Wall clock time and date at job start Mon Mar 30 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99990 * 2 1 4 4 C 1.53000 * 109.46739 * 263.66217 * 3 2 1 5 5 H 1.09005 * 110.43701 * 303.50857 * 4 3 2 6 6 C 1.54818 * 110.48920 * 180.82297 * 4 3 2 7 7 C 1.54992 * 102.09346 * 220.44126 * 6 4 3 8 8 O 1.44388 * 103.48965 * 37.02314 * 7 6 4 9 9 C 1.43750 * 106.97259 * 319.93864 * 8 7 6 10 10 C 1.34773 * 120.00081 * 179.97438 * 2 1 3 11 11 O 1.21284 * 120.00179 * 184.85430 * 10 2 1 12 12 C 1.50700 * 119.99990 * 4.85651 * 10 2 1 13 13 C 1.52997 * 109.47301 * 179.97438 * 12 10 2 14 14 C 1.52998 * 109.47424 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47424 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47301 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00047 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99957 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47411 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47180 * 120.00372 * 20 18 16 23 23 H 1.48503 * 109.46962 * 239.99971 * 20 18 16 24 24 H 1.08997 * 109.47216 * 266.71584 * 1 2 3 25 25 H 1.09001 * 109.47112 * 146.71344 * 1 2 3 26 26 H 1.09007 * 109.46830 * 26.71597 * 1 2 3 27 27 H 1.09003 * 109.47489 * 23.65815 * 3 2 1 28 28 H 1.08994 * 109.47484 * 143.66342 * 3 2 1 29 29 H 1.09002 * 110.90454 * 338.64293 * 6 4 3 30 30 H 1.09003 * 110.90731 * 102.24085 * 6 4 3 31 31 H 1.09001 * 110.62040 * 278.52148 * 7 6 4 32 32 H 1.09000 * 110.75350 * 155.58306 * 7 6 4 33 33 H 1.09005 * 109.87368 * 267.08995 * 9 8 7 34 34 H 1.09000 * 110.00080 * 146.01190 * 9 8 7 35 35 H 1.09007 * 109.46694 * 299.99788 * 12 10 2 36 36 H 1.08994 * 109.47130 * 59.99747 * 12 10 2 37 37 H 1.09000 * 109.46924 * 300.00220 * 13 12 10 38 38 H 1.09006 * 109.47289 * 59.99423 * 13 12 10 39 39 H 1.08998 * 109.46932 * 300.00087 * 14 13 12 40 40 H 1.09001 * 109.46700 * 59.99552 * 14 13 12 41 41 H 1.09007 * 109.47129 * 299.99827 * 15 14 13 42 42 H 1.08999 * 109.46920 * 59.99672 * 15 14 13 43 43 H 0.97009 * 119.99831 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5904 1.6307 -1.4337 5 1 3.1733 0.8267 -1.8832 6 6 3.3849 2.9593 -1.4589 7 6 2.8066 3.6596 -2.7148 8 8 1.4082 3.3014 -2.6864 9 6 1.3359 1.9248 -2.2789 10 6 2.1389 -1.1672 0.0005 11 8 3.3485 -1.1690 0.0894 12 6 1.3895 -2.4700 -0.1094 13 6 2.3829 -3.6334 -0.0858 14 6 1.6220 -4.9561 -0.1968 15 6 2.6154 -6.1194 -0.1739 16 6 1.8660 -7.4223 -0.2838 17 1 0.7888 -7.4207 -0.3617 18 6 2.5555 -8.6163 -0.2849 19 7 3.8672 -8.6181 -0.1905 20 14 1.6265 -10.2311 -0.4204 21 1 0.1697 -9.9579 -0.5131 22 1 2.0726 -10.9584 -1.6358 23 1 1.8985 -11.0610 0.7807 24 1 -0.3633 -0.0589 1.0259 25 1 -0.3633 -0.8591 -0.5640 26 1 -0.3633 0.9180 -0.4620 27 1 1.5640 2.0541 0.4124 28 1 3.0961 1.1696 0.6089 29 1 3.1895 3.5463 -0.5615 30 1 4.4524 2.7720 -1.5748 31 1 3.2819 3.2798 -3.6192 32 1 2.9273 4.7406 -2.6442 33 1 1.3205 1.2787 -3.1567 34 1 0.4393 1.7594 -1.6814 35 1 0.6994 -2.5639 0.7292 36 1 0.8298 -2.4894 -1.0445 37 1 3.0727 -3.5391 -0.9245 38 1 2.9430 -3.6141 0.8491 39 1 0.9325 -5.0500 0.6421 40 1 1.0616 -4.9755 -1.1315 41 1 3.3046 -6.0253 -1.0132 42 1 3.1761 -6.1000 0.7606 43 1 4.3523 -9.4582 -0.1908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:54 Heat of formation + Delta-G solvation = -105.942424 kcal Electronic energy + Delta-G solvation = -20502.889927 eV Core-core repulsion = 17354.280760 eV Total energy + Delta-G solvation = -3148.609166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40748 -39.26102 -35.96017 -34.89230 -33.12120 -32.48541 -30.17245 -29.37937 -27.63956 -26.29676 -24.80430 -23.04109 -22.09689 -20.92157 -19.99020 -18.99380 -17.16849 -16.72432 -16.61574 -16.16010 -15.97190 -15.72832 -15.23331 -14.44416 -14.40868 -13.83962 -13.55972 -13.23528 -13.13913 -12.90524 -12.53638 -12.41774 -12.23905 -11.93720 -11.68076 -11.62005 -11.56076 -11.25820 -10.99159 -10.97093 -10.53099 -10.47766 -10.39807 -10.00672 -9.77486 -9.60687 -9.21434 -8.96456 -8.82812 -8.30398 -5.94960 -3.97350 2.66476 2.84312 3.33317 3.40497 3.44442 3.60770 4.21266 4.34431 4.45549 4.49512 4.65109 4.73950 4.88296 4.90527 5.00533 5.11160 5.26822 5.30135 5.33445 5.35735 5.40473 5.41271 5.45554 5.51455 5.56959 5.65953 5.79136 5.87131 6.14292 6.26203 6.34150 6.53252 6.55978 6.84562 7.01730 7.19081 7.26050 7.74946 7.90718 8.06609 8.18978 8.48517 9.10638 9.66330 11.16438 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039642 B = 0.002733 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.152020 B =10242.728016 C =10363.365331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.627 5.627 3 C 0.126 3.874 4 C -0.140 4.140 5 H 0.089 0.911 6 C -0.147 4.147 7 C 0.046 3.954 8 O -0.381 6.381 9 C 0.049 3.951 10 C 0.513 3.487 11 O -0.532 6.532 12 C -0.138 4.138 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 25.393 -1.738 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.362 5.362 3 C 0.003 3.997 4 C -0.160 4.160 5 H 0.108 0.892 6 C -0.186 4.186 7 C -0.030 4.030 8 O -0.300 6.300 9 C -0.028 4.028 10 C 0.303 3.697 11 O -0.408 6.408 12 C -0.177 4.177 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.761 25.393 -1.726 26.096 hybrid contribution -0.328 -1.102 -0.058 1.151 sum -6.089 24.291 -1.784 25.106 Atomic orbital electron populations 1.21945 0.79483 1.03339 1.02211 1.47991 1.06965 1.05977 1.75275 1.21418 0.97790 0.85082 0.95375 1.22991 0.96889 0.98697 0.97404 0.89211 1.23132 1.00693 0.95480 0.99249 1.23555 0.81914 1.00443 0.97131 1.88863 1.24638 1.27054 1.89437 1.23364 0.98495 0.83186 0.97743 1.21137 0.88178 0.85435 0.74992 1.90697 1.14426 1.87291 1.48338 1.21829 1.00143 0.92068 1.03701 1.21462 0.97052 0.92774 1.02877 1.21643 0.99079 0.94018 0.99995 1.19101 0.94074 0.91297 0.97298 1.21322 0.93308 0.91294 1.49824 0.92707 1.25047 0.94843 0.99242 0.95491 1.69987 1.06237 1.26383 1.50880 0.86558 0.80057 0.83908 0.77592 1.19777 1.21051 1.21055 0.92321 0.90467 0.90909 0.90257 0.89724 0.90204 0.89815 0.92151 0.88917 0.92422 0.89537 0.89201 0.89161 0.91877 0.91840 0.93487 0.93514 0.96608 0.96599 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 9.76 59.85 0.58 1.08 16 2 N -0.63 -6.41 2.74 -181.57 -0.50 -6.91 16 3 C 0.13 1.16 4.63 -4.04 -0.02 1.14 16 4 C -0.14 -1.26 3.26 -89.09 -0.29 -1.55 16 5 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 6 C -0.15 -1.08 6.71 -24.72 -0.17 -1.24 16 7 C 0.05 0.35 7.72 38.21 0.29 0.64 16 8 O -0.38 -3.83 11.52 -35.23 -0.41 -4.23 16 9 C 0.05 0.43 7.17 37.73 0.27 0.70 16 10 C 0.51 7.15 7.62 -10.99 -0.08 7.07 16 11 O -0.53 -9.55 15.64 5.55 0.09 -9.46 16 12 C -0.14 -1.84 4.21 -27.88 -0.12 -1.96 16 13 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 14 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 20 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.49 6.57 -51.93 -0.34 0.15 16 26 H 0.07 0.38 5.77 -51.93 -0.30 0.08 16 27 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 28 H 0.08 0.91 7.55 -51.93 -0.39 0.52 16 29 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.67 4.88 -51.93 -0.25 0.41 16 35 H 0.09 1.05 8.05 -51.92 -0.42 0.63 16 36 H 0.09 1.04 7.56 -51.93 -0.39 0.65 16 37 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -34.21 344.25 -7.78 -41.99 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -7.53 Total: -4.66 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.33 Total: -11.96 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.24 Total: -33.81 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.32 Total: -13.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.21 -7.78 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.951 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds