1.22234 0.76794 1.05048 1.03742 1.48011 1.08616 1.05129 1.73112 1.21572 0.97971 0.85155 0.95102 1.22879 0.97147 0.98259 0.97381 0.92792 1.22947 0.98784 0.93884 1.02935 1.23588 0.90414 0.94028 0.95305 1.89110 1.63177 1.39065 1.41012 1.23632 0.95604 0.88704 0.94302 1.21246 0.87622 0.86803 0.74664 1.90685 1.16461 1.88124 1.51515 1.21700 0.98913 0.89664 1.06328 1.21251 0.97516 0.93812 1.00834 1.21440 0.97780 0.92642 1.01331 1.19065 0.94708 0.93884 0.94254 1.21781 0.93763 0.92164 1.50057 0.91504 1.26113 0.95790 1.03811 0.94809 1.70144 1.08111 1.27697 1.52003 0.85319 0.79217 0.78341 0.77676 1.18005 1.20461 1.20495 0.90643 0.89609 0.88972 0.91608 0.87017 0.91333 0.88470 0.88360 0.90168 0.89676 0.89579 0.86557 0.86454 0.93973 0.94156 0.92075 0.91977 0.99751 0.99827 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 10.00 127.77 1.28 1.87 16 2 N -0.62 -11.22 2.82 -846.75 -2.39 -13.61 16 3 C 0.12 2.02 4.63 86.38 0.40 2.42 16 4 C -0.14 -2.34 3.35 -9.78 -0.03 -2.37 16 5 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 6 C -0.15 -2.04 6.74 31.61 0.21 -1.82 16 7 C 0.04 0.54 7.63 72.49 0.55 1.09 16 8 O -0.40 -7.58 11.65 -148.98 -1.74 -9.31 16 9 C 0.05 0.79 6.08 72.48 0.44 1.23 16 10 C 0.51 13.91 7.67 87.66 0.67 14.59 16 11 O -0.59 -22.18 15.56 -3.04 -0.05 -22.23 16 12 C -0.13 -3.18 4.25 29.85 0.13 -3.05 16 13 C -0.10 -3.53 4.50 30.59 0.14 -3.40 16 14 C -0.09 -3.89 5.15 30.60 0.16 -3.73 16 15 C 0.02 1.00 4.97 29.85 0.15 1.15 16 16 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 17 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 18 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 19 N -0.94 -59.57 13.29 21.45 0.28 -59.29 16 20 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.09 0.72 6.44 -2.38 -0.02 0.70 16 26 H 0.09 0.49 5.87 -2.39 -0.01 0.48 16 27 H 0.07 1.39 7.42 -2.39 -0.02 1.38 16 28 H 0.11 1.03 7.89 -2.39 -0.02 1.01 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.00 7.73 -2.39 -0.02 0.98 16 31 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.80 6.48 -2.39 -0.02 0.78 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.12 2.33 7.40 -2.39 -0.02 2.32 16 36 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 37 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -78.71 344.74 3.89 -74.82 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 0.96 Total: 5.90 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 4.79 Total: -23.32 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -2.10 Total: -72.90 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.78 Total: -31.54 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -78.71 3.89 -74.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.173 kcal (2) G-P(sol) polarization free energy of solvation -78.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds